Rh7AG068500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
4772610 .. 4774315
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG068500.1

Sequence Viewer

Length: 237 bp
ATGGATTCTAGTTTTAAAACCATTGCTGTCATTCTTTTACTCTTTATAGGCATTTGTGCAGGAAGAGATGCCAAAGGACTCAGGAATGTTGTAAACCCTACAAACCCATCAACAGAGGTGATTGTGGAAATGAAGATGAGAGACCTGACAGAAATTGATGCTTTTGTGGACTATGAAAAGCCAATACCAAATCCTAGGCATGAAAAAGGGAAGCCAGTTGGTGGTCCTAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.59

Weight (kDa)

7.88

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017664)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11530
malus_domestica MD06G1112300.v1.1 MD14G1133800.v1.1
prunus_persica Prupe.5G125600_v2.0.a1
pyrus_communis pycom06g10530
rosa_roxburghii Rroxscaffold_3G00268300
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068500 Rh7BG084200 Rh7CG079600 Rh7DG080100
rosa_wichuraiana Rw7G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 135
AspA2I CCTAGG 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 224
AvrII CCTAGG 1 cut(s) 194
BccI CCATC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 2 cut(s) 9, 195
BlnI CCTAGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmsI GCATC 2 cut(s) 58, 148
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 93
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 1 cut(s) 200
CviJI RGCY 2 cut(s) 181, 214
CviKI_1 RGCY 2 cut(s) 181, 214
DdeI CTNAG 1 cut(s) 80
DraI TTTAAA 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 1 cut(s) 203
FaiI YATR 3 cut(s) 47, 174, 201
FatI CATG 1 cut(s) 199
FspBI CTAG 2 cut(s) 9, 195
Hin1II CATG 1 cut(s) 203
HinfI GANTC 2 cut(s) 5, 78
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 94, 169
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 2 cut(s) 94, 169
HpyCH4V TGCA 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 1 cut(s) 203
LpnPI CCDG 4 cut(s) 45, 67, 158, 228
LweI GCATC 2 cut(s) 58, 148
MaeI CTAG 2 cut(s) 9, 195
MboII GAAGA 2 cut(s) 75, 145
MluCI AATT 1 cut(s) 153
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 1 cut(s) 109
MseI TTAA 1 cut(s) 15
NlaIII CATG 1 cut(s) 203
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 1 cut(s) 221
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 72
SetI ASST 2 cut(s) 120, 147
SfaNI GCATC 2 cut(s) 58, 148
SgeI CNNG 7 cut(s) 21, 72, 94, 157, 207, 212, 227
SinI GGWCC 1 cut(s) 224
Sse9I AATT 1 cut(s) 153
SspMI CTAG 2 cut(s) 9, 195
StyI CCWWGG 1 cut(s) 194
TasI AATT 1 cut(s) 153
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 146, 189, 216
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 224
XmaJI CCTAGG 1 cut(s) 194
XspI CTAG 2 cut(s) 9, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.