pycom14g12100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012434
Physical Location & Seq
Reverse (-)
15168108 .. 15168855
748 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g12100.3

Sequence Viewer

Length: 510 bp
ATGGCCCTGCAACTGCAGGCACCCACGACAAGAAACCGCATAGCGCCACCGTCTCCGTTAGCAGCTCCGAAGGGCAATGCCGGCCTCCGACAACCATCCGATAGCTTCGCTCTAAAGTCATCCTTCTTTTCTTCATCACACCACCTCTTATTGCTTTCTCCCAAGCAAAAGCCTCTTGCTTCTTCCTCTGCACCCAAGTTCTCCATGCGCGTCGCCTCCAAAGGAGCCTATATTTGTCGCGATTGCGGGTATATATACAACGACAGAACTCCCTTTGAGAAGTTACCTGACAAGTATTTCTGCCCTGTTTGTGGTGCTCCGAAACGGAGGTTTAGGGTATACCAGCCTCCGGTGACCAAAGACGCCAACAAGAAGGATGTCCGGAAGGAACGAAAAGCGCAGTTGCAGAGAGAAGAAGCAATCGGGAAGGCACTGCCTATTGCTATCGTTGTCGGAGTTGTGGCACTTGTTGGATTATACTTCTACATCAACGCCGGCTTTCAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

170

Amino Acids

18.61

Weight (kDa)

10.09

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51010
fragaria_vesca FvH4_5g09700
malus_domestica MD06G1129100.v1.1 MD14G1146000.v1.1
prunus_persica Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1
pyrus_communis pycom14g12100
rosa_chinensis RchiOBHm_Chr7g0188541
rosa_laevigata RLG00000004685
rosa_multiflora Rmu_sc0001576.1_g000010 Rmu_sc0016427.1_g000010
rosa_roxburghii Rroxscaffold_3G00266270
rosa_rugosa Rorug06G0491100
rosa_samantha Rh7AG096000 Rh7BG097800 Rh7CG098800 Rh7DG098000
rosa_wichuraiana Rw7G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 339
AccII CGCG 2 cut(s) 210, 240
AccIII TCCGGA 1 cut(s) 381
AciI CCGC 2 cut(s) 37, 246
AcyI GRCGYC 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 311, 349
AluBI AGCT 2 cut(s) 65, 105
AluI AGCT 2 cut(s) 65, 105
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 57
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 2 cut(s) 3, 82
ApeKI GCWGC 1 cut(s) 62
AspLEI GCGC 3 cut(s) 46, 210, 400
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 364
BanI GGYRCC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 21, 226
BsaHI GRCGYC 1 cut(s) 363
BsaWI WCCGGW 2 cut(s) 349, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 349
Bse118I RCCGGY 2 cut(s) 80, 494
Bse3DI GCAATG 1 cut(s) 82
BseAI TCCGGA 1 cut(s) 381
BseGI GGATG 3 cut(s) 95, 119, 382
BseLI CCNNNNNNNGG 2 cut(s) 311, 349
BseMI GCAATG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 210, 240
BshFI GGCC 2 cut(s) 5, 84
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 4 cut(s) 81, 350, 382, 495
BslI CCNNNNNNNGG 2 cut(s) 311, 349
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsnI GGCC 2 cut(s) 5, 84
Bsp1286I GDGCHC 1 cut(s) 319
Bsp13I TCCGGA 1 cut(s) 381
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 2 cut(s) 37, 246
BspANI GGCC 2 cut(s) 5, 84
BspEI TCCGGA 1 cut(s) 381
BspFNI CGCG 2 cut(s) 210, 240
BspLI GGNNCC 2 cut(s) 21, 226
BspMAI CTGCAG 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 82
BsrFI RCCGGY 2 cut(s) 80, 494
BssAI RCCGGY 2 cut(s) 80, 494
BssNAI GTATAC 1 cut(s) 340
BssNI GRCGYC 1 cut(s) 363
Bst1107I GTATAC 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 363
BstC8I GCNNGC 3 cut(s) 18, 82, 496
BstEII GGTNACC 1 cut(s) 352
BstF5I GGATG 3 cut(s) 95, 119, 382
BstFNI CGCG 2 cut(s) 210, 240
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 3 cut(s) 46, 210, 400
BstMAI GTCTC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 14
BstUI CGCG 2 cut(s) 210, 240
BstV1I GCAGC 1 cut(s) 74
BstZ17I GTATAC 1 cut(s) 340
BsuRI GGCC 2 cut(s) 5, 84
BtsCI GGATG 3 cut(s) 95, 119, 382
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 431
BtuMI TCGCGA 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 18, 82, 496
CfoI GCGC 3 cut(s) 46, 210, 400
Cfr10I RCCGGY 2 cut(s) 80, 494
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 2 cut(s) 199, 371
CviAII CATG 1 cut(s) 205
CviJI RGCY 8 cut(s) 5, 65, 84, 105, 172, 227, 346, 498
CviKI_1 RGCY 8 cut(s) 5, 65, 84, 105, 172, 227, 346, 498
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 1 cut(s) 208
FaiI YATR 8 cut(s) 41, 206, 231, 252, 254, 256, 340, 478
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 239
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 3 cut(s) 82, 106, 389
Fsp4HI GCNGC 1 cut(s) 63
GlaI GCGC 3 cut(s) 45, 209, 399
GluI GCNGC 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 2 cut(s) 5, 84
HapII CCGG 4 cut(s) 81, 350, 382, 495
HgaI GACGC 2 cut(s) 199, 371
HhaI GCGC 3 cut(s) 46, 210, 400
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 3 cut(s) 44, 208, 398
HinP1I GCGC 3 cut(s) 44, 208, 398
HpaII CCGG 4 cut(s) 81, 350, 382, 495
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 5 cut(s) 69, 89, 100, 321, 455
Hpy188III TCNNGA 3 cut(s) 239, 382, 424
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 5 cut(s) 64, 133, 367, 379, 421
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 10, 16, 191, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 3 cut(s) 44, 208, 398
Kpn2I TCCGGA 1 cut(s) 381
KroI GCCGGC 2 cut(s) 80, 494
KroNI GCCGGC 2 cut(s) 82, 496
LmnI GCTCC 3 cut(s) 70, 224, 322
LpnPI CCDG 9 cut(s) 2, 20, 94, 300, 318, 356, 363, 395, 488
Lsp1109I GCAGC 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 282, 352
MboII GAAGA 3 cut(s) 123, 174, 425
MhlI GDGCHC 1 cut(s) 319
MmeI TCCRAC 3 cut(s) 112, 433, 451
MnlI CCTC 7 cut(s) 95, 155, 183, 196, 226, 321, 357
MroI TCCGGA 1 cut(s) 381
MroNI GCCGGC 2 cut(s) 80, 494
MspI CCGG 4 cut(s) 81, 350, 382, 495
MvnI CGCG 2 cut(s) 210, 240
MwoI GCNNNNNNNGC 1 cut(s) 81
NaeI GCCGGC 2 cut(s) 82, 496
NgoMIV GCCGGC 2 cut(s) 80, 494
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 21, 226
NmuCI GTSAC 1 cut(s) 352
NruI TCGCGA 1 cut(s) 240
PdiI GCCGGC 2 cut(s) 82, 496
PkrI GCNGC 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 21, 226
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 18
RruI TCGCGA 1 cut(s) 240
SatI GCNGC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 319
SetI ASST 5 cut(s) 67, 107, 147, 289, 332
SfcI CTRYAG 1 cut(s) 14
SsiI CCGC 2 cut(s) 37, 246
TaaI ACNGT 1 cut(s) 51
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 2 cut(s) 45, 340
TspRI CASTG 1 cut(s) 438
XmiI GTMKAC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.