RchiOBHm_Chr5g0051001

Wax ester synthase-like Acyl-CoA acyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000634
Physical Location & Seq
Reverse (-)
51891317 .. 51893896
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32852

Sequence Viewer

Length: 234 bp
ATGATTGGACCATTGGAACAAATGAGTATCGCCAATCACCCCATTAAAGGAATTTACTTTATAGTGACCGGTGCACCTCAGTGTCTTGCTATAACAGCGATGAGTTATATGGGAAAGCTAAGGATTGCCTTCGGAGTTGAAAAAGACTTCATAGATACCAACGTATTGCAGGCATGCATGAAAGATGCCTTTCGGGTGATATGTGAAGCTGCGAATGAATTTCCTATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

77

Amino Acids

8.5

Weight (kDa)

6.53

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_C PF06974 1 - 67 2.3e-17 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 51, 218
AfiI CCNNNNNNNGG 1 cut(s) 47
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 79
AluBI AGCT 2 cut(s) 118, 209
AluI AGCT 2 cut(s) 118, 209
Alw21I GWGCWC 1 cut(s) 76
Alw44I GTGCAC 1 cut(s) 72
ApaLI GTGCAC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 51, 218
AsiGI ACCGGT 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 29, 208
AvaII GGWCC 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 76
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 196
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmsI GCATC 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 171, 175
BstDEI CTNAG 2 cut(s) 78, 119
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 171, 175
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 8
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 2 cut(s) 174, 178
CviJI RGCY 2 cut(s) 118, 209
CviKI_1 RGCY 2 cut(s) 118, 209
DdeI CTNAG 2 cut(s) 78, 119
Eco47I GGWCC 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 179
FaeI CATG 2 cut(s) 177, 181
FaiI YATR 8 cut(s) 62, 92, 108, 110, 152, 175, 179, 202
FatI CATG 2 cut(s) 173, 177
Fnu4HI GCNGC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 210
HapII CCGG 1 cut(s) 69
Hin1II CATG 2 cut(s) 177, 181
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 29, 208
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 74, 169, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 78, 119
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 177, 181
LpnPI CCDG 2 cut(s) 82, 155
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 175
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 2 cut(s) 51, 218
MnlI CCTC 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 79
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 177, 181
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 179
NspI RCATGY 1 cut(s) 177
OliI CACNNNNGTG 1 cut(s) 79
PaeI GCATGC 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 8
SduI GDGCHC 1 cut(s) 76
SetI ASST 4 cut(s) 79, 120, 165, 211
SfaNI GCATC 1 cut(s) 175
SgeI CNNG 6 cut(s) 81, 98, 182, 186, 190, 206
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 79
SphI GCATGC 1 cut(s) 177
Sse9I AATT 2 cut(s) 51, 218
TaiI ACGT 1 cut(s) 165
TasI AATT 2 cut(s) 51, 218
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 139, 194, 231
TspRI CASTG 1 cut(s) 86
VneI GTGCAC 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 2 cut(s) 51, 218
XceI RCATGY 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.