MD14G1146000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0012434
Physical Location & Seq
Reverse (-)
23887259 .. 23888166
908 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1146000.v1.1.491

Sequence Viewer

Length: 510 bp
ATGGCCCTGCAACTGCAGGCACCCACCACAAGAAACCGCCTAGCGCCACCATCTCCGTTAGCAGCTCCGAAGGGCAATGCCGGCCTCCGACAACCATCCGATAGCTTCGCTCTAAAGTCATCCTTCTTTTCTTCATCACACCACCTCTTATTGCTTTCTCCCAAGCAAAAGCCTCTTGCTTCATCCTCTGCACCCAAGTTCTCCATGCGCGTCGCTTCCAAAGGAGCCTATATTTGTCGCGATTGCGGGTATATATACAACGACAGAACTCCCTTTGAGAAGTTACCTGACAAGTATTTCTGCCCTGTTTGTGGTGCTCCGAAACGGAGGTTTAGGGCATACCAGCCTCCTGTGACCAAAGACGCCAACAAGAAGGATGTCCGGAAGGAACGAAAAGCGCAGTTGCAGAGAGAAGAAGCAATCGGGAAGGCACTGCCTATTACTATCGTTGTCGGAGTTGTGGCACTTGTTGGATTATTCTTCTACATCAACGTCGGCTTTCAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

170

Amino Acids

18.63

Weight (kDa)

10.13

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RUBY_RBDX PF21349 77 - 111 6e-06 Rubrerythrin, rubredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51010
fragaria_vesca FvH4_5g09700
malus_domestica MD06G1129100.v1.1 MD14G1146000.v1.1
prunus_persica Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1
pyrus_communis pycom14g12100
rosa_chinensis RchiOBHm_Chr7g0188541
rosa_laevigata RLG00000004685
rosa_multiflora Rmu_sc0001576.1_g000010 Rmu_sc0016427.1_g000010
rosa_roxburghii Rroxscaffold_3G00266270
rosa_rugosa Rorug06G0491100
rosa_samantha Rh7AG096000 Rh7BG097800 Rh7CG098800 Rh7DG098000
rosa_wichuraiana Rw7G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 2 cut(s) 210, 240
AccIII TCCGGA 1 cut(s) 381
AciI CCGC 2 cut(s) 37, 246
AcyI GRCGYC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 311
AluBI AGCT 2 cut(s) 65, 105
AluI AGCT 2 cut(s) 65, 105
Alw21I GWGCWC 1 cut(s) 319
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 2 cut(s) 3, 82
ApeKI GCWGC 1 cut(s) 62
AspLEI GCGC 3 cut(s) 46, 210, 400
AspS9I GGNCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 74
BccI CCATC 2 cut(s) 58, 103
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 21, 226
BsaHI GRCGYC 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 82
BseAI TCCGGA 1 cut(s) 381
BseGI GGATG 4 cut(s) 95, 119, 182, 382
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 210, 240
BshFI GGCC 2 cut(s) 5, 84
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 2 cut(s) 81, 382
BslI CCNNNNNNNGG 1 cut(s) 311
BsnI GGCC 2 cut(s) 5, 84
Bsp1286I GDGCHC 1 cut(s) 319
Bsp13I TCCGGA 1 cut(s) 381
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 2 cut(s) 37, 246
BspANI GGCC 2 cut(s) 5, 84
BspEI TCCGGA 1 cut(s) 381
BspFNI CGCG 2 cut(s) 210, 240
BspLI GGNNCC 2 cut(s) 21, 226
BspMAI CTGCAG 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 18, 82
BstF5I GGATG 4 cut(s) 95, 119, 182, 382
BstFNI CGCG 2 cut(s) 210, 240
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 3 cut(s) 46, 210, 400
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 14
BstUI CGCG 2 cut(s) 210, 240
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 5, 84
BtsCI GGATG 4 cut(s) 95, 119, 182, 382
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 431
BtuMI TCGCGA 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 18, 82
CfoI GCGC 3 cut(s) 46, 210, 400
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 2 cut(s) 199, 371
CviAII CATG 1 cut(s) 205
CviJI RGCY 8 cut(s) 5, 65, 84, 105, 172, 227, 346, 498
CviKI_1 RGCY 8 cut(s) 5, 65, 84, 105, 172, 227, 346, 498
FaeI CATG 1 cut(s) 208
FaiI YATR 6 cut(s) 206, 231, 252, 254, 256, 340
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 4 cut(s) 82, 106, 169, 389
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 41
GlaI GCGC 3 cut(s) 45, 209, 399
GluI GCNGC 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 2 cut(s) 5, 84
HapII CCGG 2 cut(s) 81, 382
HgaI GACGC 2 cut(s) 199, 371
HhaI GCGC 3 cut(s) 46, 210, 400
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 3 cut(s) 44, 208, 398
HinP1I GCGC 3 cut(s) 44, 208, 398
HpaII CCGG 2 cut(s) 81, 382
Hpy188I TCNGA 5 cut(s) 69, 89, 100, 321, 455
Hpy188III TCNNGA 3 cut(s) 239, 382, 424
Hpy99I CGWCG 2 cut(s) 215, 497
HpyAV CCTTC 5 cut(s) 64, 133, 367, 379, 421
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 4 cut(s) 10, 16, 191, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 3 cut(s) 44, 208, 398
Kpn2I TCCGGA 1 cut(s) 381
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 70, 224, 322
LpnPI CCDG 9 cut(s) 2, 20, 94, 300, 318, 356, 363, 395, 488
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 282, 352
MboII GAAGA 3 cut(s) 123, 425, 472
MhlI GDGCHC 1 cut(s) 319
MmeI TCCRAC 3 cut(s) 112, 433, 451
MnlI CCTC 6 cut(s) 95, 155, 183, 196, 321, 357
MroI TCCGGA 1 cut(s) 381
MroNI GCCGGC 1 cut(s) 80
MspI CCGG 2 cut(s) 81, 382
MvnI CGCG 2 cut(s) 210, 240
MwoI GCNNNNNNNGC 1 cut(s) 81
NaeI GCCGGC 1 cut(s) 82
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 21, 226
NmuCI GTSAC 1 cut(s) 352
NruI TCGCGA 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 21, 226
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 18
RruI TCGCGA 1 cut(s) 240
SatI GCNGC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 319
SetI ASST 6 cut(s) 67, 107, 147, 289, 332, 495
SfcI CTRYAG 1 cut(s) 14
SsiI CCGC 2 cut(s) 37, 246
SspMI CTAG 1 cut(s) 41
TaiI ACGT 1 cut(s) 495
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 123, 171
TspGWI ACGGA 2 cut(s) 45, 340
TspRI CASTG 1 cut(s) 438
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.