Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022114.1

Orthogroup ID

OG0016586

Physical Location & Seq

Genomic Coordinates Reverse (-)

10398 .. 12377

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022114.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggagaagacgaagaacaagtacagtatcatagtcccaacctataacgagcgcctcaacatcgccctcctcgtctacctcgtcttcaagcatctccgggatgttgactttgagatcatcattgttgacgatggatcccctgacggtactcagcaggtggttcagcaattgcaggagctgtacggtcacgatcgcatcctgttgagagctagagctaagaagcttgggttgggaacggcttacattcatggattgaagcatgcatctggcaattttgttgtgataatggatgcagatttgtcacatcatccaaagtatttgccaagcttcatcaagaaacagttggagactgatgctactatagttactggaacccgttatgttaaaggtgggggtgtacatgggtggaatcttatgcgcaaactaacaagtaggggggccaatgtacttgcacagacgcttttatggcctggcgtatcagacttgacaggatctttccggctttatagaaaatcagctcttgaagatatcattagttcctgtgtcagcaagggatatgtatttcagatggaaatgatagttcgggcctctagaaaaggctaccatatcgaagaggttccaatcacttttgttgacagagtatatggaatttcaaagctcggaggttctgaaattgtcgaatatctgaaaggccttgcctatcttcttgttacaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0012505 GO:0031501 GO:0032991 GO:0033185 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0060359 GO:1901698 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glycos_transf_2

Protein Analysis

239

Amino Acids

26.86

Weight (kDa)

9.33

Isoelectric Point (pI)

22.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20575
fragaria_vesca	FvH4_5g10320
malus_domestica	MD06G1125000.v1.1
prunus_persica	Prupe.5G135600_v2.0.a1
pyrus_communis	pycom06g11560
rosa_chinensis	RchiOBHm_Chr7g0187901
rosa_laevigata	RLG00000004749
rosa_multiflora	Rmu_sc0022114.1_g000004
rosa_roxburghii	Rroxscaffold_3G00266960
rosa_rugosa	Rorug06G0485300
rosa_samantha	Rh7AG090400 Rh7BG092000 Rh7CG091100
rosa_wichuraiana	Rw7G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc16I	TGCGCA	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	75
AclWI	GGATC	3 cut(s)	129, 142, 499
AcsI	RAATTY	1 cut(s)	648
AfaI	GTAC	5 cut(s)	23, 148, 182, 399, 447
AgsI	TTSAA	4 cut(s)	88, 256, 524, 654
AjnI	CCWGG	1 cut(s)	469
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	7 cut(s)	178, 209, 215, 223, 327, 518, 658
AluI	AGCT	7 cut(s)	178, 209, 215, 223, 327, 518, 658
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	3 cut(s)	129, 142, 499
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	4 cut(s)	438, 467, 585, 691
ApoI	RAATTY	1 cut(s)	648
Asp700I	GAANNNNTTC	1 cut(s)	615
AspLEI	GCGC	2 cut(s)	54, 420
AspS9I	GGNCC	2 cut(s)	438, 585
AsuC2I	CCSGG	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	14, 76
BccI	CCATC	2 cut(s)	125, 562
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	2 cut(s)	210, 591
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	98, 471
BmgT120I	GGNCC	2 cut(s)	438, 585
BmiI	GGNNCC	4 cut(s)	136, 373, 439, 618
BmrFI	CCNGG	2 cut(s)	98, 471
BmsI	GCATC	5 cut(s)	100, 204, 272, 280, 343
BpiI	GAAGAC	2 cut(s)	14, 76
BpuMI	CCSGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	471
BseGI	GGATG	4 cut(s)	106, 195, 295, 307
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	4 cut(s)	440, 469, 587, 693
BsiEI	CGRYCG	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	97, 499
BslFI	GGGAC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	440, 469, 587, 693
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	114, 134, 190, 491
BspANI	GGCC	4 cut(s)	440, 469, 587, 693
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	136, 373, 439, 618
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	3 cut(s)	129, 142, 499
BsrGI	TGTACA	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	373
BssMI	GATC	4 cut(s)	114, 134, 190, 491
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	4 cut(s)	26, 146, 185, 342
Bst6I	CTCTTC	1 cut(s)	606
BstAUI	TGTACA	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	150, 216
BstF5I	GGATG	4 cut(s)	106, 195, 295, 307
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 420
BstKTI	GATC	4 cut(s)	117, 137, 193, 494
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	4 cut(s)	114, 134, 190, 491
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	96, 469
BstSFI	CTRYAG	1 cut(s)	360
BstV2I	GAAGAC	2 cut(s)	14, 76
BstX2I	RGATCY	2 cut(s)	134, 491
BstYI	RGATCY	2 cut(s)	134, 491
BsuRI	GGCC	4 cut(s)	440, 469, 587, 693
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	106, 195, 295, 307
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	2 cut(s)	54, 420
Cfr13I	GGNCC	2 cut(s)	438, 585
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	5 cut(s)	22, 147, 181, 398, 446
CviAII	CATG	4 cut(s)	248, 260, 401, 717
CviQI	GTAC	5 cut(s)	22, 147, 181, 398, 446
DdeI	CTNAG	2 cut(s)	150, 216
DpnI	GATC	4 cut(s)	116, 136, 192, 493
DpnII	GATC	4 cut(s)	114, 134, 190, 491
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco147I	AGGCCT	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	265
FaeI	CATG	4 cut(s)	251, 263, 404, 720
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	4 cut(s)	247, 259, 400, 716
FblI	GTMKAC	1 cut(s)	75
FokI	GGATG	4 cut(s)	113, 182, 294, 302
FspBI	CTAG	2 cut(s)	210, 591
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	2 cut(s)	53, 419
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	440, 469, 587, 693
HapII	CCGG	2 cut(s)	97, 499
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	2 cut(s)	54, 420
Hin1II	CATG	4 cut(s)	251, 263, 404, 720
Hin6I	GCGC	2 cut(s)	52, 418
HinP1I	GCGC	2 cut(s)	52, 418
HincII	GTYRAC	3 cut(s)	106, 127, 634
HindII	GTYRAC	3 cut(s)	106, 127, 634
HindIII	AAGCTT	2 cut(s)	221, 325
HinfI	GANTC	1 cut(s)	409
HpaII	CCGG	2 cut(s)	97, 499
Hpy166II	GTNNAC	5 cut(s)	76, 106, 127, 398, 634
Hpy188I	TCNGA	5 cut(s)	481, 567, 662, 670, 687
Hpy188III	TCNNGA	4 cut(s)	188, 334, 521, 591
Hpy8I	GTNNAC	5 cut(s)	76, 106, 127, 398, 634
HpyCH4III	ACNGT	4 cut(s)	26, 146, 185, 342
HpyCH4V	TGCA	4 cut(s)	172, 263, 293, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	2 cut(s)	150, 216
Hsp92II	CATG	4 cut(s)	251, 263, 404, 720
HspAI	GCGC	2 cut(s)	52, 418
Kzo9I	GATC	4 cut(s)	114, 134, 190, 491
LmnI	GCTCC	1 cut(s)	175
LweI	GCATC	5 cut(s)	100, 204, 272, 280, 343
MaeI	CTAG	2 cut(s)	210, 591
MaeIII	GTNAC	4 cut(s)	185, 300, 364, 709
MalI	GATC	4 cut(s)	116, 136, 192, 493
MboI	GATC	4 cut(s)	114, 134, 190, 491
MboII	GAAGA	6 cut(s)	19, 25, 76, 536, 623, 695
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	2 cut(s)	134, 491
MluCI	AATT	4 cut(s)	167, 271, 648, 672
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	7 cut(s)	65, 77, 80, 89, 598, 607, 656
Mph1103I	ATGCAT	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	1 cut(s)	384
MspI	CCGG	2 cut(s)	97, 499
MspR9I	CCNGG	2 cut(s)	98, 471
MunI	CAATTG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	466
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	4 cut(s)	114, 134, 190, 491
NlaIII	CATG	4 cut(s)	251, 263, 404, 720
NlaIV	GGNNCC	4 cut(s)	136, 373, 439, 618
NmuCI	GTSAC	2 cut(s)	185, 300
NsbI	TGCGCA	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 78
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	409
PfoI	TCCNGGA	1 cut(s)	96
Ple19I	CGATCG	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	4 cut(s)	136, 373, 439, 618
PspPI	GGNCC	2 cut(s)	438, 585
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	134, 491
PvuI	CGATCG	1 cut(s)	193
RsaI	GTAC	5 cut(s)	23, 148, 182, 399, 447
RsaNI	GTAC	5 cut(s)	22, 147, 181, 398, 446
SaqAI	TTAA	1 cut(s)	384
Sau3AI	GATC	4 cut(s)	114, 134, 190, 491
Sau96I	GGNCC	2 cut(s)	438, 585
ScrFI	CCNGG	2 cut(s)	98, 471
SfaNI	GCATC	5 cut(s)	100, 204, 272, 280, 343
SfcI	CTRYAG	1 cut(s)	360
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	4 cut(s)	167, 271, 648, 672
SseBI	AGGCCT	1 cut(s)	693
SspMI	CTAG	2 cut(s)	210, 591
StuI	AGGCCT	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	96, 469
TaaI	ACNGT	4 cut(s)	26, 146, 185, 342
TaqI	TCGA	2 cut(s)	609, 678
TasI	AATT	4 cut(s)	167, 271, 648, 672
TatI	WGTACW	3 cut(s)	21, 397, 445
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseFI	GTSAC	2 cut(s)	185, 300
Tsp45I	GTSAC	2 cut(s)	185, 300
TspDTI	ATGAA	2 cut(s)	236, 319
XapI	RAATTY	1 cut(s)	648
XbaI	TCTAGA	1 cut(s)	590
XceI	RCATGY	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	2 cut(s)	210, 591
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.