pycom06g11560

Dolichol-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016586
Physical Location & Seq
Reverse (-)
16826076 .. 16829102
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11560.8

Sequence Viewer

Length: 915 bp
ATGCTGGGCCTACATTATTCCAGAATTGCGCGGGTTACCTCTCCAACCCAACCGGAAGCTGAACCGGGCCCGAACTCTCCCTTTCCAGAACCACAAAAATTGATTTTTCTTTCTCCAAATAACTTTTCCTTCTGTTTTCCCTACGGCGATGCGCCTGAGATCGAATTGAAAATCGGCGAACGAGAAATTGAGCGAAAAATGGAGACGAAGAACAAGTACAGCATCATAGTCCCGACCTACAACGAGCGCCTCAACATCGCCCTCCTCGTCTACCTCGTCTTCAAGCATCTCCGGGATGTTGACTTTGAGATAATCGTCGTTGACGATGGAAGCCCCGACGGCACTCAGGAGATTGTTGAACAGTTGCAGCAACTCTACGGTCACGATCGCATCCTGTTGAGAGCTAGAGCTAAGAAGCTTGGGTTAGGAACGGCTTACATTCATGGTTTGAAGCATGCTTCCGGGAACTTTGTTGTGATCATGGACGCAGATTTATCACATCACCCAAAGTATTTGCCAAGCTTCATCAAGAAACATCTGGAAACTGGTGCAAGTATAGTTACTGGAACTCGTTATGTCAGAGGTGGCGGGGTCCATGGATGGAATCTTATGCGCAAACTAACAAGTAGAGGAGCCAATGTTCTTGCACACACACTACTATGGCCTGGTGTATCAGATTTGACTGGATCATTTCGGCTTTACAGGAAAACAGTGCTTGAAGATATCATTAGTTCCTGTGTCAGCAAGGGCTACGTCTTTCAGATGGAGATGATAGTTCGTGCTTCTAGAAAAGGATACCATATCGAAGAGGTTCCAATCAGTTTTGTTGACAGGGTATATGGAATTTCAAAGCTTGGAGGATCTGAAATTGTCGAATATCTGAAAGGCCTCGCCTATCTTCTCGTTACAACATGA

Protein Analysis

305

Amino Acids

34.21

Weight (kDa)

8.85

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016586)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20575
fragaria_vesca FvH4_5g10320
malus_domestica MD06G1125000.v1.1
prunus_persica Prupe.5G135600_v2.0.a1
pyrus_communis pycom06g11560
rosa_chinensis RchiOBHm_Chr7g0187901
rosa_laevigata RLG00000004749
rosa_multiflora Rmu_sc0022114.1_g000004
rosa_roxburghii Rroxscaffold_3G00266960
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090400 Rh7BG092000 Rh7CG091100
rosa_wichuraiana Rw7G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 614
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 31
AciI CCGC 2 cut(s) 31, 588
AclWI GGATC 2 cut(s) 694, 868
AcsI RAATTY 1 cut(s) 843
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 6 cut(s) 169, 283, 359, 451, 719, 849
AjnI CCWGG 1 cut(s) 664
AjuI GAANNNNNNNTTGG 2 cut(s) 109, 141
AloI GAACNNNNNNTCC 2 cut(s) 624, 656
AluBI AGCT 6 cut(s) 59, 404, 410, 418, 522, 853
AluI AGCT 6 cut(s) 59, 404, 410, 418, 522, 853
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 694, 868
AoxI GGCC 4 cut(s) 7, 67, 662, 886
ApaI GGGCCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 4 cut(s) 31, 154, 249, 615
AspS9I GGNCC 4 cut(s) 7, 67, 68, 592
AsuC2I CCSGG 3 cut(s) 66, 293, 463
AsuHPI GGTGA 1 cut(s) 494
AvaII GGWCC 1 cut(s) 592
BaeGI GKGCMC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbsI GAAGAC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 379
BccI CCATC 3 cut(s) 320, 594, 757
BceAI ACGGC 3 cut(s) 160, 355, 447
BciT130I CCWGG 1 cut(s) 666
BciVI GTATCC 1 cut(s) 788
BclI TGATCA 1 cut(s) 477
BcnI CCSGG 3 cut(s) 66, 293, 463
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 405, 786
BfoI RGCGCY 1 cut(s) 250
BfuI GTATCC 1 cut(s) 788
BglI GCCNNNNNGGC 1 cut(s) 339
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 4 cut(s) 66, 293, 463, 666
Bme18I GGWCC 1 cut(s) 592
BmgT120I GGNCC 4 cut(s) 7, 67, 68, 592
BmiI GGNNCC 4 cut(s) 69, 593, 634, 813
BmrFI CCNGG 4 cut(s) 66, 293, 463, 666
BmsI GCATC 4 cut(s) 139, 231, 295, 399
BpiI GAAGAC 1 cut(s) 271
BpuMI CCSGG 3 cut(s) 66, 293, 463
BsaJI CCNNGG 1 cut(s) 595
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bse1I ACTGG 3 cut(s) 550, 568, 688
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 1 cut(s) 595
BseGI GGATG 3 cut(s) 301, 390, 605
BseMII CTCAG 2 cut(s) 147, 359
BseNI ACTGG 3 cut(s) 550, 568, 688
BseRI GAGGAG 2 cut(s) 254, 645
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 4 cut(s) 9, 69, 664, 888
BsiEI CGRYCG 1 cut(s) 388
BsiSI CCGG 4 cut(s) 53, 65, 292, 462
BslFI GGGAC 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 4 cut(s) 9, 69, 664, 888
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 5 cut(s) 159, 385, 477, 686, 860
Bsp19I CCATGG 1 cut(s) 595
BspACI CCGC 2 cut(s) 31, 588
BspANI GGCC 4 cut(s) 9, 69, 664, 888
BspCNI CTCAG 2 cut(s) 148, 358
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 4 cut(s) 69, 593, 634, 813
BspPI GGATC 2 cut(s) 694, 868
BsrI ACTGG 3 cut(s) 550, 568, 688
BssECI CCNNGG 1 cut(s) 595
BssMI GATC 5 cut(s) 159, 385, 477, 686, 860
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 3 cut(s) 363, 380, 712
Bst6I CTCTTC 1 cut(s) 801
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 3 cut(s) 156, 345, 411
BstDSI CCRYGG 1 cut(s) 595
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 3 cut(s) 301, 390, 605
BstFNI CGCG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 4 cut(s) 31, 154, 249, 615
BstKTI GATC 5 cut(s) 162, 388, 480, 689, 863
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 5 cut(s) 159, 385, 477, 686, 860
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 458
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 4 cut(s) 64, 291, 461, 664
BstSLI GKGCMC 1 cut(s) 71
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 860
BstYI RGATCY 1 cut(s) 860
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 4 cut(s) 9, 69, 664, 888
BtgI CCRYGG 1 cut(s) 595
BtgZI GCGATG 2 cut(s) 162, 241
BtsCI GGATG 3 cut(s) 301, 390, 605
BtsIMutI CAGTG 1 cut(s) 717
Cac8I GCNNGC 1 cut(s) 456
CfoI GCGC 4 cut(s) 31, 154, 249, 615
Cfr13I GGNCC 4 cut(s) 7, 67, 68, 592
CseI GACGC 1 cut(s) 494
Csp6I GTAC 1 cut(s) 217
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviAII CATG 5 cut(s) 443, 455, 481, 596, 912
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 3 cut(s) 156, 345, 411
DpnI GATC 5 cut(s) 161, 387, 479, 688, 862
DpnII GATC 5 cut(s) 159, 385, 477, 686, 860
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Eco130I CCWWGG 1 cut(s) 595
Eco147I AGGCCT 1 cut(s) 888
Eco24I GRGCYC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 592
Eco91I GGTNACC 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 664
EcoRV GATATC 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 595
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 5 cut(s) 446, 458, 484, 599, 915
FaqI GGGAC 1 cut(s) 215
FatI CATG 5 cut(s) 442, 454, 480, 595, 911
FauI CCCGC 2 cut(s) 24, 581
FbaI TGATCA 1 cut(s) 477
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 3 cut(s) 308, 377, 612
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 2 cut(s) 405, 786
FspI TGCGCA 1 cut(s) 614
GlaI GCGC 4 cut(s) 30, 153, 248, 614
GluI GCNGC 1 cut(s) 368
GsaI CCCAGC 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 4 cut(s) 9, 69, 664, 888
HapII CCGG 4 cut(s) 53, 65, 292, 462
HgaI GACGC 1 cut(s) 494
HhaI GCGC 4 cut(s) 31, 154, 249, 615
Hin1II CATG 5 cut(s) 446, 458, 484, 599, 915
Hin6I GCGC 4 cut(s) 29, 152, 247, 613
HinP1I GCGC 4 cut(s) 29, 152, 247, 613
HincII GTYRAC 3 cut(s) 301, 322, 829
HindII GTYRAC 3 cut(s) 301, 322, 829
HindIII AAGCTT 3 cut(s) 416, 520, 851
HinfI GANTC 1 cut(s) 604
HpaII CCGG 4 cut(s) 53, 65, 292, 462
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 4 cut(s) 271, 301, 322, 829
Hpy188I TCNGA 5 cut(s) 581, 676, 762, 865, 882
Hpy188III TCNNGA 8 cut(s) 21, 86, 232, 347, 383, 529, 539, 786
Hpy8I GTNNAC 4 cut(s) 271, 301, 322, 829
Hpy99I CGWCG 2 cut(s) 320, 341
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 3 cut(s) 363, 380, 712
HpyCH4IV ACGT 1 cut(s) 753
HpyCH4V TGCA 3 cut(s) 367, 551, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 3 cut(s) 156, 345, 411
HpySE526I ACGT 1 cut(s) 753
Hsp92II CATG 5 cut(s) 446, 458, 484, 599, 915
HspAI GCGC 4 cut(s) 29, 152, 247, 613
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 5 cut(s) 159, 385, 477, 686, 860
LmnI GCTCC 1 cut(s) 632
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 4 cut(s) 139, 231, 295, 399
MaeI CTAG 2 cut(s) 405, 786
MaeII ACGT 1 cut(s) 753
MaeIII GTNAC 4 cut(s) 34, 380, 559, 904
MalI GATC 5 cut(s) 161, 387, 479, 688, 862
MboI GATC 5 cut(s) 159, 385, 477, 686, 860
MboII GAAGA 5 cut(s) 220, 271, 731, 818, 890
MflI RGATCY 1 cut(s) 860
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 6 cut(s) 24, 98, 164, 186, 843, 867
MmeI TCCRAC 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 810
MslI CAYNNNNRTG 1 cut(s) 658
MspI CCGG 4 cut(s) 53, 65, 292, 462
MspR9I CCNGG 4 cut(s) 66, 293, 463, 666
MvaI CCWGG 1 cut(s) 666
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 339
NciI CCSGG 3 cut(s) 66, 293, 463
NcoI CCATGG 1 cut(s) 595
NdeII GATC 5 cut(s) 159, 385, 477, 686, 860
NlaIII CATG 5 cut(s) 446, 458, 484, 599, 915
NlaIV GGNNCC 4 cut(s) 69, 593, 634, 813
NmuCI GTSAC 1 cut(s) 380
NsbI TGCGCA 1 cut(s) 614
NspI RCATGY 1 cut(s) 458
PaeI GCATGC 1 cut(s) 458
PceI AGGCCT 1 cut(s) 888
PcsI WCGNNNNNNNCGW 3 cut(s) 264, 273, 321
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 1 cut(s) 604
PfoI TCCNGGA 2 cut(s) 291, 461
PkrI GCNGC 1 cut(s) 369
Ple19I CGATCG 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 664
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 4 cut(s) 69, 593, 634, 813
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 4 cut(s) 7, 67, 68, 592
PsuI RGATCY 1 cut(s) 860
PvuI CGATCG 1 cut(s) 388
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 658
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 5 cut(s) 159, 385, 477, 686, 860
Sau96I GGNCC 4 cut(s) 7, 67, 68, 592
ScrFI CCNGG 4 cut(s) 66, 293, 463, 666
SduI GDGCHC 1 cut(s) 71
SfaNI GCATC 4 cut(s) 139, 231, 295, 399
SinI GGWCC 1 cut(s) 592
SmiMI CAYNNNNRTG 1 cut(s) 658
SphI GCATGC 1 cut(s) 458
Sse9I AATT 6 cut(s) 24, 98, 164, 186, 843, 867
SseBI AGGCCT 1 cut(s) 888
SsiI CCGC 2 cut(s) 31, 588
SspMI CTAG 2 cut(s) 405, 786
StuI AGGCCT 1 cut(s) 888
StyD4I CCNGG 4 cut(s) 64, 291, 461, 664
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 3 cut(s) 363, 380, 712
TaiI ACGT 1 cut(s) 756
TaqI TCGA 3 cut(s) 162, 804, 873
TasI AATT 6 cut(s) 24, 98, 164, 186, 843, 867
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 604
TscAI CASTG 1 cut(s) 717
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 431, 514
TspRI CASTG 1 cut(s) 717
VpaK11BI GGWCC 1 cut(s) 592
XapI RAATTY 1 cut(s) 843
XbaI TCTAGA 1 cut(s) 785
XceI RCATGY 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 2 cut(s) 405, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.