Rh7CG079600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
5756128 .. 5758843
2716 bp
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UTR
Exon/CDS
Intron
Rh7CG079600.1

Sequence Viewer

Length: 195 bp
ATGGGTTCTAGTTTTAAAACCATTGCTGTCATTCTCTTACTCTTTATAGGCATTTGTGCAGGAAGAGATGCCAAAGGCTTCAGGAATGTTGTAAACCCTACAAACCCATCAACAGAGGTAATTCATGAAAACAATGTCTATGTAGTAAGCATGTTGAAAAGTTACATGTCTATGTCTATGAACTTGATGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.09

Weight (kDa)

9.03

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017664)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11530
malus_domestica MD06G1112300.v1.1 MD14G1133800.v1.1
prunus_persica Prupe.5G125600_v2.0.a1
pyrus_communis pycom06g10530
rosa_roxburghii Rroxscaffold_3G00268300
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068500 Rh7BG084200 Rh7CG079600 Rh7DG080100
rosa_wichuraiana Rw7G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 1 cut(s) 157
BccI CCATC 1 cut(s) 115
BfaI CTAG 1 cut(s) 9
BmsI GCATC 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 78
BspHI TCATGA 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 58
BstNSI RCATGY 2 cut(s) 154, 169
CciI TCATGA 1 cut(s) 124
CviAII CATG 3 cut(s) 125, 151, 166
CviJI RGCY 1 cut(s) 78
CviKI_1 RGCY 1 cut(s) 78
DraI TTTAAA 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 64
FaeI CATG 3 cut(s) 128, 154, 169
FaiI YATR 7 cut(s) 47, 126, 141, 152, 167, 173, 179
FatI CATG 3 cut(s) 124, 150, 165
FspBI CTAG 1 cut(s) 9
Hin1II CATG 3 cut(s) 128, 154, 169
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 82, 125
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 59
Hsp92II CATG 3 cut(s) 128, 154, 169
LpnPI CCDG 2 cut(s) 45, 67
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 161
MboII GAAGA 1 cut(s) 75
MluCI AATT 1 cut(s) 120
MnlI CCTC 1 cut(s) 109
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 170
NlaIII CATG 3 cut(s) 128, 154, 169
NspI RCATGY 2 cut(s) 154, 169
PagI TCATGA 1 cut(s) 124
PciI ACATGT 1 cut(s) 165
PscI ACATGT 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 15
SetI ASST 1 cut(s) 120
SfaNI GCATC 1 cut(s) 58
SgeI CNNG 6 cut(s) 21, 72, 94, 137, 163, 178
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 1 cut(s) 120
SspMI CTAG 1 cut(s) 9
TasI AATT 1 cut(s) 120
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 113, 141, 194
XceI RCATGY 2 cut(s) 154, 169
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.