Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0019236

Physical Location & Seq

Genomic Coordinates Forward (+)

6981843 .. 6983537

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTCAGATCTTCGAGCACTTCGTCGTCTGCGGCATCGGGCCGGAGATTCGAACCCTCGACGGCGGCAGAGGATTCCACGGCTTCGCCGAAATGTACCTCCCGTCTTTGCTCGACCAGTTCCCTCCCGCCAACCACACTCTCTATCCTCCTCCACCGCCTCAGCTCCCCACCGTAAGTACCGAAACGACGCCGGTTTTGCTTTGCTCTCTCTCGCCGGAATCGGCGAATTCTAATTTCGGTTGTGGTTTTCTACAGTGTGTGCTGCCAGCTGGCGTTTCGTCGTTTCCGCGGAGCTATCCCATTGTTCTTACTGTTACATTCATCTTGGCTTGGAAAGGAGCCAAAAGAGTTGGACATCTGAACGCACCTTCTGTCCTTACTGGTAAAGACCCCAAATCAGATCCATTGGAGCGGGCTGCTGAAAGGGAATGTATGGTTTTGAACATCAAAGTTAAGCTGCAGGGTCTGTGGCTGCGTCTTCTAAAACTGGGACCTACTGATAATCCTCTTTCTTCATTTGAGTATGGAACAATTCTTGCTTTAATTGAATCGGATGCAGAGGGGATTGGTGGCAGTGGGTTTGTTGAATGTATAAGGGAGCACATAAATTCGGGATGGCACTGTCAGTTAACTGAAGAACAATTTATTGCTGTGAAGGAACTGGTACAAATTCTAAGTCAATATTCAAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

233

Amino Acids

25.36

Weight (kDa)

5.54

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12390 FvH4_5g12410
malus_domestica	MD06G1214100.v1.1
rosa_multiflora	Rmu_ssc0000482.1_g000018
rosa_roxburghii	Rroxscaffold_3G00232330
rosa_rugosa	Rorug06G0033100 Rorug07G0110400
rosa_samantha	Rh5DG016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	415
AccII	CGCG	1 cut(s)	292
AciI	CCGC	7 cut(s)	33, 66, 129, 158, 290, 292, 415
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	3 cut(s)	229, 610, 672
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	3 cut(s)	98, 181, 669
AgsI	TTSAA	4 cut(s)	445, 551, 590, 690
AluBI	AGCT	4 cut(s)	166, 272, 297, 460
AluI	AGCT	4 cut(s)	166, 272, 297, 460
Alw21I	GWGCWC	2 cut(s)	21, 606
AlwI	GGATC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	469
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	4 cut(s)	265, 419, 460, 475
ApoI	RAATTY	3 cut(s)	229, 610, 672
ArsI	GACNNNNNNTTYG	4 cut(s)	181, 213, 664, 696
AspS9I	GGNCC	2 cut(s)	41, 494
AsuII	TTCGAA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	2 cut(s)	21, 606
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	252, 406, 447, 462
BccI	CCATC	1 cut(s)	612
BceAI	ACGGC	2 cut(s)	79, 97
BfmI	CTRYAG	2 cut(s)	254, 461
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	6 cut(s)	34, 67, 266, 420, 461, 476
BlsI	GCNGC	6 cut(s)	35, 68, 267, 421, 462, 477
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	41, 494
BmiI	GGNNCC	2 cut(s)	343, 495
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	45, 547
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	79, 290
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	4 cut(s)	118, 388, 495, 669
BseDI	CCNNGG	2 cut(s)	79, 290
BseGI	GGATG	2 cut(s)	562, 623
BseMII	CTCAG	2 cut(s)	20, 176
BseNI	ACTGG	4 cut(s)	118, 388, 495, 669
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	4 cut(s)	252, 406, 447, 462
Bsh1236I	CGCG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	21, 606
BsiSI	CCGG	3 cut(s)	44, 194, 218
BslFI	GGGAC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	21, 606
Bsp143I	GATC	2 cut(s)	9, 403
BspACI	CCGC	7 cut(s)	33, 66, 129, 158, 290, 292, 415
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	19, 175
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	343, 495
BspMAI	CTGCAG	1 cut(s)	465
BspPI	GGATC	1 cut(s)	398
BspT104I	TTCGAA	1 cut(s)	52
BsrBI	CCGCTC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	4 cut(s)	118, 388, 495, 669
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	79, 290
BssMI	GATC	2 cut(s)	9, 403
BssNI	GRCGYC	1 cut(s)	191
Bst4CI	ACNGT	4 cut(s)	175, 258, 316, 626
BstACI	GRCGYC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	270, 274, 417
BstDEI	CTNAG	3 cut(s)	6, 162, 677
BstDSI	CCRYGG	2 cut(s)	79, 290
BstF5I	GGATG	2 cut(s)	562, 623
BstFNI	CGCG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	12, 406
BstMBI	GATC	2 cut(s)	9, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstSFI	CTRYAG	2 cut(s)	254, 461
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	4 cut(s)	252, 406, 447, 462
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	2 cut(s)	9, 403
BstYI	RGATCY	2 cut(s)	9, 403
BsuRI	GGCC	1 cut(s)	43
BtgI	CCRYGG	2 cut(s)	79, 290
BtsCI	GGATG	2 cut(s)	562, 623
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	3 cut(s)	263, 583, 622
Cac8I	GCNNGC	3 cut(s)	270, 274, 417
CaiI	CAGNNNCTG	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	41, 494
Cfr42I	CCGCGG	1 cut(s)	293
CseI	GACGC	2 cut(s)	199, 467
Csp6I	GTAC	3 cut(s)	97, 180, 668
CviQI	GTAC	3 cut(s)	97, 180, 668
DdeI	CTNAG	3 cut(s)	6, 162, 677
DpnI	GATC	2 cut(s)	11, 405
DpnII	GATC	2 cut(s)	9, 403
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	657
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	229
FaiI	YATR	4 cut(s)	437, 528, 596, 608
FaqI	GGGAC	1 cut(s)	507
FauI	CCCGC	2 cut(s)	136, 408
Fnu4HI	GCNGC	6 cut(s)	34, 67, 266, 420, 461, 476
FokI	GGATG	2 cut(s)	569, 630
Fsp4HI	GCNGC	6 cut(s)	34, 67, 266, 420, 461, 476
GluI	GCNGC	6 cut(s)	34, 67, 266, 420, 461, 476
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	3 cut(s)	44, 194, 218
HgaI	GACGC	2 cut(s)	199, 467
Hin1I	GRCGYC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HinfI	GANTC	4 cut(s)	49, 75, 221, 551
HpaI	GTTAAC	1 cut(s)	633
HpaII	CCGG	3 cut(s)	44, 194, 218
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	4 cut(s)	9, 363, 403, 556
Hpy188III	TCNNGA	1 cut(s)	615
Hpy8I	GTNNAC	1 cut(s)	633
Hpy99I	CGWCG	4 cut(s)	29, 65, 193, 286
HpyAV	CCTTC	2 cut(s)	381, 652
HpyCH4III	ACNGT	4 cut(s)	175, 258, 316, 626
HpyCH4V	TGCA	2 cut(s)	463, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	3 cut(s)	6, 162, 677
Hsp92I	GRCGYC	1 cut(s)	191
KspAI	GTTAAC	1 cut(s)	633
KspI	CCGCGG	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	9, 403
LmnI	GCTCC	5 cut(s)	171, 294, 341, 412, 601
Lsp1109I	GCAGC	4 cut(s)	252, 406, 447, 462
LweI	GCATC	2 cut(s)	45, 547
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	11, 405
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	2 cut(s)	9, 403
MboII	GAAGA	4 cut(s)	4, 473, 507, 650
MflI	RGATCY	2 cut(s)	9, 403
MhlI	GDGCHC	2 cut(s)	21, 606
MluCI	AATT	7 cut(s)	229, 235, 534, 546, 610, 644, 672
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	9 cut(s)	65, 68, 110, 135, 159, 162, 171, 519, 556
MseI	TTAA	3 cut(s)	456, 545, 632
MspA1I	CMGCKG	2 cut(s)	272, 292
MspI	CCGG	3 cut(s)	44, 194, 218
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	2 cut(s)	9, 403
NlaIV	GGNNCC	2 cut(s)	343, 495
NspV	TTCGAA	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 87
PfeI	GAWTC	4 cut(s)	49, 75, 221, 551
PkrI	GCNGC	6 cut(s)	35, 68, 267, 421, 462, 477
PpuMI	RGGWCCY	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	343, 495
PspPI	GGNCC	2 cut(s)	41, 494
PspPPI	RGGWCCY	1 cut(s)	494
PstI	CTGCAG	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	9, 403
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	3 cut(s)	98, 181, 669
RsaNI	GTAC	3 cut(s)	97, 180, 668
SacII	CCGCGG	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	456, 545, 632
SatI	GCNGC	6 cut(s)	34, 67, 266, 420, 461, 476
Sau3AI	GATC	2 cut(s)	9, 403
Sau96I	GGNCC	2 cut(s)	41, 494
SduI	GDGCHC	2 cut(s)	21, 606
SetI	ASST	7 cut(s)	102, 168, 274, 299, 373, 462, 499
SfaNI	GCATC	2 cut(s)	45, 547
SfcI	CTRYAG	2 cut(s)	254, 461
Sfr303I	CCGCGG	1 cut(s)	293
SfuI	TTCGAA	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	494
Sse9I	AATT	7 cut(s)	229, 235, 534, 546, 610, 644, 672
SsiI	CCGC	7 cut(s)	33, 66, 129, 158, 290, 292, 415
SspI	AATATT	1 cut(s)	686
TaaI	ACNGT	4 cut(s)	175, 258, 316, 626
TaqI	TCGA	4 cut(s)	15, 52, 60, 114
TasI	AATT	7 cut(s)	229, 235, 534, 546, 610, 644, 672
TauI	GCSGC	2 cut(s)	36, 69
TfiI	GAWTC	4 cut(s)	49, 75, 221, 551
Tru1I	TTAA	3 cut(s)	456, 545, 632
Tru9I	TTAA	3 cut(s)	456, 545, 632
TscAI	CASTG	3 cut(s)	263, 583, 629
TseI	GCWGC	4 cut(s)	265, 419, 460, 475
TspDTI	ATGAA	2 cut(s)	313, 507
TspRI	CASTG	3 cut(s)	263, 583, 629
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	3 cut(s)	229, 610, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.