FvH4_5g11530

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
6542552 .. 6543688
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11530.t1

Sequence Viewer

Length: 336 bp
ATGAAAAACAGTCATGGTTGCCATTCCCTTACAGGCCTATATATAGGAGCACAAGCCCCTCTACTTTTAATCTCAATGTGCCTTTTGTGCATTATCATGGATTCTAGTTTTAAAACCACTGCTGTCATTCTCTTACTCTTTATAGGCATTTGTGCAGCAGGAAGAGATGCCAAAGGCTTCAGGAATGTTGTAAACCCTACCAAGCCATCAACAGAGGTGATTGTGGAAATGAAGATGAGAGATCTGACAGAAATTGATGCTTTTTTGGACTATGAAAAGCCAATACCAAATCCTAGGCATGAAAAGGGGAGGCCAGGTGGTGGTGCTAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.07

Weight (kDa)

8.76

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017664)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11530
malus_domestica MD06G1112300.v1.1 MD14G1133800.v1.1
prunus_persica Prupe.5G125600_v2.0.a1
pyrus_communis pycom06g10530
rosa_roxburghii Rroxscaffold_3G00268300
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068500 Rh7BG084200 Rh7CG079600 Rh7DG080100
rosa_wichuraiana Rw7G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 320
AjnI CCWGG 1 cut(s) 313
Alw21I GWGCWC 1 cut(s) 52
AoxI GGCC 2 cut(s) 34, 311
ApeKI GCWGC 1 cut(s) 155
AspA2I CCTAGG 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 229
AvrII CCTAGG 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 315
BfaI CTAG 2 cut(s) 105, 294
BglII AGATCT 1 cut(s) 241
BisI GCNGC 1 cut(s) 156
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 157, 247
BsaJI CCNNGG 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 2 cut(s) 36, 313
BsiHKAI GWGCWC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 320
BsnI GGCC 2 cut(s) 36, 313
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 241
BspANI GGCC 2 cut(s) 36, 313
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 157
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 2 cut(s) 36, 313
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
CviAII CATG 3 cut(s) 14, 97, 299
CviJI RGCY 6 cut(s) 36, 56, 177, 205, 280, 313
CviKI_1 RGCY 6 cut(s) 36, 56, 177, 205, 280, 313
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
DraI TTTAAA 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 293
Eco147I AGGCCT 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 3 cut(s) 17, 100, 302
FaiI YATR 8 cut(s) 15, 40, 42, 44, 98, 143, 273, 300
FatI CATG 3 cut(s) 13, 96, 298
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 2 cut(s) 105, 294
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 2 cut(s) 36, 313
Hin1II CATG 3 cut(s) 17, 100, 302
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 90, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
Hsp92II CATG 3 cut(s) 17, 100, 302
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 18, 144, 166, 300, 327
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 2 cut(s) 157, 247
MaeI CTAG 2 cut(s) 105, 294
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 2 cut(s) 174, 244
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 252
MnlI CCTC 3 cut(s) 69, 208, 303
MseI TTAA 2 cut(s) 68, 111
MslI CAYNNNNRTG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeII GATC 1 cut(s) 241
NlaIII CATG 3 cut(s) 17, 100, 302
PceI AGGCCT 1 cut(s) 36
PfeI GAWTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 2 cut(s) 68, 111
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 52
SetI ASST 2 cut(s) 219, 319
SfaNI GCATC 2 cut(s) 157, 247
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 1 cut(s) 252
SseBI AGGCCT 1 cut(s) 36
SspMI CTAG 2 cut(s) 105, 294
StuI AGGCCT 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 11
TasI AATT 1 cut(s) 252
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 68, 111
Tru9I TTAA 2 cut(s) 68, 111
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 17, 245, 288, 315
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 320
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 2 cut(s) 105, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.