MD14G1133800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
21209560 .. 21210148
589 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1133800.v1.1.491

Sequence Viewer

Length: 231 bp
ATGATTGTATTACATGTGTGTGTGTATATTTATTTATTTAATTGCTTAATTCATGCAGGCAGCCGAGTCAAAGGCTTCAGGCATGGTATAAGTCCTGCAAACCCTTCGTCTAGCAAGGTAAATGGTGAGATGGAGATGAGAGAGCTGGTGGCAGTCGATGCAATGTTGGACTATGAGAAGCCAATGCCAAATCCCAGGCATGACAAAGGGAAGTCAGGTGGTGGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.37

Weight (kDa)

8.69

Isoelectric Point (pI)

22.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017664)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11530
malus_domestica MD06G1112300.v1.1 MD14G1133800.v1.1
prunus_persica Prupe.5G125600_v2.0.a1
pyrus_communis pycom06g10530
rosa_roxburghii Rroxscaffold_3G00268300
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068500 Rh7BG084200 Rh7CG079600 Rh7DG080100
rosa_wichuraiana Rw7G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 61
AflIII ACRYGT 1 cut(s) 13
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 60
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AsuHPI GGTGA 1 cut(s) 137
BbvI GCAGC 1 cut(s) 72
BccI CCATC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 1 cut(s) 196
BfaI CTAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 58
CviAII CATG 4 cut(s) 14, 53, 83, 200
CviJI RGCY 4 cut(s) 63, 75, 145, 181
CviKI_1 RGCY 4 cut(s) 63, 75, 145, 181
Eco57I CTGAAG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 17, 56, 86, 203
FaiI YATR 7 cut(s) 15, 27, 54, 84, 89, 174, 201
FatI CATG 4 cut(s) 13, 52, 82, 199
Fnu4HI GCNGC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 1 cut(s) 111
GluI GCNGC 1 cut(s) 61
Hin1II CATG 4 cut(s) 17, 56, 86, 203
HinfI GANTC 1 cut(s) 66
HphI GGTGA 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 56, 98, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 4 cut(s) 17, 56, 86, 203
LpnPI CCDG 7 cut(s) 42, 64, 108, 131, 181, 201, 208
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 111
MluCI AATT 3 cut(s) 40, 48, 226
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 147
MseI TTAA 2 cut(s) 39, 47
MslI CAYNNNNRTG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 158
NlaIII CATG 4 cut(s) 17, 56, 86, 203
NmeAIII GCCGAG 1 cut(s) 89
NspI RCATGY 1 cut(s) 17
PciI ACATGT 1 cut(s) 13
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PscI ACATGT 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 39, 47
SatI GCNGC 1 cut(s) 61
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 196
SetI ASST 3 cut(s) 120, 147, 220
SfaNI GCATC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 18
Sse9I AATT 3 cut(s) 40, 48, 226
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 194
TaqI TCGA 1 cut(s) 156
TasI AATT 3 cut(s) 40, 48, 226
Tru1I TTAA 2 cut(s) 39, 47
Tru9I TTAA 2 cut(s) 39, 47
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 41
XceI RCATGY 1 cut(s) 17
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.