MD06G1112300.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
25085713 .. 25086842
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1112300.v1.1.491

Sequence Viewer

Length: 231 bp
ATGGATCGTAGTATCAAAACCTTTGTTGTCATTCTCTTACTCCTTTTCGACATTTCTTCAGGCAGCAGAGTCAAAGGCTTCAAGCATGGTGTAAGTCCTGCAAACCCTTCGTCAAGCAAGGTTTATGTTGAGATGGAGATGAGAGAGCTGGTGGCAGTGAATGCAATGCTGGACTATGAAAAGCCAATACCAAATCCCAGGCATGAAAAGAGGCCAGGTGGTGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.46

Weight (kDa)

9.52

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017664)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11530
malus_domestica MD06G1112300.v1.1 MD14G1133800.v1.1
prunus_persica Prupe.5G125600_v2.0.a1
pyrus_communis pycom06g10530
rosa_roxburghii Rroxscaffold_3G00268300
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068500 Rh7BG084200 Rh7CG079600 Rh7DG080100
rosa_wichuraiana Rw7G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 42
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 2 cut(s) 197, 214
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 63
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 2 cut(s) 199, 216
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 2 cut(s) 199, 216
BmrFI CCNGG 2 cut(s) 199, 216
BsaJI CCNNGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 199, 216
BseDI CCNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 75
BshFI GGCC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 214
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 2 cut(s) 199, 216
BstAPI GCANNNNNTGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 199, 216
BstSCI CCNGG 2 cut(s) 197, 214
BstV1I GCAGC 1 cut(s) 75
BsuRI GGCC 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
CviAII CATG 2 cut(s) 86, 203
CviJI RGCY 4 cut(s) 78, 148, 184, 214
CviKI_1 RGCY 4 cut(s) 78, 148, 184, 214
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 197, 214
FaeI CATG 2 cut(s) 89, 206
FaiI YATR 4 cut(s) 87, 126, 177, 204
FatI CATG 2 cut(s) 85, 202
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 2 cut(s) 89, 206
HinfI GANTC 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 101, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
Hsp92II CATG 2 cut(s) 89, 206
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 7 cut(s) 45, 111, 134, 155, 184, 201, 211
Lsp1109I GCAGC 1 cut(s) 75
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 48
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 1 cut(s) 204
MspR9I CCNGG 2 cut(s) 199, 216
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 2 cut(s) 199, 216
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 89, 206
PctI GAATGC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 197, 214
PspGI CCWGG 2 cut(s) 197, 214
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 2 cut(s) 199, 216
SetI ASST 4 cut(s) 23, 123, 150, 220
Sse9I AATT 1 cut(s) 226
StyD4I CCNGG 2 cut(s) 197, 214
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 226
TscAI CASTG 1 cut(s) 162
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 192, 219
TspRI CASTG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.