Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0019236

Physical Location & Seq

Genomic Coordinates Forward (+)

6967275 .. 6971085

Gene Structure 3811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTCAGATCTTCGAGCACTTTGTCGTCTGCGGCATCGGGCCGGAGATTCGAACCCTCGACGGCGGCAGAGGATTCCACGGCTTCGCCGAAATGTACCTCCCGTCTTTGCTCGACCAGTTCCCTCCCGCCAACCACACTCTCTATCCTCCTCCGCGGCCTCAGCTCCCCACCGGTCTGTGGCTGCGTCTTCTAAAACTGGGACCTACTGATGATCCTCTTTCTTCATTTGGGTATGGAACAATTCTTGGAAAAGACATGTATTGTTCCCATTTTGATACTGCGATGCGGTTGCTGAACAGGCAACTTGGGATTAAAAACTTCACCCCTTTAAGGCAATTGTTCGTCGATCTTCACTCTGGAAGCCACAGCTATCTACGGGCATTTTCGTCTGCTCCGGTGATATCACTAGCAGTTGAGCGTGGGTGGAATGAATCTGCCACACCACTTGTGAGAAACCCACCAGCACTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

159

Amino Acids

17.58

Weight (kDa)

7.8

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COPI_C	PF06957	87 - 157	1.5e-19	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12390 FvH4_5g12410
malus_domestica	MD06G1214100.v1.1
rosa_multiflora	Rmu_ssc0000482.1_g000018
rosa_roxburghii	Rroxscaffold_3G00232330
rosa_rugosa	Rorug06G0033100 Rorug07G0110400
rosa_samantha	Rh5DG016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	157
AciI	CCGC	6 cut(s)	33, 66, 129, 155, 157, 289
AclWI	GGATC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	180, 333
AflIII	ACRYGT	1 cut(s)	258
AgeI	ACCGGT	1 cut(s)	173
AluBI	AGCT	2 cut(s)	166, 372
AluI	AGCT	2 cut(s)	166, 372
Alw21I	GWGCWC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	2 cut(s)	41, 158
ApeKI	GCWGC	1 cut(s)	184
AsiGI	ACCGGT	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	41, 203
AsuHPI	GGTGA	2 cut(s)	316, 412
AsuII	TTCGAA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	171
BceAI	ACGGC	2 cut(s)	79, 97
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BfaI	CTAG	1 cut(s)	410
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	4 cut(s)	34, 67, 158, 185
BlsI	GCNGC	4 cut(s)	35, 68, 159, 186
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	41, 203
BmiI	GGNNCC	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	45, 276
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	79, 155
BsaWI	WCCGGW	2 cut(s)	173, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 333
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	118, 204
BseDI	CCNNGG	2 cut(s)	79, 155
BseLI	CCNNNNNNNGG	2 cut(s)	180, 333
BseMII	CTCAG	2 cut(s)	20, 176
BseNI	ACTGG	2 cut(s)	118, 204
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	43, 160
BshTI	ACCGGT	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	3 cut(s)	44, 174, 398
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	180, 333
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	43, 160
Bsp119I	TTCGAA	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	9, 214, 349
BspACI	CCGC	6 cut(s)	33, 66, 129, 155, 157, 289
BspANI	GGCC	2 cut(s)	43, 160
BspCNI	CTCAG	2 cut(s)	19, 175
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	118, 204
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	79, 155
BssMI	GATC	3 cut(s)	9, 214, 349
Bst4CI	ACNGT	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	6, 162
BstDSI	CCRYGG	2 cut(s)	79, 155
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	3 cut(s)	12, 217, 352
BstMBI	GATC	3 cut(s)	9, 214, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 301
BstNSI	RCATGY	1 cut(s)	262
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	43, 160
BtgI	CCRYGG	2 cut(s)	79, 155
BtgZI	GCGATG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	41, 203
Cfr42I	CCGCGG	1 cut(s)	158
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	97
CspAI	ACCGGT	1 cut(s)	173
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	8 cut(s)	5, 43, 84, 160, 166, 184, 366, 372
CviKI_1	RGCY	8 cut(s)	5, 43, 84, 160, 166, 184, 366, 372
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	6, 162
DpnI	GATC	3 cut(s)	11, 216, 351
DpnII	GATC	3 cut(s)	9, 214, 349
Eco32I	GATATC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	405
FaeI	CATG	1 cut(s)	262
FaiI	YATR	2 cut(s)	237, 260
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	4 cut(s)	34, 67, 158, 185
Fsp4HI	GCNGC	4 cut(s)	34, 67, 158, 185
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	4 cut(s)	34, 67, 158, 185
HaeIII	GGCC	2 cut(s)	43, 160
HapII	CCGG	3 cut(s)	44, 174, 398
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	262
HinfI	GANTC	3 cut(s)	49, 75, 434
HpaII	CCGG	3 cut(s)	44, 174, 398
HphI	GGTGA	2 cut(s)	316, 412
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	360
Hpy99I	CGWCG	2 cut(s)	65, 350
HpyCH4III	ACNGT	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 301
HpyF3I	CTNAG	2 cut(s)	6, 162
Hsp92II	CATG	1 cut(s)	262
KspI	CCGCGG	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	9, 214, 349
LmnI	GCTCC	2 cut(s)	171, 400
LpnPI	CCDG	7 cut(s)	57, 131, 185, 187, 286, 345, 411
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	2 cut(s)	45, 276
MaeI	CTAG	1 cut(s)	410
MalI	GATC	3 cut(s)	11, 216, 351
MboI	GATC	3 cut(s)	9, 214, 349
MboII	GAAGA	4 cut(s)	4, 182, 216, 344
MfeI	CAATTG	1 cut(s)	338
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	243, 338
MnlI	CCTC	8 cut(s)	65, 68, 110, 135, 159, 162, 171, 228
MseI	TTAA	2 cut(s)	315, 332
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	3 cut(s)	44, 174, 398
MunI	CAATTG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	163, 301
NdeII	GATC	3 cut(s)	9, 214, 349
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	49, 75, 434
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	35, 68, 159, 186
PpuMI	RGGWCCY	1 cut(s)	203
PscI	ACATGT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	41, 203
PspPPI	RGGWCCY	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacII	CCGCGG	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	315, 332
SatI	GCNGC	4 cut(s)	34, 67, 158, 185
Sau3AI	GATC	3 cut(s)	9, 214, 349
Sau96I	GGNCC	2 cut(s)	41, 203
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	4 cut(s)	102, 168, 208, 374
SfaNI	GCATC	2 cut(s)	45, 276
Sfr303I	CCGCGG	1 cut(s)	158
SfuI	TTCGAA	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	203
Sse9I	AATT	2 cut(s)	243, 338
SsiI	CCGC	6 cut(s)	33, 66, 129, 155, 157, 289
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	471
TaqI	TCGA	5 cut(s)	15, 52, 60, 114, 348
TasI	AATT	2 cut(s)	243, 338
TauI	GCSGC	3 cut(s)	36, 69, 160
TfiI	GAWTC	3 cut(s)	49, 75, 434
Tru1I	TTAA	2 cut(s)	315, 332
Tru9I	TTAA	2 cut(s)	315, 332
TscAI	CASTG	1 cut(s)	474
TseI	GCWGC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	216, 447
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	203
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.