Prupe.5G125600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
12320296 .. 12321291
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G125600.1

Sequence Viewer

Length: 231 bp
ATGGATACCAATATCAAAACCTGTCTTCTCCTTCTCTTGCTCTTTCTCGACACTTCTTCAGGCAGCAGAGTGAAGGGCTTTAGACATGTTATATATCCTGCAAATCCACCAAGAGAGGTCATTGGTGACATGGAGATGAGAGAGCTCATTGCAGCTCATGCTATGTTGGACTACGAAAAGCCAATACCAAACCCAAGGCACGAAAAAGGGAGGCCAGGTGGTGGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.5

Weight (kDa)

7.95

Isoelectric Point (pI)

22.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017664)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11530
malus_domestica MD06G1112300.v1.1 MD14G1133800.v1.1
prunus_persica Prupe.5G125600_v2.0.a1
pyrus_communis pycom06g10530
rosa_roxburghii Rroxscaffold_3G00268300
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068500 Rh7BG084200 Rh7CG079600 Rh7DG080100
rosa_wichuraiana Rw7G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 85
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 145, 155
AluI AGCT 2 cut(s) 145, 155
Alw21I GWGCWC 1 cut(s) 147
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 63, 152
AsuHPI GGTGA 1 cut(s) 137
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 75, 164
BciT130I CCWGG 1 cut(s) 216
BisI GCNGC 2 cut(s) 64, 153
BlsI GCNGC 2 cut(s) 65, 154
Bme1390I CCNGG 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 75, 164
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 221
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 147
BspANI GGCC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 75, 164
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 214
CviAII CATG 3 cut(s) 86, 130, 158
CviJI RGCY 5 cut(s) 78, 145, 155, 181, 214
CviKI_1 RGCY 5 cut(s) 78, 145, 155, 181, 214
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 3 cut(s) 89, 133, 161
FaiI YATR 6 cut(s) 87, 92, 94, 131, 159, 164
FatI CATG 3 cut(s) 85, 129, 157
Fnu4HI GCNGC 2 cut(s) 64, 153
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 64, 153
GluI GCNGC 2 cut(s) 64, 153
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 3 cut(s) 89, 133, 161
HphI GGTGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 41, 67
HpyCH4V TGCA 2 cut(s) 101, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 3 cut(s) 89, 133, 161
LpnPI CCDG 4 cut(s) 34, 45, 111, 201
Lsp1109I GCAGC 2 cut(s) 75, 164
MaeIII GTNAC 1 cut(s) 125
MboII GAAGA 2 cut(s) 17, 48
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 226
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 109, 204
MslI CAYNNNNRTG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 158
NlaIII CATG 3 cut(s) 89, 133, 161
NmuCI GTSAC 1 cut(s) 125
NspI RCATGY 1 cut(s) 89
PciI ACATGT 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 2 cut(s) 65, 154
PscI ACATGT 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 147
SatI GCNGC 2 cut(s) 64, 153
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 147
SetI ASST 5 cut(s) 23, 120, 147, 157, 220
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 1 cut(s) 226
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 194
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 226
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 2 cut(s) 63, 152
Tsp45I GTSAC 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 221
XceI RCATGY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.