Rorug01G0208400

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000634
Physical Location & Seq
Forward (+)
29394464 .. 29395006
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0208400.1

Sequence Viewer

Length: 543 bp
ATGAAGAAAACTTTCTTCTACAACTTCTTCCCGACGAAAGACGAAGAAATCAAGGCAGCAAAAGCCGTTAATGCCAAAAAGCACGTAAGCTGCGATGTAATTGAAATCAGAGAGATTGACTATCAACCACTGTTCAAACCCAACGATCCGTGGCACATCAAAAAGATTGTTGAAGCAGAGGAGATCAAAACTGGGATTCTTCGATTGTCATGGCGTGACACACTCGATCATATCTTTCGATATTGGGATGTTGAAACAGCCAACTTGGTAACAAATAAAGGTAAGAAGATATTTGTTGAAATAGTAGTGGATCTTTCTGATCCCACCAGGCCATTCAAGCCGTATCAAGGTGAGAACATATATTTGCAGAAGATGTCGAAAGATGAGTTCGTTTATAATTTTGGGTTGAAGGATTTGGTCGTTAATAAGCATTTCAGAGAAGGTGATTTGATTGGTTTAACTTGGGATTATCGATATGGTATTTTTCAGACCAAGGTTTTGAGCAGAGGTAAGGCAGCAAGGGATGCAATAGTCTTAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

180

Amino Acids

21.22

Weight (kDa)

8.78

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AclWI GGATC 3 cut(s) 140, 314, 318
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 7 cut(s) 104, 136, 173, 254, 299, 337, 409
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
AlwI GGATC 3 cut(s) 140, 314, 318
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 56, 90, 515
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
Asp700I GAANNNNTTC 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 362, 455
BbvI GCAGC 3 cut(s) 68, 77, 527
BceAI ACGGC 2 cut(s) 50, 325
BciT130I CCWGG 1 cut(s) 328
BisI GCNGC 3 cut(s) 57, 91, 516
BlsI GCNGC 3 cut(s) 58, 92, 517
Bme1390I CCNGG 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 328
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 514
BmuI ACTGGG 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 472
BsaAI YACGTR 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 149, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 328
BseCI ATCGAT 1 cut(s) 472
BseDI CCNNGG 2 cut(s) 149, 492
BseGI GGATG 2 cut(s) 253, 529
BseLI CCNNNNNNNGG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 3 cut(s) 68, 77, 527
BshFI GGCC 1 cut(s) 331
BshVI ATCGAT 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 347
BsnI GGCC 1 cut(s) 331
Bsp143I GATC 5 cut(s) 145, 183, 226, 310, 319
BspANI GGCC 1 cut(s) 331
BspDI ATCGAT 1 cut(s) 472
BspPI GGATC 3 cut(s) 140, 314, 318
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 149, 492
BssMI GATC 5 cut(s) 145, 183, 226, 310, 319
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 524
BstBAI YACGTR 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 535
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 253, 529
BstKTI GATC 5 cut(s) 148, 186, 229, 313, 322
BstMBI GATC 5 cut(s) 145, 183, 226, 310, 319
BstMWI GCNNNNNNNGC 4 cut(s) 62, 71, 337, 524
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BstV1I GCAGC 3 cut(s) 68, 77, 527
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Bsu15I ATCGAT 1 cut(s) 472
BsuRI GGCC 1 cut(s) 331
BsuTUI ATCGAT 1 cut(s) 472
BtgI CCRYGG 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 2 cut(s) 253, 529
BtsIMutI CAGTG 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 472
CviAII CATG 1 cut(s) 210
CviJI RGCY 5 cut(s) 65, 90, 260, 331, 340
CviKI_1 RGCY 5 cut(s) 65, 90, 260, 331, 340
DdeI CTNAG 1 cut(s) 535
DpnI GATC 5 cut(s) 147, 185, 228, 312, 321
DpnII GATC 5 cut(s) 145, 183, 226, 310, 319
Eco130I CCWWGG 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 1 cut(s) 213
FaiI YATR 6 cut(s) 211, 231, 359, 361, 396, 477
FatI CATG 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 57, 91, 516
FokI GGATG 2 cut(s) 260, 536
Fsp4HI GCNGC 3 cut(s) 57, 91, 516
GluI GCNGC 3 cut(s) 57, 91, 516
HaeIII GGCC 1 cut(s) 331
Hin1II CATG 1 cut(s) 213
HinfI GANTC 1 cut(s) 196
HphI GGTGA 2 cut(s) 362, 455
Hpy188I TCNGA 4 cut(s) 110, 319, 437, 489
Hpy188III TCNNGA 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 403, 434
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 367, 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 71, 337, 524
HpyF3I CTNAG 1 cut(s) 535
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 213
Kzo9I GATC 5 cut(s) 145, 183, 226, 310, 319
LpnPI CCDG 3 cut(s) 177, 313, 340
Lsp1109I GCAGC 3 cut(s) 68, 77, 527
LweI GCATC 1 cut(s) 514
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 215, 268
MalI GATC 5 cut(s) 147, 185, 228, 312, 321
MboI GATC 5 cut(s) 145, 183, 226, 310, 319
MboII GAAGA 7 cut(s) 7, 16, 19, 56, 191, 298, 382
MflI RGATCY 1 cut(s) 310
MluCI AATT 2 cut(s) 99, 397
MnlI CCTC 2 cut(s) 172, 500
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 3 cut(s) 69, 423, 458
MspR9I CCNGG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 4 cut(s) 62, 71, 337, 524
NdeII GATC 5 cut(s) 145, 183, 226, 310, 319
NlaIII CATG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 3 cut(s) 58, 92, 517
Ppu21I YACGTR 1 cut(s) 85
PsiI TTATAA 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 310
SaqAI TTAA 3 cut(s) 69, 423, 458
SatI GCNGC 3 cut(s) 57, 91, 516
Sau3AI GATC 5 cut(s) 145, 183, 226, 310, 319
ScrFI CCNGG 1 cut(s) 328
SetI ASST 7 cut(s) 87, 92, 283, 352, 445, 498, 511
SfaNI GCATC 1 cut(s) 514
Sse9I AATT 2 cut(s) 99, 397
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 202, 225, 238, 377, 472
TasI AATT 2 cut(s) 99, 397
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 69, 423, 458
Tru9I TTAA 3 cut(s) 69, 423, 458
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 3 cut(s) 56, 90, 515
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.