Rh7CG098800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012434
Physical Location & Seq
Reverse (-)
7421309 .. 7422896
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG098800.1

Sequence Viewer

Length: 366 bp
ATGGCCCTGCAACTGCAGGCACCCTCTACCAGAACCCATCTAGCATCACCATCCCCATTAGCTCCGAGAGGCAATGCCGGCCTACGGCCACCTTCGGATCGTTTTGCTCTAAGATCCTCATTCTTTTCTTCATCACTTAGCCTATTGCTTCCCCCTAAGCAGCAGAAGCCCCTTGCTAAAGCTGCACCAAAGTTTTCGATGAGAGTTGCCTCCAAGGAAGCCTATATTTGTCGCGATTGCGGGTATATATACAATGAGAGAACTCCTTTTGCAAAGTTACCTGACAATTACTACTGCCCTGGTAATCACTTCTCTTGCATTCTCAAAATGAAATTTACAGCTGTCATCTACATAATGTGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

9.82

Isoelectric Point (pI)

60.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51010
fragaria_vesca FvH4_5g09700
malus_domestica MD06G1129100.v1.1 MD14G1146000.v1.1
prunus_persica Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1
pyrus_communis pycom14g12100
rosa_chinensis RchiOBHm_Chr7g0188541
rosa_laevigata RLG00000004685
rosa_multiflora Rmu_sc0001576.1_g000010 Rmu_sc0016427.1_g000010
rosa_roxburghii Rroxscaffold_3G00266270
rosa_rugosa Rorug06G0491100
rosa_samantha Rh7AG096000 Rh7BG097800 Rh7CG098800 Rh7DG098000
rosa_wichuraiana Rw7G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 1 cut(s) 234
AciI CCGC 1 cut(s) 240
AclWI GGATC 2 cut(s) 105, 108
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 84
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 3 cut(s) 62, 182, 341
AluI AGCT 3 cut(s) 62, 182, 341
AlwI GGATC 2 cut(s) 105, 108
AoxI GGCC 3 cut(s) 3, 79, 86
ApeKI GCWGC 2 cut(s) 160, 182
ApoI RAATTY 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 169, 172
BccI CCATC 2 cut(s) 45, 58
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 300
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 14
BisI GCNGC 2 cut(s) 161, 183
BlsI GCNGC 2 cut(s) 162, 184
Bme1390I CCNGG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 213, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse118I RCCGGY 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 213, 298
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 79
BseXI GCAGC 2 cut(s) 169, 172
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 5, 81, 88
BshNI GGYRCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 84
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 3 cut(s) 5, 81, 88
Bsp143I GATC 2 cut(s) 97, 113
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 1 cut(s) 240
BspANI GGCC 3 cut(s) 5, 81, 88
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 21
BspMAI CTGCAG 1 cut(s) 18
BspPI GGATC 2 cut(s) 105, 108
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 213, 298
BssMI GATC 2 cut(s) 97, 113
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 18, 79
BstDEI CTNAG 3 cut(s) 110, 137, 156
BstF5I GGATG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 2 cut(s) 100, 116
BstMBI GATC 2 cut(s) 97, 113
BstMWI GCNNNNNNNGC 3 cut(s) 78, 166, 182
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 14
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 169, 172
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 3 cut(s) 5, 81, 88
BtsCI GGATG 1 cut(s) 50
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 18, 79
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 9 cut(s) 5, 62, 81, 88, 141, 169, 182, 221, 341
CviKI_1 RGCY 9 cut(s) 5, 62, 81, 88, 141, 169, 182, 221, 341
DdeI CTNAG 3 cut(s) 110, 137, 156
DpnI GATC 2 cut(s) 99, 115
DpnII GATC 2 cut(s) 97, 113
EaeI YGGCCR 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaiI YATR 5 cut(s) 225, 246, 248, 250, 353
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 2 cut(s) 161, 183
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 161, 183
FspBI CTAG 1 cut(s) 41
GluI GCNGC 2 cut(s) 161, 183
HaeIII GGCC 3 cut(s) 5, 81, 88
HapII CCGG 1 cut(s) 78
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 66, 97
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 5 cut(s) 10, 16, 185, 272, 318
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 166, 182
HpyF3I CTNAG 3 cut(s) 110, 137, 156
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 97, 113
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 7 cut(s) 2, 20, 43, 91, 285, 294, 312
Lsp1109I GCAGC 2 cut(s) 169, 172
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 276
MalI GATC 2 cut(s) 99, 115
MboI GATC 2 cut(s) 97, 113
MboII GAAGA 1 cut(s) 120
MflI RGATCY 1 cut(s) 113
MluCI AATT 2 cut(s) 286, 332
MnlI CCTC 4 cut(s) 34, 62, 127, 220
MroNI GCCGGC 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 318
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 78, 166, 182
NaeI GCCGGC 1 cut(s) 79
NdeII GATC 2 cut(s) 97, 113
NgoMIV GCCGGC 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 21
NruI TCGCGA 1 cut(s) 234
PctI GAATGC 1 cut(s) 318
PdiI GCCGGC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 162, 184
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 341
RruI TCGCGA 1 cut(s) 234
SatI GCNGC 2 cut(s) 161, 183
Sau3AI GATC 2 cut(s) 97, 113
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 300
SetI ASST 5 cut(s) 64, 94, 184, 283, 343
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 286, 332
SsiI CCGC 1 cut(s) 240
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 213
TaqI TCGA 1 cut(s) 197
TasI AATT 2 cut(s) 286, 332
TseI GCWGC 2 cut(s) 160, 182
TspDTI ATGAA 2 cut(s) 120, 344
XapI RAATTY 1 cut(s) 332
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.