Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000634

Physical Location & Seq

Genomic Coordinates Forward (+)

4057250 .. 4059922

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0033100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGATCTTGAGACAGAGAATAGAATAGCTGCAATTCTTATGAGAGAAGCAGCAGAATTGCGGCGCCAAGCTGAGAAGGAAGGTGTGCATGCTTATCTTCAACAACCTAAAGCAAGATTTAGGCCAAATTCACGGTTCCTCAGTGCTACTGTTCGTGGTGTTGAACAAGCAAATAAAGCTGTGGAAGTGAATGAAATGTGGCGAATCCGGCAGAAAGAGCTCGAATTGGATGAAAGGCTTAAAGGCAAGATGAAGGATGAGAGCAGAAATGACAGGAATCCTGGAGATGGCAACACTCCGAGAAGCCCTAGCAAGAGGCACGCTTCCATGGAGGATAATGTTAGTGCTACTTGTTCATCAAGCCAAAGAGTACATGAGAGATGCCATTCAAGGGAAGAGAATGGATTAAGAGACGAAGAACTTGAAGAATTTTTACATTCAAGGGTCAAGCGTGGCAGAGGAGCTGTTGGGTCAAGGATGGATGAAACAGGTCCATATCTTCCACGTTCGGACTCCGAGGAACAGATAGCTGGTCCCAGTGTACAAGAACGTCGTGTTTATGGACCAGAGAAGCCTTCACAGAAGTTATGTGACTCTTCTGAAGAGGAGCTTCCCAACAGGAAGAGATCAAAAAAGGTTTCTTCTGGAAGCTCAAAGAAGCACAAATCCAAGGATAAGTCTAAAGAGCGGAAAAAGAAGAGGAAAGAAGAGAAAAGAAGTAAATATTATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

244

Amino Acids

28.25

Weight (kDa)

9.64

Isoelectric Point (pI)

70.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica	MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica	Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis	pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis	RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata	RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora	Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa	Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha	Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana	Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AccBSI	CCGCTC	1 cut(s)	688
AciI	CCGC	2 cut(s)	61, 688
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	127, 428
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	2 cut(s)	372, 543
AfiI	CCNNNNNNNGG	2 cut(s)	287, 391
AgsI	TTSAA	5 cut(s)	101, 164, 390, 425, 441
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	8 cut(s)	29, 71, 179, 220, 464, 530, 610, 651
AluI	AGCT	8 cut(s)	29, 71, 179, 220, 464, 530, 610, 651
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	5, 405
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	29, 50
ApoI	RAATTY	2 cut(s)	127, 428
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	3 cut(s)	491, 533, 563
AvaII	GGWCC	3 cut(s)	491, 533, 563
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	417, 449
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	16, 62
BccI	CCATC	2 cut(s)	281, 472
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	5, 405
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	67
BisI	GCNGC	3 cut(s)	30, 51, 62
BlsI	GCNGC	3 cut(s)	31, 52, 63
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	3 cut(s)	491, 533, 563
BmgT120I	GGNCC	3 cut(s)	491, 533, 563
BmiI	GGNNCC	3 cut(s)	65, 137, 535
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	1 cut(s)	371
BmuI	ACTGGG	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	327, 516, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 391
Bse1I	ACTGG	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	327, 516, 669
BseGI	GGATG	4 cut(s)	235, 262, 483, 487
BseLI	CCNNNNNNNGG	2 cut(s)	287, 391
BseMII	CTCAG	2 cut(s)	63, 154
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	2 cut(s)	474, 620
BseXI	GCAGC	2 cut(s)	16, 62
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	2 cut(s)	287, 391
BsmAI	GTCTC	2 cut(s)	5, 405
BsmBI	CGTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	2 cut(s)	4, 626
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	2 cut(s)	61, 688
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	64, 153
BspLI	GGNNCC	3 cut(s)	65, 137, 535
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	688
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	3 cut(s)	327, 516, 669
BssMI	GATC	2 cut(s)	4, 626
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	327, 669
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	135, 151
Bst6I	CTCTTC	6 cut(s)	390, 597, 601, 617, 692, 702
BstACI	GRCGYC	1 cut(s)	64
BstAUI	TGTACA	1 cut(s)	541
BstC8I	GCNNGC	2 cut(s)	90, 321
BstDEI	CTNAG	2 cut(s)	72, 140
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	4 cut(s)	235, 262, 483, 487
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	2 cut(s)	7, 629
BstMAI	GTCTC	2 cut(s)	5, 405
BstMBI	GATC	2 cut(s)	4, 626
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 208, 217
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	16, 62
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	4 cut(s)	235, 262, 483, 487
BtsIMutI	CAGTG	2 cut(s)	148, 544
Cac8I	GCNNGC	2 cut(s)	90, 321
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	3 cut(s)	491, 533, 563
Csp6I	GTAC	2 cut(s)	371, 542
CviAII	CATG	3 cut(s)	89, 328, 374
CviQI	GTAC	2 cut(s)	371, 542
DdeI	CTNAG	2 cut(s)	72, 140
DinI	GGCGCC	1 cut(s)	65
DpnI	GATC	2 cut(s)	6, 628
DpnII	GATC	2 cut(s)	4, 626
Eam1104I	CTCTTC	6 cut(s)	390, 597, 601, 617, 692, 702
EarI	CTCTTC	6 cut(s)	390, 597, 601, 617, 692, 702
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	327, 669
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	3 cut(s)	491, 533, 563
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	327, 669
EcoT38I	GRGCYC	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	65
EheI	GGCGCC	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	327, 669
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	3 cut(s)	92, 331, 377
FaiI	YATR	8 cut(s)	41, 90, 329, 375, 496, 561, 589, 729
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	3 cut(s)	88, 327, 373
Fnu4HI	GCNGC	3 cut(s)	30, 51, 62
FokI	GGATG	4 cut(s)	242, 269, 490, 494
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	30, 51, 62
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	3 cut(s)	30, 51, 62
GsuI	CTGGAG	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	1 cut(s)	208
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	92, 331, 377
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	4 cut(s)	204, 277, 512, 593
HpaII	CCGG	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	4 cut(s)	300, 511, 517, 601
Hpy188III	TCNNGA	2 cut(s)	8, 645
Hpy8I	GTNNAC	1 cut(s)	542
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	4 cut(s)	70, 74, 247, 585
HpyCH4III	ACNGT	2 cut(s)	135, 151
HpyCH4IV	ACGT	2 cut(s)	505, 550
HpyCH4V	TGCA	2 cut(s)	32, 88
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 208, 217
HpyF3I	CTNAG	2 cut(s)	72, 140
HpySE526I	ACGT	2 cut(s)	505, 550
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	3 cut(s)	92, 331, 377
HspAI	GCGC	1 cut(s)	64
KasI	GGCGCC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	4, 626
LmnI	GCTCC	2 cut(s)	461, 607
Lsp1109I	GCAGC	2 cut(s)	16, 62
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	505, 550
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	2 cut(s)	6, 628
MbiI	CCGCTC	1 cut(s)	688
MboI	GATC	2 cut(s)	4, 626
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	5 cut(s)	33, 56, 127, 224, 428
Mly113I	GGCGCC	1 cut(s)	64
MlyI	GAGTC	2 cut(s)	506, 587
MnlI	CCTC	7 cut(s)	149, 309, 325, 452, 511, 598, 693
MseI	TTAA	3 cut(s)	240, 407, 733
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	176, 208, 217
NarI	GGCGCC	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	4, 626
NlaIII	CATG	3 cut(s)	92, 331, 377
NlaIV	GGNNCC	3 cut(s)	65, 137, 535
NmuCI	GTSAC	1 cut(s)	590
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	204, 277
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	31, 52, 63
PleI	GAGTC	2 cut(s)	506, 587
PluTI	GGCGCC	1 cut(s)	67
PpsI	GAGTC	2 cut(s)	506, 587
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	65, 137, 535
PspPI	GGNCC	3 cut(s)	491, 533, 563
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	372, 543
RsaNI	GTAC	2 cut(s)	371, 542
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	240, 407, 733
SatI	GCNGC	3 cut(s)	30, 51, 62
Sau3AI	GATC	2 cut(s)	4, 626
Sau96I	GGNCC	3 cut(s)	491, 533, 563
SchI	GAGTC	2 cut(s)	506, 587
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	371
SfoI	GGCGCC	1 cut(s)	65
SinI	GGWCC	3 cut(s)	491, 533, 563
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	5 cut(s)	33, 56, 127, 224, 428
SsiI	CCGC	2 cut(s)	61, 688
SspDI	GGCGCC	1 cut(s)	63
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	2 cut(s)	327, 669
TaaI	ACNGT	2 cut(s)	135, 151
TaiI	ACGT	2 cut(s)	508, 553
TaqI	TCGA	1 cut(s)	222
TasI	AATT	5 cut(s)	33, 56, 127, 224, 428
TatI	WGTACW	2 cut(s)	370, 541
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	204, 277
Tru1I	TTAA	3 cut(s)	240, 407, 733
Tru9I	TTAA	3 cut(s)	240, 407, 733
TscAI	CASTG	2 cut(s)	148, 544
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	2 cut(s)	29, 50
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	5 cut(s)	207, 246, 266, 345, 498
TspRI	CASTG	2 cut(s)	148, 544
VpaK11BI	GGWCC	3 cut(s)	491, 533, 563
XapI	RAATTY	2 cut(s)	127, 428
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.