Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016586

Physical Location & Seq

Genomic Coordinates Reverse (-)

12869500 .. 12872729

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGAAGAACAAGTACAGCATCATAGTCCCAACCTATAACGAACGCCTCAACATTGCCCTCCTCGTCTACCTCATCTTCAAGCATCTCCGGGACGTTGACTTTGAGATAATCATCGTTGACGATGGAAGCCCGGATGGTACTCAGCAGGTTGTTGAGCAATTGCAGCAACTCTATGGTGAAGATCGGATTCTGTTGAGAGCTAGAGCTAAGAAGCTTGGATTAGGAACGGCTTACATTCATGGTTTGAAGCATGCGTCTGGGAATTTTGTTGTGATCATGGACGCGGATTTATCACACCATCCAAAGTATTTGCCAAGCTTCATCAAGAAACAGTTGGAAACTGGTGCAAGTATAGTTACTGGAACTCGTTATGTCAAAGGTGGGGGTGTACATGGGTGGAATCTTATGCGCAAATTAACAAGTAGAGGAGCCAATGTTCTGGCACAAACACTTCTATGGCCTGGTGTATCAGATTTGACCGGATCTTTTCGGCTTTACAGGAAATCAGTGCTTGAAGATATCATCAGTTCCTGTGTCAGCAAGGGCTATGTCTTTCAGATGGAGATGATAGTTCGAGCTTCTAGAAAAGGCTACCATATTGAAGAGGTTCCAATCAGCTTTGTTGATAGGGTATATGGAATTTCAAAGCTTGGAGGATCTGAAATTGTTGAATATCTGAAAGGCCTTGCCTATCTTCTCGTTACAACCCAGCTCTTCCACTTCACAAAACTCTTCATGAACTGCCGGAAAAAATTGCCGGAACTCAGCATGGTGGGAATACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0012505 GO:0031501 GO:0032991 GO:0033185 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0060359 GO:1901698 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glycos_transf_2

Protein Analysis

263

Amino Acids

29.56

Weight (kDa)

9.41

Isoelectric Point (pI)

21.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20575
fragaria_vesca	FvH4_5g10320
malus_domestica	MD06G1125000.v1.1
prunus_persica	Prupe.5G135600_v2.0.a1
pyrus_communis	pycom06g11560
rosa_chinensis	RchiOBHm_Chr7g0187901
rosa_laevigata	RLG00000004749
rosa_multiflora	Rmu_sc0022114.1_g000004
rosa_roxburghii	Rroxscaffold_3G00266960
rosa_rugosa	Rorug06G0485300
rosa_samantha	Rh7AG090400 Rh7BG092000 Rh7CG091100
rosa_wichuraiana	Rw7G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	287
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	2 cut(s)	493, 667
AcsI	RAATTY	2 cut(s)	265, 642
AfaI	GTAC	3 cut(s)	17, 142, 393
AgsI	TTSAA	6 cut(s)	82, 250, 518, 605, 648, 674
AjnI	CCWGG	1 cut(s)	463
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
AluBI	AGCT	8 cut(s)	203, 209, 217, 321, 581, 621, 652, 715
AluI	AGCT	8 cut(s)	203, 209, 217, 321, 581, 621, 652, 715
AlwI	GGATC	2 cut(s)	493, 667
AlwNI	CAGNNNCTG	1 cut(s)	534
AoxI	GGCC	2 cut(s)	461, 685
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	265, 642
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	414
AsuC2I	CCSGG	2 cut(s)	92, 134
AsuHPI	GGTGA	1 cut(s)	191
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	4 cut(s)	119, 131, 309, 556
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	465
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	92, 134
BfaI	CTAG	2 cut(s)	204, 585
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	3 cut(s)	92, 134, 465
BmiI	GGNNCC	2 cut(s)	433, 612
BmrFI	CCNGG	3 cut(s)	92, 134, 465
BmsI	GCATC	2 cut(s)	30, 94
BpuMI	CCSGG	2 cut(s)	92, 134
BsaBI	GATNNNNATC	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bse1I	ACTGG	2 cut(s)	349, 367
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	142, 301
BseJI	GATNNNNATC	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	158, 781
BseNI	ACTGG	2 cut(s)	349, 367
BseRI	GAGGAG	2 cut(s)	53, 444
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	711
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	2 cut(s)	463, 687
BsiSI	CCGG	5 cut(s)	91, 134, 483, 748, 761
BslFI	GGGAC	2 cut(s)	14, 107
BsmFI	GGGAC	2 cut(s)	14, 107
BsnI	GGCC	2 cut(s)	463, 687
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	184, 276, 485, 659
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	2 cut(s)	463, 687
BspCNI	CTCAG	2 cut(s)	157, 780
BspFNI	CGCG	1 cut(s)	287
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	2 cut(s)	433, 612
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	493, 667
BspQI	GCTCTTC	1 cut(s)	722
BsrDI	GCAATG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	349, 367
BssMI	GATC	4 cut(s)	184, 276, 485, 659
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	336
Bst6I	CTCTTC	3 cut(s)	600, 722, 740
BstAUI	TGTACA	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	144, 210, 767
BstF5I	GGATG	2 cut(s)	142, 301
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	4 cut(s)	187, 279, 488, 662
BstMBI	GATC	4 cut(s)	184, 276, 485, 659
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	90, 132, 463
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	2 cut(s)	485, 659
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	2 cut(s)	485, 659
BsuRI	GGCC	2 cut(s)	463, 687
BtsCI	GGATG	2 cut(s)	142, 301
BtsIMutI	CAGTG	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	534
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	1 cut(s)	414
CseI	GACGC	2 cut(s)	246, 293
Csp6I	GTAC	3 cut(s)	16, 141, 392
CviAII	CATG	6 cut(s)	242, 254, 280, 395, 739, 772
CviQI	GTAC	3 cut(s)	16, 141, 392
DdeI	CTNAG	3 cut(s)	144, 210, 767
DpnI	GATC	4 cut(s)	186, 278, 487, 661
DpnII	GATC	4 cut(s)	184, 276, 485, 659
Eam1104I	CTCTTC	3 cut(s)	600, 722, 740
EarI	CTCTTC	3 cut(s)	600, 722, 740
Eco147I	AGGCCT	1 cut(s)	687
Eco32I	GATATC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	523
FaeI	CATG	6 cut(s)	245, 257, 283, 398, 742, 775
FaqI	GGGAC	2 cut(s)	14, 107
FatI	CATG	6 cut(s)	241, 253, 279, 394, 738, 771
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	149, 288
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	2 cut(s)	204, 585
FspI	TGCGCA	1 cut(s)	413
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	167
GsaI	CCCAGC	1 cut(s)	715
HaeIII	GGCC	2 cut(s)	463, 687
HapII	CCGG	5 cut(s)	91, 134, 483, 748, 761
HgaI	GACGC	2 cut(s)	246, 293
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	6 cut(s)	245, 257, 283, 398, 742, 775
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	2 cut(s)	100, 121
HindII	GTYRAC	2 cut(s)	100, 121
HindIII	AAGCTT	3 cut(s)	215, 319, 650
HinfI	GANTC	2 cut(s)	190, 403
HpaII	CCGG	5 cut(s)	91, 134, 483, 748, 761
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	4 cut(s)	70, 100, 121, 392
Hpy188I	TCNGA	5 cut(s)	189, 475, 561, 664, 681
Hpy188III	TCNNGA	3 cut(s)	328, 585, 739
Hpy8I	GTNNAC	4 cut(s)	70, 100, 121, 392
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	166, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	144, 210, 767
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	6 cut(s)	245, 257, 283, 398, 742, 775
HspAI	GCGC	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	184, 276, 485, 659
LguI	GCTCTTC	1 cut(s)	722
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	30, 94
MaeI	CTAG	2 cut(s)	204, 585
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	358, 703
MalI	GATC	4 cut(s)	186, 278, 487, 661
MboI	GATC	4 cut(s)	184, 276, 485, 659
MboII	GAAGA	8 cut(s)	19, 70, 194, 530, 617, 689, 709, 727
MfeI	CAATTG	1 cut(s)	161
MflI	RGATCY	2 cut(s)	485, 659
MluCI	AATT	6 cut(s)	161, 265, 416, 642, 666, 755
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	7 cut(s)	59, 71, 74, 83, 422, 601, 650
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	5 cut(s)	91, 134, 483, 748, 761
MspR9I	CCNGG	3 cut(s)	92, 134, 465
MunI	CAATTG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	166
NciI	CCSGG	2 cut(s)	92, 134
NdeII	GATC	4 cut(s)	184, 276, 485, 659
NlaIII	CATG	6 cut(s)	245, 257, 283, 398, 742, 775
NlaIV	GGNNCC	2 cut(s)	433, 612
NsbI	TGCGCA	1 cut(s)	413
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	687
PciSI	GCTCTTC	1 cut(s)	722
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	2 cut(s)	190, 403
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	433, 612
PstNI	CAGNNNCTG	1 cut(s)	534
PsuI	RGATCY	2 cut(s)	485, 659
RsaI	GTAC	3 cut(s)	17, 142, 393
RsaNI	GTAC	3 cut(s)	16, 141, 392
RseI	CAYNNNNRTG	1 cut(s)	457
SapI	GCTCTTC	1 cut(s)	722
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	4 cut(s)	184, 276, 485, 659
ScrFI	CCNGG	3 cut(s)	92, 134, 465
SfaNI	GCATC	2 cut(s)	30, 94
SmiMI	CAYNNNNRTG	1 cut(s)	457
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	6 cut(s)	161, 265, 416, 642, 666, 755
SseBI	AGGCCT	1 cut(s)	687
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	2 cut(s)	204, 585
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	3 cut(s)	90, 132, 463
TaaI	ACNGT	1 cut(s)	336
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	577
TasI	AATT	6 cut(s)	161, 265, 416, 642, 666, 755
TatI	WGTACW	2 cut(s)	15, 391
TfiI	GAWTC	2 cut(s)	190, 403
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	1 cut(s)	166
TspDTI	ATGAA	4 cut(s)	230, 313, 727, 755
TspRI	CASTG	1 cut(s)	516
XapI	RAATTY	2 cut(s)	265, 642
XbaI	TCTAGA	1 cut(s)	584
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	2 cut(s)	204, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.