Rh6DG140300

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000634
Physical Location & Seq
Forward (+)
20166134 .. 20168030
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG140300.1

Sequence Viewer

Length: 951 bp
ATGGGTGCTCTTCTCTCTTGTTTACAACGAGCTGACAATCCTTCTCTTCCCCTAACCTTCCCGTCAAGAAGGAGGTCGCAGCCATGGAAGAGTGAAAATTTTGTGACTAAAGTTTTTTCTTCTGTCTTCAACACCATATCGGATTTTTTAAATAGCAACTTGGAGGAAGATGATCAAACACCAATCAGATCGGGGAATGATGGAATTGAGTTCAAGCCAATTGCAGTATCAACTATGACGATTTCCCTTGATAGAATCAAACTAATCAAGAGCAGGGTCGGAGTGACGATAAATGACGTTCTTACCGCGATGATCTTCCTTGGCACTCGACTATACATCCAAGAGACAAACAAAAGTTTAAGCAAAGCAAGAGGCACAGCAATTGTATTGCTCAACACAAGGATGATGGGGAATTACACTTCAGTTCAGGAGATGATCAAACCTAATAGCAAGTTGCCATGGGGGAACCATTTGTCACTGTTGCATGTACCAATACCCAAGTTGTTAACGAATGGTGAAGAACAATATTTTTCAGATAATGCACTTGACTTTGTCTGGAAGACACAGAAAATTTTAAGGAGCAAAAGACATTCTTTGGGTATTCATCTCACTGCTGGGTTCTTGGAGATTCTCAACAAATTTGGAGGCCATGAGGCAGCAGCAAAATACATCCGTAACACATTGAAGAAGTCGAGCATGATAATTTCCAATATGATTGGACCGGTGGAACAGATGTCTTTGGCAAATCATCCAGTTAAAGGCTTATACTTTTTGGTCTTTGGTTCACCTGAGGGCCTTGATGTAACAATAGTAAGTTATATGGGAAAGGTGAGGATTGCCTTCAAGATGGAAAAGGGTCTTATTGATCCACCAAAGTTCAAGTCATGCATGGAAAAGTCTTTTGAGATGATACTCGAAGCATCGGAGAAAACTGCTGTGCAGAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

316

Amino Acids

35.43

Weight (kDa)

9.61

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_C PF06974 154 - 304 2.8e-36 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 308
AciI CCGC 1 cut(s) 306
AclWI GGATC 1 cut(s) 860
AcsI RAATTY 3 cut(s) 97, 570, 638
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 489
AfiI CCNNNNNNNGG 1 cut(s) 758
AgeI ACCGGT 1 cut(s) 721
AgsI TTSAA 5 cut(s) 130, 214, 685, 844, 880
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 860
AoxI GGCC 2 cut(s) 646, 793
ApeKI GCWGC 3 cut(s) 79, 656, 659
ApoI RAATTY 3 cut(s) 97, 570, 638
ArsI GACNNNNNNTTYG 2 cut(s) 866, 898
AsiGI ACCGGT 1 cut(s) 721
AspS9I GGNCC 2 cut(s) 719, 793
AsuHPI GGTGA 3 cut(s) 527, 777, 841
AvaII GGWCC 1 cut(s) 719
AxyI CCTNAGG 1 cut(s) 789
BbsI GAAGAC 2 cut(s) 118, 566
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 3 cut(s) 91, 668, 671
BccI CCATC 3 cut(s) 194, 400, 841
BclI TGATCA 2 cut(s) 172, 435
BcoDI GTCTC 1 cut(s) 338
BisI GCNGC 3 cut(s) 80, 657, 660
BlsI GCNGC 3 cut(s) 81, 658, 661
Bme18I GGWCC 1 cut(s) 719
BmgT120I GGNCC 2 cut(s) 719, 793
BmiI GGNNCC 1 cut(s) 467
BmsI GCATC 1 cut(s) 929
BpiI GAAGAC 2 cut(s) 118, 566
BsaJI CCNNGG 3 cut(s) 83, 319, 458
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 1 cut(s) 752
Bse21I CCTNAGG 1 cut(s) 789
BseDI CCNNGG 3 cut(s) 83, 319, 458
BseGI GGATG 4 cut(s) 336, 408, 669, 748
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMII CTCAG 1 cut(s) 780
BseNI ACTGG 1 cut(s) 752
BseXI GCAGC 3 cut(s) 91, 668, 671
BseYI CCCAGC 1 cut(s) 614
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 2 cut(s) 648, 795
BshTI ACCGGT 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 722
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 1 cut(s) 338
BsnI GGCC 2 cut(s) 648, 795
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 5 cut(s) 172, 188, 312, 435, 865
Bsp19I CCATGG 2 cut(s) 83, 458
BspACI CCGC 1 cut(s) 306
BspANI GGCC 2 cut(s) 648, 795
BspCNI CTCAG 1 cut(s) 781
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 467
BspPI GGATC 1 cut(s) 860
BspQI GCTCTTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 1 cut(s) 752
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 3 cut(s) 83, 319, 458
BssMI GATC 5 cut(s) 172, 188, 312, 435, 865
BssT1I CCWWGG 3 cut(s) 83, 319, 458
Bst4CI ACNGT 1 cut(s) 480
Bst6I CTCTTC 3 cut(s) 15, 51, 83
BstDEI CTNAG 1 cut(s) 789
BstDSI CCRYGG 2 cut(s) 83, 458
BstF5I GGATG 4 cut(s) 336, 408, 669, 748
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 5 cut(s) 175, 191, 315, 438, 868
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 5 cut(s) 172, 188, 312, 435, 865
BstNSI RCATGY 1 cut(s) 488
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 3 cut(s) 91, 668, 671
BstV2I GAAGAC 2 cut(s) 118, 566
Bsu36I CCTNAGG 1 cut(s) 789
BsuRI GGCC 2 cut(s) 648, 795
BtgI CCRYGG 2 cut(s) 83, 458
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 4 cut(s) 336, 408, 669, 748
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 476, 609
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 2 cut(s) 719, 793
Csp6I GTAC 1 cut(s) 488
CspAI ACCGGT 1 cut(s) 721
CviAII CATG 7 cut(s) 84, 459, 485, 650, 697, 885, 889
CviJI RGCY 6 cut(s) 32, 82, 217, 648, 762, 795
CviKI_1 RGCY 6 cut(s) 32, 82, 217, 648, 762, 795
CviQI GTAC 1 cut(s) 488
DdeI CTNAG 1 cut(s) 789
DpnI GATC 5 cut(s) 174, 190, 314, 437, 867
DpnII GATC 5 cut(s) 172, 188, 312, 435, 865
DraI TTTAAA 1 cut(s) 150
Eam1104I CTCTTC 3 cut(s) 15, 51, 83
EarI CTCTTC 3 cut(s) 15, 51, 83
Eco130I CCWWGG 3 cut(s) 83, 319, 458
Eco47I GGWCC 1 cut(s) 719
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 789
EcoO109I RGGNCCY 1 cut(s) 793
EcoT14I CCWWGG 3 cut(s) 83, 319, 458
EcoT22I ATGCAT 1 cut(s) 890
ErhI CCWWGG 3 cut(s) 83, 319, 458
FaeI CATG 7 cut(s) 87, 462, 488, 653, 700, 888, 892
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FatI CATG 7 cut(s) 83, 458, 484, 649, 696, 884, 888
FbaI TGATCA 2 cut(s) 172, 435
Fnu4HI GCNGC 3 cut(s) 80, 657, 660
FokI GGATG 4 cut(s) 323, 415, 656, 735
Fsp4HI GCNGC 3 cut(s) 80, 657, 660
GluI GCNGC 3 cut(s) 80, 657, 660
GsaI CCCAGC 1 cut(s) 618
HaeIII GGCC 2 cut(s) 648, 795
HapII CCGG 1 cut(s) 722
Hin1II CATG 7 cut(s) 87, 462, 488, 653, 700, 888, 892
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 2 cut(s) 255, 628
HpaI GTTAAC 1 cut(s) 507
HpaII CCGG 1 cut(s) 722
HphI GGTGA 3 cut(s) 527, 777, 841
Hpy166II GTNNAC 3 cut(s) 23, 507, 785
Hpy188I TCNGA 5 cut(s) 142, 188, 281, 535, 925
Hpy188III TCNNGA 5 cut(s) 66, 268, 428, 556, 844
Hpy8I GTNNAC 3 cut(s) 23, 507, 785
HpyAV CCTTC 4 cut(s) 51, 63, 67, 850
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 5 cut(s) 224, 484, 542, 888, 940
HpyF3I CTNAG 1 cut(s) 789
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 7 cut(s) 87, 462, 488, 653, 700, 888, 892
Ksp22I TGATCA 2 cut(s) 172, 435
KspAI GTTAAC 1 cut(s) 507
Kzo9I GATC 5 cut(s) 172, 188, 312, 435, 865
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 579
LpnPI CCDG 7 cut(s) 259, 413, 541, 600, 735, 765, 801
Lsp1109I GCAGC 3 cut(s) 91, 668, 671
LweI GCATC 1 cut(s) 929
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 5 cut(s) 103, 283, 474, 674, 802
MalI GATC 5 cut(s) 174, 190, 314, 437, 867
MboI GATC 5 cut(s) 172, 188, 312, 435, 865
MboII GAAGA 9 cut(s) 38, 100, 111, 118, 179, 307, 530, 571, 697
MfeI CAATTG 2 cut(s) 219, 381
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 9 cut(s) 97, 204, 219, 381, 412, 570, 638, 702, 946
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 7 cut(s) 66, 157, 365, 638, 646, 784, 825
Mph1103I ATGCAT 1 cut(s) 890
MseI TTAA 6 cut(s) 149, 359, 506, 575, 756, 949
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 1 cut(s) 722
MunI CAATTG 2 cut(s) 219, 381
MvnI CGCG 1 cut(s) 308
NcoI CCATGG 2 cut(s) 83, 458
NdeII GATC 5 cut(s) 172, 188, 312, 435, 865
NlaIII CATG 7 cut(s) 87, 462, 488, 653, 700, 888, 892
NlaIV GGNNCC 1 cut(s) 467
NmuCI GTSAC 3 cut(s) 103, 283, 474
NsiI ATGCAT 1 cut(s) 890
NspI RCATGY 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 255, 628
PflFI GACNNNGTC 1 cut(s) 551
PinAI ACCGGT 1 cut(s) 721
PkrI GCNGC 3 cut(s) 81, 658, 661
PspFI CCCAGC 1 cut(s) 614
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 2 cut(s) 719, 793
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 1 cut(s) 489
RsaNI GTAC 1 cut(s) 488
RseI CAYNNNNRTG 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 6 cut(s) 149, 359, 506, 575, 756, 949
SatI GCNGC 3 cut(s) 80, 657, 660
Sau3AI GATC 5 cut(s) 172, 188, 312, 435, 865
Sau96I GGNCC 2 cut(s) 719, 793
SduI GDGCHC 1 cut(s) 10
SetI ASST 7 cut(s) 34, 59, 77, 300, 445, 790, 831
SfaNI GCATC 1 cut(s) 929
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 9 cut(s) 97, 204, 219, 381, 412, 570, 638, 702, 946
SsiI CCGC 1 cut(s) 306
SspI AATATT 1 cut(s) 527
StyI CCWWGG 3 cut(s) 83, 319, 458
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 1 cut(s) 300
TaqI TCGA 3 cut(s) 328, 692, 915
TasI AATT 9 cut(s) 97, 204, 219, 381, 412, 570, 638, 702, 946
TfiI GAWTC 2 cut(s) 255, 628
Tru1I TTAA 6 cut(s) 149, 359, 506, 575, 756, 949
Tru9I TTAA 6 cut(s) 149, 359, 506, 575, 756, 949
TscAI CASTG 2 cut(s) 483, 616
TseFI GTSAC 3 cut(s) 103, 283, 474
TseI GCWGC 3 cut(s) 79, 656, 659
Tsp45I GTSAC 3 cut(s) 103, 283, 474
TspDTI ATGAA 1 cut(s) 593
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 2 cut(s) 483, 616
Tth111I GACNNNGTC 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 3 cut(s) 97, 570, 638
XceI RCATGY 1 cut(s) 488
Zsp2I ATGCAT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.