Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012434

Physical Location & Seq

Genomic Coordinates Reverse (-)

13093493 .. 13094723

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCCTGCAATTGCAGGCACCCTCAACAAGAAGCCATCTAGCACCGCCATCTCCATTAGCAGCTCCGAAGGGCAATGTCGGCCTACGGCGGCCGTGGGATCGTTTTGCTCTAAAGTCCTCCTTCTTCTCCTCATCACATAGCCTATTGCTGCTTTCTCCTAAGCAACAGCAAAAGTCTCTTGCTTCTTCTGCCGCACCCAAGTTCTCCATGCGTGTTGCCTCCAAGCAAGCCTATATTTGTCGCGATTGCGGGTATATATACAATGACAGAACTCCTTTTGAGAAGTTGCCTGACAAGTATTTCTGCCCTGTCTGTGGTGCTCCCAAACGGAGGTTTAGGGTATACCAGCCTCCGGTGACCAAAGATGCAAACAGCAAAGATGTCCGAAAGCAACGAAAGGCGGAGTTGCAGAGAGAAGAAGCAATTGGGAAGGCACTGCCTATTGCTATTGTAGTGGGAGTTGTGGCACTTGTTGGATTATACTTCTACATTAACATCGGCTTTCAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubredoxin

Protein Analysis

172

Amino Acids

19.03

Weight (kDa)

10.13

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51010
fragaria_vesca	FvH4_5g09700
malus_domestica	MD06G1129100.v1.1 MD14G1146000.v1.1
prunus_persica	Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1
pyrus_communis	pycom14g12100
rosa_chinensis	RchiOBHm_Chr7g0188541
rosa_laevigata	RLG00000004685
rosa_multiflora	Rmu_sc0001576.1_g000010 Rmu_sc0016427.1_g000010
rosa_roxburghii	Rroxscaffold_3G00266270
rosa_rugosa	Rorug06G0491100
rosa_samantha	Rh7AG096000 Rh7BG097800 Rh7CG098800 Rh7DG098000
rosa_wichuraiana	Rw7G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	345
AccII	CGCG	1 cut(s)	246
AciI	CCGC	5 cut(s)	47, 91, 195, 252, 404
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	92
AfiI	CCNNNNNNNGG	3 cut(s)	317, 333, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	3 cut(s)	3, 82, 92
ApeKI	GCWGC	2 cut(s)	62, 151
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	74, 138
BccI	CCATC	2 cut(s)	45, 58
BceAI	ACGGC	2 cut(s)	79, 104
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	41, 514
BisI	GCNGC	4 cut(s)	63, 92, 152, 195
BlsI	GCNGC	4 cut(s)	64, 93, 153, 196
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	21
BmsI	GCATC	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 333, 355
Bse3DI	GCAATG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	3 cut(s)	317, 333, 355
BseMI	GCAATG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	121
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	74, 138
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	5, 84, 94
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	3 cut(s)	317, 333, 355
BsmAI	GTCTC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	5, 84, 94
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	100
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	5 cut(s)	47, 91, 195, 252, 404
BspANI	GGCC	3 cut(s)	5, 84, 94
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	100
BssNAI	GTATAC	1 cut(s)	346
Bst1107I	GTATAC	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	18, 231
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	95
BstEII	GGTNACC	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	100
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 191, 510
BstPI	GGTNACC	1 cut(s)	358
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	74, 138
BstZ17I	GTATAC	1 cut(s)	346
BstZI	CGGCCG	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	5, 84, 94
BtgI	CCRYGG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	437
BtsIMutI	CAGTG	1 cut(s)	437
BtuMI	TCGCGA	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	18, 231
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	92
EagI	CGGCCG	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	419
EclXI	CGGCCG	1 cut(s)	92
Eco52I	CGGCCG	1 cut(s)	92
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
FaeI	CATG	1 cut(s)	214
FaiI	YATR	8 cut(s)	141, 212, 237, 258, 260, 262, 346, 484
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	245
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	63, 92, 152, 195
Fsp4HI	GCNGC	4 cut(s)	63, 92, 152, 195
FspBI	CTAG	2 cut(s)	41, 514
GluI	GCNGC	4 cut(s)	63, 92, 152, 195
HaeIII	GGCC	3 cut(s)	5, 84, 94
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	1 cut(s)	214
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	69, 389
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	64, 133, 427
HpyCH4V	TGCA	4 cut(s)	10, 16, 371, 412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 191, 510
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	70, 328
LpnPI	CCDG	7 cut(s)	2, 20, 306, 324, 362, 369, 494
Lsp1109I	GCAGC	2 cut(s)	74, 138
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	41, 514
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	3 cut(s)	118, 180, 431
MfeI	CAATTG	2 cut(s)	11, 426
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	11, 426
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	6 cut(s)	34, 130, 142, 232, 327, 363
MseI	TTAA	1 cut(s)	495
MspI	CCGG	1 cut(s)	356
MunI	CAATTG	2 cut(s)	11, 426
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	81, 191, 510
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	358
NruI	TCGCGA	1 cut(s)	246
PkrI	GCNGC	4 cut(s)	64, 93, 153, 196
PspEI	GGTNACC	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	4
RruI	TCGCGA	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	4 cut(s)	63, 92, 152, 195
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	2 cut(s)	67, 338
SfaNI	GCATC	1 cut(s)	358
Sse9I	AATT	2 cut(s)	11, 426
SsiI	CCGC	5 cut(s)	47, 91, 195, 252, 404
SspMI	CTAG	2 cut(s)	41, 514
TasI	AATT	2 cut(s)	11, 426
TauI	GCSGC	2 cut(s)	94, 197
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	62, 151
Tsp45I	GTSAC	1 cut(s)	358
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	1 cut(s)	444
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	2 cut(s)	41, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.