pycom06g10530

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
15827513 .. 15828347
835 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10530.2

Sequence Viewer

Length: 330 bp
ATGGTTGGGAAAGAAATGGATCACCACTATGGAGTAAGTTGCAGTTGCACCATGAAAATAGTGATGAATCGATCGTGCCATTCTGACATCGCATTCAGCATGGATCGTAGTATCAAAACCTTTGCTGTCATTCTCTTACTCCTTTTCGACATTTCTTCAGGCAGCAGAGTCAAAGGCTTCAAGCATGGTGTAAGTCCTACAAACCCTCCGTCAAGCAAGGTTTATGTTGAGATGGAGATGAGAGAGCTGGTGGCAGTGAATGCAATGCTGGACTATGAAAAGCCAATACCAAATCCCAGGCATGAAAAGAGGCCAGGTGGTGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.16

Weight (kDa)

8.86

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017664)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11530
malus_domestica MD06G1112300.v1.1 MD14G1133800.v1.1
prunus_persica Prupe.5G125600_v2.0.a1
pyrus_communis pycom06g10530
rosa_roxburghii Rroxscaffold_3G00268300
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068500 Rh7BG084200 Rh7CG079600 Rh7DG080100
rosa_wichuraiana Rw7G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 27, 111
AcuI CTGAAG 1 cut(s) 141
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 2 cut(s) 296, 313
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
AlwI GGATC 2 cut(s) 27, 111
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 162
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AsuHPI GGTGA 1 cut(s) 14
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 2 cut(s) 298, 315
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 2 cut(s) 298, 315
BmrFI CCNGG 2 cut(s) 298, 315
Bsa29I ATCGAT 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 298, 315
BseCI ATCGAT 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 313
BshVI ATCGAT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 74
BsmI GAATGC 2 cut(s) 92, 265
BsnI GGCC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 19, 71, 103
BspANI GGCC 1 cut(s) 313
BspDI ATCGAT 1 cut(s) 70
BspPI GGATC 2 cut(s) 27, 111
BsrDI GCAATG 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 3 cut(s) 19, 71, 103
Bst2UI CCWGG 2 cut(s) 298, 315
BstAPI GCANNNNNTGC 1 cut(s) 260
BstKTI GATC 3 cut(s) 22, 74, 106
BstMBI GATC 3 cut(s) 19, 71, 103
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 2 cut(s) 298, 315
BstSCI CCNGG 2 cut(s) 296, 313
BstV1I GCAGC 1 cut(s) 174
Bsu15I ATCGAT 1 cut(s) 70
BsuRI GGCC 1 cut(s) 313
BsuTUI ATCGAT 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
ClaI ATCGAT 1 cut(s) 70
CviAII CATG 4 cut(s) 52, 100, 185, 302
CviJI RGCY 4 cut(s) 177, 247, 283, 313
CviKI_1 RGCY 4 cut(s) 177, 247, 283, 313
DpnI GATC 3 cut(s) 21, 73, 105
DpnII GATC 3 cut(s) 19, 71, 103
Eco57I CTGAAG 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 296, 313
FaeI CATG 4 cut(s) 55, 103, 188, 305
FaiI YATR 7 cut(s) 30, 53, 101, 186, 225, 276, 303
FatI CATG 4 cut(s) 51, 99, 184, 301
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 313
Hin1II CATG 4 cut(s) 55, 103, 188, 305
HinfI GANTC 2 cut(s) 67, 168
HphI GGTGA 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 85
HpyCH4V TGCA 3 cut(s) 42, 48, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
Hsp92II CATG 4 cut(s) 55, 103, 188, 305
Kzo9I GATC 3 cut(s) 19, 71, 103
LpnPI CCDG 6 cut(s) 144, 233, 254, 283, 300, 310
Lsp1109I GCAGC 1 cut(s) 174
MalI GATC 3 cut(s) 21, 73, 105
MboI GATC 3 cut(s) 19, 71, 103
MboII GAAGA 1 cut(s) 147
MluCI AATT 1 cut(s) 325
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 2 cut(s) 216, 303
MslI CAYNNNNRTG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 298, 315
Mva1269I GAATGC 2 cut(s) 92, 265
MvaI CCWGG 2 cut(s) 298, 315
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 3 cut(s) 19, 71, 103
NlaIII CATG 4 cut(s) 55, 103, 188, 305
PctI GAATGC 2 cut(s) 92, 265
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 164
Ple19I CGATCG 1 cut(s) 74
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 296, 313
PspGI CCWGG 2 cut(s) 296, 313
PvuI CGATCG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 27
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 3 cut(s) 19, 71, 103
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 298, 315
SetI ASST 4 cut(s) 122, 222, 249, 319
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 296, 313
TaqI TCGA 2 cut(s) 70, 147
TasI AATT 1 cut(s) 325
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 1 cut(s) 261
TseI GCWGC 1 cut(s) 162
TspDTI ATGAA 4 cut(s) 68, 80, 291, 318
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.