Rh7AG090400

Dolichol-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016586
Physical Location & Seq
Reverse (-)
6877497 .. 6880114
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG090400.1

Sequence Viewer

Length: 681 bp
ATGGAGAAGACGAAGAACAAGTACAGTATCATAGTCCCAACCTATAACGAGCGCCTCAACATCGCCCTCCTCGTCTACCTCGTCTTCAAGCATCTCCGGGATGTTGACTTTGAGATCATCATTGTTGACGATGGATCCCCTGACGGTACTCAGCAGGTGGTTCAGCAATTGCAGGAGCTGTACGGTCACGATCGCATCCTGTTGAGAGCTAGAGCTAAGAAGCTTGGGTTGGGAACGGCTTACATTCATGGATTGAAGCATGCATCTGGCAATTTTGTTGTGATAATGGATGCAGATTTGTCACATCATCCAAAGTATTTACCAAGCTTCATCAAGAAACAGTTGGAGACTGATGCTACTATAGTTACTGGAACCCGTTATGTTAAAGGTGGGGGTGTACATGGGTGGAATCTTATGCGCAAACTAACAAGTAGGGGGGCCAATGTACTTGCACAGACGCTTTTATGGCCTGGCGTATCAGACTTGACAGGATCTTTCCGGCTTTATAGAAAATCAGCTCTTGAAGATATCATTAATTCCTGTGTCAGCAAGGGATATGTATTTCAGATGGAAATGATAGTTCGGGCCTCTAGAAAAGGCTACCATATCGAAGAGGTAGATAAAATTACATCATACATGTTTTCCTACCATGGCTTCTGGTTGAAACTGATAGTTCTATGA

Protein Analysis

226

Amino Acids

25.73

Weight (kDa)

9.44

Isoelectric Point (pI)

22.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 8 - 203 9.1e-10 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 9 - 177 5.4e-38 Glycosyl transferase family 2
Glyco_tranf_2_2 PF10111 9 - 105 1.5e-07 Glycosyltransferase like family 2
Glyco_transf_21 PF13506 81 - 177 2.7e-06 Glycosyl transferase family 21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016586)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20575
fragaria_vesca FvH4_5g10320
malus_domestica MD06G1125000.v1.1
prunus_persica Prupe.5G135600_v2.0.a1
pyrus_communis pycom06g11560
rosa_chinensis RchiOBHm_Chr7g0187901
rosa_laevigata RLG00000004749
rosa_multiflora Rmu_sc0022114.1_g000004
rosa_roxburghii Rroxscaffold_3G00266960
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090400 Rh7BG092000 Rh7CG091100
rosa_wichuraiana Rw7G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc16I TGCGCA 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 75
AclWI GGATC 3 cut(s) 129, 142, 499
AfaI GTAC 5 cut(s) 23, 148, 182, 399, 447
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 4 cut(s) 88, 256, 524, 664
AjnI CCWGG 1 cut(s) 469
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 6 cut(s) 178, 209, 215, 223, 327, 518
AluI AGCT 6 cut(s) 178, 209, 215, 223, 327, 518
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 3 cut(s) 129, 142, 499
AlwNI CAGNNNCTG 1 cut(s) 178
AoxI GGCC 3 cut(s) 438, 467, 585
AseI ATTAAT 1 cut(s) 534
AspLEI GCGC 2 cut(s) 54, 420
AspS9I GGNCC 2 cut(s) 438, 585
AsuC2I CCSGG 1 cut(s) 98
BamHI GGATCC 1 cut(s) 134
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbsI GAAGAC 2 cut(s) 14, 76
BccI CCATC 2 cut(s) 125, 562
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 471
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 2 cut(s) 210, 591
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 55
BfuAI ACCTGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 98, 471
BmgT120I GGNCC 2 cut(s) 438, 585
BmiI GGNNCC 3 cut(s) 136, 373, 439
BmrFI CCNGG 2 cut(s) 98, 471
BmsI GCATC 5 cut(s) 100, 204, 272, 280, 343
BpiI GAAGAC 2 cut(s) 14, 76
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 649
Bse1I ACTGG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 4 cut(s) 106, 195, 295, 307
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 3 cut(s) 440, 469, 587
BsiEI CGRYCG 1 cut(s) 193
BsiSI CCGG 2 cut(s) 97, 499
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 3 cut(s) 440, 469, 587
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 4 cut(s) 114, 134, 190, 491
Bsp19I CCATGG 1 cut(s) 649
BspANI GGCC 3 cut(s) 440, 469, 587
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 136, 373, 439
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 3 cut(s) 129, 142, 499
BsrGI TGTACA 1 cut(s) 397
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 4 cut(s) 114, 134, 190, 491
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 4 cut(s) 26, 146, 185, 342
Bst6I CTCTTC 1 cut(s) 606
BstAUI TGTACA 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 150, 216
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 4 cut(s) 106, 195, 295, 307
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 2 cut(s) 54, 420
BstKTI GATC 4 cut(s) 117, 137, 193, 494
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 4 cut(s) 114, 134, 190, 491
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 2 cut(s) 263, 640
BstSCI CCNGG 2 cut(s) 96, 469
BstSFI CTRYAG 1 cut(s) 360
BstV2I GAAGAC 2 cut(s) 14, 76
BstX2I RGATCY 2 cut(s) 134, 491
BstYI RGATCY 2 cut(s) 134, 491
BsuRI GGCC 3 cut(s) 440, 469, 587
BtgI CCRYGG 1 cut(s) 649
BtgZI GCGATG 1 cut(s) 46
BtsCI GGATG 4 cut(s) 106, 195, 295, 307
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 178
CfoI GCGC 2 cut(s) 54, 420
Cfr13I GGNCC 2 cut(s) 438, 585
CseI GACGC 1 cut(s) 466
Csp6I GTAC 5 cut(s) 22, 147, 181, 398, 446
CviAII CATG 5 cut(s) 248, 260, 401, 637, 650
CviQI GTAC 5 cut(s) 22, 147, 181, 398, 446
DdeI CTNAG 2 cut(s) 150, 216
DpnI GATC 4 cut(s) 116, 136, 192, 493
DpnII GATC 4 cut(s) 114, 134, 190, 491
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 649
Eco32I GATATC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 469
EcoRV GATATC 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 5 cut(s) 251, 263, 404, 640, 653
FaqI GGGAC 1 cut(s) 20
FatI CATG 5 cut(s) 247, 259, 400, 636, 649
FblI GTMKAC 1 cut(s) 75
FokI GGATG 4 cut(s) 113, 182, 294, 302
FspBI CTAG 2 cut(s) 210, 591
FspI TGCGCA 1 cut(s) 419
GlaI GCGC 2 cut(s) 53, 419
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 3 cut(s) 440, 469, 587
HapII CCGG 2 cut(s) 97, 499
HgaI GACGC 1 cut(s) 466
HhaI GCGC 2 cut(s) 54, 420
Hin1II CATG 5 cut(s) 251, 263, 404, 640, 653
Hin6I GCGC 2 cut(s) 52, 418
HinP1I GCGC 2 cut(s) 52, 418
HincII GTYRAC 2 cut(s) 106, 127
HindII GTYRAC 2 cut(s) 106, 127
HindIII AAGCTT 2 cut(s) 221, 325
HinfI GANTC 1 cut(s) 409
HpaII CCGG 2 cut(s) 97, 499
Hpy166II GTNNAC 4 cut(s) 76, 106, 127, 398
Hpy188I TCNGA 2 cut(s) 481, 567
Hpy188III TCNNGA 4 cut(s) 188, 334, 521, 591
Hpy8I GTNNAC 4 cut(s) 76, 106, 127, 398
HpyCH4III ACNGT 4 cut(s) 26, 146, 185, 342
HpyCH4V TGCA 4 cut(s) 172, 263, 293, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HpyF3I CTNAG 2 cut(s) 150, 216
Hsp92II CATG 5 cut(s) 251, 263, 404, 640, 653
HspAI GCGC 2 cut(s) 52, 418
Kzo9I GATC 4 cut(s) 114, 134, 190, 491
LmnI GCTCC 1 cut(s) 175
LweI GCATC 5 cut(s) 100, 204, 272, 280, 343
MaeI CTAG 2 cut(s) 210, 591
MaeIII GTNAC 3 cut(s) 185, 300, 364
MalI GATC 4 cut(s) 116, 136, 192, 493
MboI GATC 4 cut(s) 114, 134, 190, 491
MboII GAAGA 5 cut(s) 19, 25, 76, 536, 623
MfeI CAATTG 1 cut(s) 167
MflI RGATCY 2 cut(s) 134, 491
MluCI AATT 4 cut(s) 167, 271, 535, 624
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 6 cut(s) 65, 77, 80, 89, 598, 607
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 2 cut(s) 384, 534
MspI CCGG 2 cut(s) 97, 499
MspR9I CCNGG 2 cut(s) 98, 471
MunI CAATTG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 466
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 649
NdeII GATC 4 cut(s) 114, 134, 190, 491
NlaIII CATG 5 cut(s) 251, 263, 404, 640, 653
NlaIV GGNNCC 3 cut(s) 136, 373, 439
NmuCI GTSAC 2 cut(s) 185, 300
NsbI TGCGCA 1 cut(s) 419
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 2 cut(s) 263, 640
PaeI GCATGC 1 cut(s) 263
PaqCI CACCTGC 1 cut(s) 145
PciI ACATGT 1 cut(s) 636
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 78
PfeI GAWTC 1 cut(s) 409
PfoI TCCNGGA 1 cut(s) 96
Ple19I CGATCG 1 cut(s) 193
PscI ACATGT 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 136, 373, 439
PspPI GGNCC 2 cut(s) 438, 585
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 2 cut(s) 134, 491
PvuI CGATCG 1 cut(s) 193
RsaI GTAC 5 cut(s) 23, 148, 182, 399, 447
RsaNI GTAC 5 cut(s) 22, 147, 181, 398, 446
SaqAI TTAA 2 cut(s) 384, 534
Sau3AI GATC 4 cut(s) 114, 134, 190, 491
Sau96I GGNCC 2 cut(s) 438, 585
ScrFI CCNGG 2 cut(s) 98, 471
SfaNI GCATC 5 cut(s) 100, 204, 272, 280, 343
SfcI CTRYAG 1 cut(s) 360
SphI GCATGC 1 cut(s) 263
Sse9I AATT 4 cut(s) 167, 271, 535, 624
SspMI CTAG 2 cut(s) 210, 591
StyD4I CCNGG 2 cut(s) 96, 469
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 4 cut(s) 26, 146, 185, 342
TaqI TCGA 1 cut(s) 609
TasI AATT 4 cut(s) 167, 271, 535, 624
TatI WGTACW 3 cut(s) 21, 397, 445
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 2 cut(s) 384, 534
Tru9I TTAA 2 cut(s) 384, 534
TseFI GTSAC 2 cut(s) 185, 300
Tsp45I GTSAC 2 cut(s) 185, 300
TspDTI ATGAA 2 cut(s) 236, 319
VspI ATTAAT 1 cut(s) 534
XbaI TCTAGA 1 cut(s) 590
XceI RCATGY 2 cut(s) 263, 640
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 2 cut(s) 210, 591
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.