FvH4_5g10320

Dolichol-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016586
Physical Location & Seq
Forward (+)
5897456 .. 5899300
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10320.t1

Sequence Viewer

Length: 720 bp
ATGGAGAAGACGAAGAACAAGTACAGTATCATAGTCCCAACCTACAACGAGCGCCTCAACATCGCCCTCCTCGTCTACCTCGTCTTCAAGCATCTCCGGGATGTTGACTTTGAGATAATCATTGTAGACGATGGATCGCCTGACGGGACTCAGCTGGTGGTTCAGCAATTGCAGGACCTCTACGGTCAGGATCGCATCCTGTTGAGAGCTAGACCGAGGAAGCTTGGGTTGGGAACGGCTTACATTCATGGATTGAAGCATGCCTCTGGGGATTTTGTTGTGATAATGGATGCGGATTTGTCGCATCATCCAAAGTATTTGCCAAGCTTCATCAAGAAACAGTTGGAGACTAATGCTAGTATAGTTACTGGAACCCGTTATGTTAAAGGTGGGGGTGTACATGGGTGGAATCTTATGCGCAAACTAACTAGTAGGGGAGCCAATGTACTTGCACAGACGCTTTTATGGCCTGGTGTATCAGACTTGACAGGATCTTTCAGGCTTTATAAAAAATCAGCTCTTGAAGATATCATTAGTTCATGTGTCAGCAAGGGATATGTATTTCAGATGGAAATGATAGTTCGGGCTTCTAGAAAAGGCTACCATATTGAAGAGGTTCCAATCACTTTTGTTGACAGAGTATATGGAATTTCAAAGCTCGGTGGTTCTGAAATTGTTGAATATCTGAAAGGCCTTGCATATCTTCTTGTTACAACATGA

Protein Analysis

240

Amino Acids

26.83

Weight (kDa)

9.33

Isoelectric Point (pI)

24.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 8 - 213 5e-09 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 9 - 177 1e-37 Glycosyl transferase family 2
Glyco_tranf_2_2 PF10111 9 - 112 1.2e-06 Glycosyltransferase like family 2
Glyco_transf_21 PF13506 81 - 177 8.4e-07 Glycosyl transferase family 21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016586)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20575
fragaria_vesca FvH4_5g10320
malus_domestica MD06G1125000.v1.1
prunus_persica Prupe.5G135600_v2.0.a1
pyrus_communis pycom06g11560
rosa_chinensis RchiOBHm_Chr7g0187901
rosa_laevigata RLG00000004749
rosa_multiflora Rmu_sc0022114.1_g000004
rosa_roxburghii Rroxscaffold_3G00266960
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090400 Rh7BG092000 Rh7CG091100
rosa_wichuraiana Rw7G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 507
Acc16I TGCGCA 1 cut(s) 419
AccI GTMKAC 2 cut(s) 75, 126
AciI CCGC 1 cut(s) 293
AclWI GGATC 3 cut(s) 142, 198, 499
AcsI RAATTY 1 cut(s) 648
AfaI GTAC 3 cut(s) 23, 399, 447
AgsI TTSAA 6 cut(s) 88, 256, 524, 611, 654, 680
AhlI ACTAGT 1 cut(s) 428
AjnI CCWGG 1 cut(s) 469
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 6 cut(s) 154, 209, 223, 327, 518, 658
AluI AGCT 6 cut(s) 154, 209, 223, 327, 518, 658
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 3 cut(s) 142, 198, 499
AoxI GGCC 2 cut(s) 467, 691
ApoI RAATTY 1 cut(s) 648
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 2 cut(s) 54, 420
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 175
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbsI GAAGAC 2 cut(s) 14, 76
BccI CCATC 2 cut(s) 125, 562
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 471
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 341
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 4 cut(s) 210, 357, 429, 591
BfoI RGCGCY 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 98, 471
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 3 cut(s) 373, 439, 618
BmrFI CCNGG 2 cut(s) 98, 471
BmsI GCATC 4 cut(s) 100, 204, 280, 313
BpiI GAAGAC 2 cut(s) 14, 76
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bse1I ACTGG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 4 cut(s) 106, 195, 295, 307
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 59
BshFI GGCC 2 cut(s) 469, 693
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 2 cut(s) 20, 160
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 2 cut(s) 20, 160
BsnI GGCC 2 cut(s) 469, 693
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 3 cut(s) 134, 190, 491
BspACI CCGC 1 cut(s) 293
BspANI GGCC 2 cut(s) 469, 693
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 373, 439, 618
BspPI GGATC 3 cut(s) 142, 198, 499
BsrGI TGTACA 1 cut(s) 397
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 3 cut(s) 134, 190, 491
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 26, 185, 342
Bst6I CTCTTC 1 cut(s) 606
BstAUI TGTACA 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 4 cut(s) 106, 195, 295, 307
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 2 cut(s) 54, 420
BstKTI GATC 3 cut(s) 137, 193, 494
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 3 cut(s) 134, 190, 491
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 96, 469
BstV2I GAAGAC 2 cut(s) 14, 76
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BsuRI GGCC 2 cut(s) 469, 693
BtgZI GCGATG 1 cut(s) 46
BtsCI GGATG 4 cut(s) 106, 195, 295, 307
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 2 cut(s) 54, 420
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 466
Csp6I GTAC 3 cut(s) 22, 398, 446
CviAII CATG 5 cut(s) 248, 260, 401, 540, 717
CviQI GTAC 3 cut(s) 22, 398, 446
DdeI CTNAG 1 cut(s) 150
DpnI GATC 3 cut(s) 136, 192, 493
DpnII GATC 3 cut(s) 134, 190, 491
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 693
Eco32I GATATC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 469
EcoRV GATATC 1 cut(s) 529
FaeI CATG 5 cut(s) 251, 263, 404, 543, 720
FaqI GGGAC 2 cut(s) 20, 160
FatI CATG 5 cut(s) 247, 259, 400, 539, 716
FblI GTMKAC 2 cut(s) 75, 126
FokI GGATG 4 cut(s) 113, 182, 294, 302
FspBI CTAG 4 cut(s) 210, 357, 429, 591
FspI TGCGCA 1 cut(s) 419
GlaI GCGC 2 cut(s) 53, 419
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 2 cut(s) 469, 693
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 466
HhaI GCGC 2 cut(s) 54, 420
Hin1II CATG 5 cut(s) 251, 263, 404, 543, 720
Hin6I GCGC 2 cut(s) 52, 418
HinP1I GCGC 2 cut(s) 52, 418
HincII GTYRAC 2 cut(s) 106, 634
HindII GTYRAC 2 cut(s) 106, 634
HindIII AAGCTT 2 cut(s) 221, 325
HinfI GANTC 2 cut(s) 148, 409
HpaII CCGG 1 cut(s) 97
Hpy166II GTNNAC 5 cut(s) 76, 106, 127, 398, 634
Hpy188I TCNGA 4 cut(s) 481, 567, 670, 687
Hpy188III TCNNGA 4 cut(s) 188, 334, 521, 591
Hpy8I GTNNAC 5 cut(s) 76, 106, 127, 398, 634
HpyCH4III ACNGT 3 cut(s) 26, 185, 342
HpyCH4V TGCA 3 cut(s) 172, 452, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 5 cut(s) 251, 263, 404, 543, 720
HspAI GCGC 2 cut(s) 52, 418
Kzo9I GATC 3 cut(s) 134, 190, 491
LmnI GCTCC 1 cut(s) 437
LweI GCATC 4 cut(s) 100, 204, 280, 313
MaeI CTAG 4 cut(s) 210, 357, 429, 591
MaeIII GTNAC 2 cut(s) 364, 709
MalI GATC 3 cut(s) 136, 192, 493
MboI GATC 3 cut(s) 134, 190, 491
MboII GAAGA 6 cut(s) 19, 25, 76, 536, 623, 695
MfeI CAATTG 1 cut(s) 167
MflI RGATCY 1 cut(s) 491
MluCI AATT 3 cut(s) 167, 648, 672
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 8 cut(s) 65, 77, 80, 89, 188, 210, 274, 607
MroXI GAANNNNTTC 1 cut(s) 615
MseI TTAA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 98, 471
MunI CAATTG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 466
NciI CCSGG 1 cut(s) 98
NdeII GATC 3 cut(s) 134, 190, 491
NlaIII CATG 5 cut(s) 251, 263, 404, 543, 720
NlaIV GGNNCC 3 cut(s) 373, 439, 618
NsbI TGCGCA 1 cut(s) 419
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PceI AGGCCT 1 cut(s) 693
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 78
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 1 cut(s) 409
PfoI TCCNGGA 1 cut(s) 96
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 175
PsiI TTATAA 1 cut(s) 507
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 373, 439, 618
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PsuI RGATCY 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 3 cut(s) 23, 399, 447
RsaNI GTAC 3 cut(s) 22, 398, 446
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 3 cut(s) 134, 190, 491
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 98, 471
SfaNI GCATC 4 cut(s) 100, 204, 280, 313
SinI GGWCC 1 cut(s) 175
SpeI ACTAGT 1 cut(s) 428
SphI GCATGC 1 cut(s) 263
Sse9I AATT 3 cut(s) 167, 648, 672
SseBI AGGCCT 1 cut(s) 693
SsiI CCGC 1 cut(s) 293
SspMI CTAG 4 cut(s) 210, 357, 429, 591
StuI AGGCCT 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 96, 469
TaaI ACNGT 3 cut(s) 26, 185, 342
TaqII GACCGA 1 cut(s) 229
TasI AATT 3 cut(s) 167, 648, 672
TatI WGTACW 3 cut(s) 21, 397, 445
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TspDTI ATGAA 3 cut(s) 236, 319, 528
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 648
XbaI TCTAGA 1 cut(s) 590
XceI RCATGY 1 cut(s) 263
XmiI GTMKAC 2 cut(s) 75, 126
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 4 cut(s) 210, 357, 429, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.