FvH4_5g09700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012434
Physical Location & Seq
Forward (+)
5586565 .. 5587744
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09700.t1

Sequence Viewer

Length: 504 bp
ATGGCCCTGCAACTGCAGGCACCCTCTACCAGAACTCATCTAGCTTCACCATCCCCATTAGCTCCCAAAGGCAATGCCGGTCTACGGCAACCTTCGGATCGTTTTGCTCTAAGATCCTCATTCTTCTCTTCATCAGTTAGCCTATTGCTTCCTCCTAAGCAGCAGAAGCCCCTTGCTAAGGCTGCACCAAAGTTTTCCATGAGAGTTGCCTCCAAGGAAGCTTATATTTGTCGCGATTGCGGGTATATATACAATGAGAGAACTCCTTTTGCAAAGTTACCTGACAATTACTACTGTCCTGTTTGTGGTGCTCCCAAAAGAAGGTTTAGGGTATACCAGCCTCCAGTGACCAAAGACGCCAACAACAAAGATGTTCGAAAGCAACGAAAAGCACAGTTGAAGAGAGACGAAGCGATTGGGAAGGCACTACCTATTGCTATTGCAGTTGGAGTTGTGGCACTAGCTGGATTATACTTCTACCTGAACAACAGCATTCAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

168

Amino Acids

18.44

Weight (kDa)

10.17

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RUBY_RBDX PF21349 75 - 109 8.3e-06 Rubrerythrin, rubredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51010
fragaria_vesca FvH4_5g09700
malus_domestica MD06G1129100.v1.1 MD14G1146000.v1.1
prunus_persica Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1
pyrus_communis pycom14g12100
rosa_chinensis RchiOBHm_Chr7g0188541
rosa_laevigata RLG00000004685
rosa_multiflora Rmu_sc0001576.1_g000010 Rmu_sc0016427.1_g000010
rosa_roxburghii Rroxscaffold_3G00266270
rosa_rugosa Rorug06G0491100
rosa_samantha Rh7AG096000 Rh7BG097800 Rh7CG098800 Rh7DG098000
rosa_wichuraiana Rw7G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 2 cut(s) 82, 333
AccII CGCG 1 cut(s) 234
AciI CCGC 1 cut(s) 240
AclWI GGATC 2 cut(s) 105, 108
AcyI GRCGYC 1 cut(s) 357
AfiI CCNNNNNNNGG 4 cut(s) 84, 178, 305, 321
AgsI TTSAA 1 cut(s) 400
AluBI AGCT 4 cut(s) 44, 62, 221, 464
AluI AGCT 4 cut(s) 44, 62, 221, 464
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 2 cut(s) 105, 108
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 160, 182
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 39
AsuII TTCGAA 1 cut(s) 376
BanI GGYRCC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 169, 172
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 2 cut(s) 41, 461
BfmI CTRYAG 1 cut(s) 14
BisI GCNGC 2 cut(s) 161, 183
BlsI GCNGC 2 cut(s) 162, 184
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 2 cut(s) 156, 177
Bpu14I TTCGAA 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 178, 305, 321
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 4 cut(s) 84, 178, 305, 321
BseMI GCAATG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 169, 172
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 4 cut(s) 84, 178, 305, 321
BsmAI GTCTC 1 cut(s) 399
BsmBI CGTCTC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 97, 113
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 1 cut(s) 240
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 21
BspMAI CTGCAG 1 cut(s) 18
BspPI GGATC 2 cut(s) 105, 108
BspT104I TTCGAA 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 97, 113
BssNAI GTATAC 1 cut(s) 334
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 213
Bst1107I GTATAC 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 296, 396
Bst6I CTCTTC 2 cut(s) 133, 395
BstACI GRCGYC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 3 cut(s) 110, 156, 177
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 2 cut(s) 100, 116
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 2 cut(s) 97, 113
BstMWI GCNNNNNNNGC 2 cut(s) 166, 182
BstSFI CTRYAG 1 cut(s) 14
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 169, 172
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 351
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 365
CviAII CATG 1 cut(s) 199
CviJI RGCY 9 cut(s) 5, 44, 62, 141, 169, 182, 221, 340, 464
CviKI_1 RGCY 9 cut(s) 5, 44, 62, 141, 169, 182, 221, 340, 464
DdeI CTNAG 3 cut(s) 110, 156, 177
DpnI GATC 2 cut(s) 99, 115
DpnII GATC 2 cut(s) 97, 113
Eam1104I CTCTTC 2 cut(s) 133, 395
EarI CTCTTC 2 cut(s) 133, 395
Eco130I CCWWGG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 399
FaeI CATG 1 cut(s) 202
FaiI YATR 7 cut(s) 200, 225, 246, 248, 250, 334, 472
FatI CATG 1 cut(s) 198
FauI CCCGC 1 cut(s) 233
FblI GTMKAC 2 cut(s) 82, 333
Fnu4HI GCNGC 2 cut(s) 161, 183
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 161, 183
FspBI CTAG 2 cut(s) 41, 461
GluI GCNGC 2 cut(s) 161, 183
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 365
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 219
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 2 cut(s) 83, 334
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 83, 334
HpyAV CCTTC 3 cut(s) 102, 315, 415
HpyCH4III ACNGT 2 cut(s) 296, 396
HpyCH4V TGCA 5 cut(s) 10, 16, 185, 272, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 182
HpyF3I CTNAG 3 cut(s) 110, 156, 177
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 97, 113
LmnI GCTCC 2 cut(s) 67, 316
Lsp1109I GCAGC 2 cut(s) 169, 172
MaeI CTAG 2 cut(s) 41, 461
MaeIII GTNAC 2 cut(s) 276, 346
MalI GATC 2 cut(s) 99, 115
MboI GATC 2 cut(s) 97, 113
MboII GAAGA 3 cut(s) 115, 120, 412
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 5 cut(s) 34, 127, 162, 220, 351
MspI CCGG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 492
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 166, 182
NdeII GATC 2 cut(s) 97, 113
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 346
NruI TCGCGA 1 cut(s) 234
NspV TTCGAA 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PctI GAATGC 1 cut(s) 492
PkrI GCNGC 2 cut(s) 162, 184
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 113
RruI TCGCGA 1 cut(s) 234
SatI GCNGC 2 cut(s) 161, 183
Sau3AI GATC 2 cut(s) 97, 113
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 313
SetI ASST 9 cut(s) 46, 64, 94, 223, 283, 326, 433, 466, 483
SfcI CTRYAG 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 376
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 240
SspMI CTAG 2 cut(s) 41, 461
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 296, 396
TaqI TCGA 1 cut(s) 376
TasI AATT 1 cut(s) 286
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 160, 182
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 351
XagI CCTNNNNNAGG 1 cut(s) 176
XmiI GTMKAC 2 cut(s) 82, 333
XspI CTAG 2 cut(s) 41, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.