Rh7DG098000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012434
Physical Location & Seq
Reverse (-)
8189018 .. 8189933
916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG098000.1

Sequence Viewer

Length: 504 bp
ATGGCCCTGCAACTGCAGGCACCCTCTACCAGAACCCATCTAGCATCACCATCCCCACTAGCTCCGAGAGGCAATGCCGGCCTACGGCCACCTTCGGATCGTTTTGCTCTAAGATCCTCATTCTTTTCTTCATCACTTAGCCTATTGCTTCCCCCTAAGCAGCAGAAGCCCCTTGCTAAAGCTGCACCAAAGTTTTCGATGAGAGTTGCCTCCAAGGAAGCCTATATTTGTCGCGATTGCGGGTATATATACAATGAGAGAACTCCTTTTGCAAAGTTACCTGACAATTACTACTGCCCTGTTTGTGGTGCTCCCAAAAGGAGGTTTAGGGTATACCAGCCTCCTGTGACCAAAGAAGCCAACAACAAAGATGTTCGAAAGGCACGAAAAGCACAGTTGCAGAGAGACGAAGCGATTGGAAAGGCACTACCTATTGCTATTGCGGTTGGAGTTGTGGCACTTGCTGGATTATACTTCTACCTGAACAACAGCATCCAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

167

Amino Acids

18.41

Weight (kDa)

10.18

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RUBY_RBDX PF21349 75 - 109 8.3e-06 Rubrerythrin, rubredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51010
fragaria_vesca FvH4_5g09700
malus_domestica MD06G1129100.v1.1 MD14G1146000.v1.1
prunus_persica Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1 Prupe.5G140400_v2.0.a1
pyrus_communis pycom14g12100
rosa_chinensis RchiOBHm_Chr7g0188541
rosa_laevigata RLG00000004685
rosa_multiflora Rmu_sc0001576.1_g000010 Rmu_sc0016427.1_g000010
rosa_roxburghii Rroxscaffold_3G00266270
rosa_rugosa Rorug06G0491100
rosa_samantha Rh7AG096000 Rh7BG097800 Rh7CG098800 Rh7DG098000
rosa_wichuraiana Rw7G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 333
AccII CGCG 1 cut(s) 234
AciI CCGC 2 cut(s) 240, 443
AclWI GGATC 2 cut(s) 105, 108
AcoI YGGCCR 1 cut(s) 86
AfiI CCNNNNNNNGG 3 cut(s) 84, 305, 321
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 2 cut(s) 62, 182
AluI AGCT 2 cut(s) 62, 182
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 2 cut(s) 105, 108
AoxI GGCC 3 cut(s) 3, 79, 86
ApeKI GCWGC 2 cut(s) 160, 182
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 39
AsuII TTCGAA 1 cut(s) 376
BanI GGYRCC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 169, 172
BccI CCATC 2 cut(s) 45, 58
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 497
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 2 cut(s) 41, 59
BfmI CTRYAG 1 cut(s) 14
BisI GCNGC 2 cut(s) 161, 183
BlsI GCNGC 2 cut(s) 162, 184
Bme1390I CCNGG 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 213, 496
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 305, 321
Bse118I RCCGGY 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 213, 496
BseGI GGATG 2 cut(s) 50, 492
BseLI CCNNNNNNNGG 3 cut(s) 84, 305, 321
BseMI GCAATG 1 cut(s) 79
BseXI GCAGC 2 cut(s) 169, 172
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 5, 81, 88
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 84, 305, 321
BsmAI GTCTC 1 cut(s) 399
BsmBI CGTCTC 1 cut(s) 399
BsnI GGCC 3 cut(s) 5, 81, 88
Bsp119I TTCGAA 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 97, 113
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 2 cut(s) 240, 443
BspANI GGCC 3 cut(s) 5, 81, 88
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 21
BspMAI CTGCAG 1 cut(s) 18
BspPI GGATC 2 cut(s) 105, 108
BspT104I TTCGAA 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 213, 496
BssMI GATC 2 cut(s) 97, 113
BssNAI GTATAC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 213
Bst1107I GTATAC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 396
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 18, 79
BstDEI CTNAG 3 cut(s) 110, 137, 156
BstF5I GGATG 2 cut(s) 50, 492
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 2 cut(s) 100, 116
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 2 cut(s) 97, 113
BstMWI GCNNNNNNNGC 4 cut(s) 78, 166, 182, 389
BstNI CCWGG 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 495
BstSFI CTRYAG 1 cut(s) 14
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 169, 172
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 334
BsuRI GGCC 3 cut(s) 5, 81, 88
BtsCI GGATG 2 cut(s) 50, 492
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 18, 79
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 110, 137, 156
DpnI GATC 2 cut(s) 99, 115
DpnII GATC 2 cut(s) 97, 113
EaeI YGGCCR 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 399
FaiI YATR 6 cut(s) 225, 246, 248, 250, 334, 472
FauI CCCGC 1 cut(s) 233
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 161, 183
FokI GGATG 2 cut(s) 37, 479
Fsp4HI GCNGC 2 cut(s) 161, 183
FspBI CTAG 2 cut(s) 41, 59
GluI GCNGC 2 cut(s) 161, 183
HaeIII GGCC 3 cut(s) 5, 81, 88
HapII CCGG 1 cut(s) 78
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 66, 97
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4V TGCA 5 cut(s) 10, 16, 185, 272, 400
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 166, 182, 389
HpyF3I CTNAG 3 cut(s) 110, 137, 156
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 97, 113
LmnI GCTCC 2 cut(s) 67, 316
Lsp1109I GCAGC 2 cut(s) 169, 172
LweI GCATC 1 cut(s) 53
MaeI CTAG 2 cut(s) 41, 59
MaeIII GTNAC 2 cut(s) 276, 346
MalI GATC 2 cut(s) 99, 115
MboI GATC 2 cut(s) 97, 113
MboII GAAGA 1 cut(s) 120
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 6 cut(s) 34, 62, 127, 220, 315, 351
MroNI GCCGGC 1 cut(s) 77
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 497
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 4 cut(s) 78, 166, 182, 389
NaeI GCCGGC 1 cut(s) 79
NdeII GATC 2 cut(s) 97, 113
NgoMIV GCCGGC 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 346
NruI TCGCGA 1 cut(s) 234
NspV TTCGAA 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PdiI GCCGGC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 162, 184
Psp6I CCWGG 1 cut(s) 495
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 113
RruI TCGCGA 1 cut(s) 234
SatI GCNGC 2 cut(s) 161, 183
Sau3AI GATC 2 cut(s) 97, 113
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 497
SduI GDGCHC 1 cut(s) 313
SetI ASST 7 cut(s) 64, 94, 184, 283, 326, 433, 483
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 376
Sse9I AATT 1 cut(s) 286
SsiI CCGC 2 cut(s) 240, 443
SspMI CTAG 2 cut(s) 41, 59
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 197, 376
TasI AATT 1 cut(s) 286
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 160, 182
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 2 cut(s) 41, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.