RchiOBHm_Chr6g0267491

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000634
Physical Location & Seq
Forward (+)
24273599 .. 24275655
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23992

Sequence Viewer

Length: 1155 bp
ATGGAAAGACTTCCACAACACAAACCTCTCTGGGAAATTCACATTATCAAGTACCCAACTACCAATGCAGCCGGCACTGTAATATTCAAGCTTCACCAAGCGCTTGGTGATGGCTTCTCTCTCATGGTTGCTCTTCTCACTTGTTTACAACGAGCTGACAATCCTTCTCTTCCCCTAACCTTCCCGTCAAGAAGGAGGTCGCAGCCATGGAAGAGTGAAAATTTTGTGACTAAAGTTTTTTCTTCTGTCTTCAACACCATATCGGATTTTTTAAATGGCAACTTGGAGGAAGATGATCAAACACCAATCAGATCGGGGAATGATGGAATTGAGTTCAAGCCAATTGCAGTATCAACTATGACGATTTCCCTTGATAGAATCAAACTAATCAAGAGCAGGCTCGGAGTGGTAAGATCAAGTTGTCAATTACGTACCTATATATTTTTAAGGAGTCTTTTGTATATCAAGTCAACTTGGAATGAGTTAATGTTGACGATAAATGACGTTCTTACCGCGATGATCTTCCTTGGCACTCGACTATACATCCAAGAGACAAACAAAAGTTTAAGCAAAGCAAGAGGCACAGCAATTGTATTGCTCAACACAAAGATGATGGGGAATTACACCTCAGTTCAGGAGATGATCAAACTTAATAGCAAGTTGCCATGGGGGAACCATTTGTCACTGTTGCATGTACCAATACCCAAGTTGTTAACGAATAGTGAAGAACAATTTTCAGATAATGCACTTGACTTTGTCTGGAAGACACAGAAAATTATAAGGAGCAAAAGACATTCTTTGGGTATTCATCTCACTGCTGGGTTCTTGGAGATTCTCAACAAATTTGGAGGCCATGAGGCAGCAGCAAGATACATCCGTAACACATTGAAGAAGTCAAGCATGATAATTTCCAATATGATTGGATCGGTGGAACAGATGTCTTTGGCAAATCATCCAGTTAAAGGCTTATACTTTTTGGTCTTTGGTTCACCTGAGGGCCTTGATGTAACAATAGTAAGTTATATGGGAAAGGTGAGGATTGCCTTCAAGATGGAAAAGGGTCTTATTGATCCACCAAAGTTCAAGTCATGCATGGAAAAGTCTTTTGAGATGATACTCGAAGCCTCGGAGAAAACTGCTGTGCAGAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

384

Amino Acids

43.42

Weight (kDa)

9.69

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_C PF06974 223 - 372 1.7e-35 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 779
AccII CGCG 1 cut(s) 515
AciI CCGC 1 cut(s) 513
AclWI GGATC 2 cut(s) 931, 1064
AcsI RAATTY 3 cut(s) 36, 220, 842
AfaI GTAC 3 cut(s) 53, 433, 696
AfeI AGCGCT 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 962
AgsI TTSAA 6 cut(s) 88, 253, 337, 889, 1048, 1084
AluBI AGCT 2 cut(s) 91, 155
AluI AGCT 2 cut(s) 91, 155
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 2 cut(s) 931, 1064
Aor51HI AGCGCT 1 cut(s) 102
AoxI GGCC 2 cut(s) 850, 997
ApeKI GCWGC 4 cut(s) 68, 202, 860, 863
ApoI RAATTY 3 cut(s) 36, 220, 842
ArsI GACNNNNNNTTYG 2 cut(s) 1070, 1102
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 997
AsuHPI GGTGA 4 cut(s) 86, 119, 981, 1045
AxyI CCTNAGG 1 cut(s) 993
BaeI ACNNNNGTAYC 2 cut(s) 862, 895
BbsI GAAGAC 2 cut(s) 241, 770
BbvI GCAGC 4 cut(s) 80, 214, 872, 875
BccI CCATC 4 cut(s) 104, 317, 607, 1045
BclI TGATCA 2 cut(s) 295, 642
BcoDI GTCTC 1 cut(s) 545
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 4 cut(s) 69, 203, 861, 864
BlsI GCNGC 4 cut(s) 70, 204, 862, 865
BmgT120I GGNCC 1 cut(s) 997
BmiI GGNNCC 1 cut(s) 674
BpiI GAAGAC 2 cut(s) 241, 770
BsaAI YACGTR 1 cut(s) 431
BsaJI CCNNGG 4 cut(s) 206, 526, 665, 1125
Bsc4I CCNNNNNNNGG 1 cut(s) 962
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 956
Bse21I CCTNAGG 1 cut(s) 993
BseDI CCNNGG 4 cut(s) 206, 526, 665, 1125
BseGI GGATG 3 cut(s) 543, 873, 952
BseLI CCNNNNNNNGG 1 cut(s) 962
BseMII CTCAG 2 cut(s) 642, 984
BseNI ACTGG 1 cut(s) 956
BseXI GCAGC 4 cut(s) 80, 214, 872, 875
BseYI CCCAGC 1 cut(s) 818
Bsh1236I CGCG 1 cut(s) 515
BshFI GGCC 2 cut(s) 852, 999
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 962
BsmAI GTCTC 1 cut(s) 545
BsnI GGCC 2 cut(s) 852, 999
Bsp143I GATC 7 cut(s) 295, 311, 413, 519, 642, 923, 1069
Bsp19I CCATGG 2 cut(s) 206, 665
BspACI CCGC 1 cut(s) 513
BspANI GGCC 2 cut(s) 852, 999
BspCNI CTCAG 2 cut(s) 641, 985
BspFNI CGCG 1 cut(s) 515
BspLI GGNNCC 1 cut(s) 674
BspPI GGATC 2 cut(s) 931, 1064
BspQI GCTCTTC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 956
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 206, 526, 665, 1125
BssMI GATC 7 cut(s) 295, 311, 413, 519, 642, 923, 1069
BssT1I CCWWGG 3 cut(s) 206, 526, 665
Bst4CI ACNGT 2 cut(s) 79, 687
Bst6I CTCTTC 3 cut(s) 138, 174, 206
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 73, 398
BstDEI CTNAG 2 cut(s) 628, 993
BstDSI CCRYGG 2 cut(s) 206, 665
BstF5I GGATG 3 cut(s) 543, 873, 952
BstFNI CGCG 1 cut(s) 515
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 7 cut(s) 298, 314, 416, 522, 645, 926, 1072
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 7 cut(s) 295, 311, 413, 519, 642, 923, 1069
BstNSI RCATGY 1 cut(s) 695
BstSNI TACGTA 1 cut(s) 431
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 4 cut(s) 80, 214, 872, 875
BstV2I GAAGAC 2 cut(s) 241, 770
BstXI CCANNNNNNTGG 1 cut(s) 104
Bsu36I CCTNAGG 1 cut(s) 993
BsuRI GGCC 2 cut(s) 852, 999
BtgI CCRYGG 2 cut(s) 206, 665
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 3 cut(s) 543, 873, 952
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 3 cut(s) 75, 683, 813
Cac8I GCNNGC 2 cut(s) 73, 398
CfoI GCGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 997
Csp6I GTAC 3 cut(s) 52, 432, 695
CviAII CATG 8 cut(s) 124, 207, 666, 692, 854, 901, 1089, 1093
CviQI GTAC 3 cut(s) 52, 432, 695
DdeI CTNAG 2 cut(s) 628, 993
DpnI GATC 7 cut(s) 297, 313, 415, 521, 644, 925, 1071
DpnII GATC 7 cut(s) 295, 311, 413, 519, 642, 923, 1069
DraI TTTAAA 1 cut(s) 273
Eam1104I CTCTTC 3 cut(s) 138, 174, 206
EarI CTCTTC 3 cut(s) 138, 174, 206
Eco105I TACGTA 1 cut(s) 431
Eco130I CCWWGG 3 cut(s) 206, 526, 665
Eco47III AGCGCT 1 cut(s) 102
Eco81I CCTNAGG 1 cut(s) 993
EcoO109I RGGNCCY 1 cut(s) 997
EcoT14I CCWWGG 3 cut(s) 206, 526, 665
EcoT22I ATGCAT 1 cut(s) 1094
ErhI CCWWGG 3 cut(s) 206, 526, 665
FaeI CATG 8 cut(s) 127, 210, 669, 695, 857, 904, 1092, 1096
FalI AAGNNNNNCTT 2 cut(s) 781, 813
FatI CATG 8 cut(s) 123, 206, 665, 691, 853, 900, 1088, 1092
FbaI TGATCA 2 cut(s) 295, 642
Fnu4HI GCNGC 4 cut(s) 69, 203, 861, 864
FokI GGATG 3 cut(s) 530, 860, 939
Fsp4HI GCNGC 4 cut(s) 69, 203, 861, 864
GlaI GCGC 1 cut(s) 102
GluI GCNGC 4 cut(s) 69, 203, 861, 864
GsaI CCCAGC 1 cut(s) 822
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 2 cut(s) 852, 999
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 103
Hin1II CATG 8 cut(s) 127, 210, 669, 695, 857, 904, 1092, 1096
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 3 cut(s) 471, 492, 714
HindII GTYRAC 3 cut(s) 471, 492, 714
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 3 cut(s) 378, 451, 832
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 1 cut(s) 72
HphI GGTGA 4 cut(s) 86, 119, 981, 1045
Hpy166II GTNNAC 5 cut(s) 146, 471, 492, 714, 989
Hpy188I TCNGA 5 cut(s) 265, 311, 404, 739, 1129
Hpy188III TCNNGA 5 cut(s) 189, 391, 635, 760, 1048
Hpy8I GTNNAC 5 cut(s) 146, 471, 492, 714, 989
HpyAV CCTTC 4 cut(s) 174, 186, 190, 1054
HpyCH4III ACNGT 2 cut(s) 79, 687
HpyCH4IV ACGT 2 cut(s) 430, 504
HpyCH4V TGCA 6 cut(s) 68, 347, 691, 746, 1092, 1144
HpyF3I CTNAG 2 cut(s) 628, 993
HpySE526I ACGT 2 cut(s) 430, 504
Hsp92II CATG 8 cut(s) 127, 210, 669, 695, 857, 904, 1092, 1096
HspAI GCGC 1 cut(s) 101
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Ksp22I TGATCA 2 cut(s) 295, 642
KspAI GTTAAC 1 cut(s) 714
Kzo9I GATC 7 cut(s) 295, 311, 413, 519, 642, 923, 1069
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 783
LpnPI CCDG 8 cut(s) 16, 85, 382, 620, 745, 804, 969, 1005
Lsp1109I GCAGC 4 cut(s) 80, 214, 872, 875
MaeII ACGT 2 cut(s) 430, 504
MaeIII GTNAC 4 cut(s) 226, 681, 878, 1006
MalI GATC 7 cut(s) 297, 313, 415, 521, 644, 925, 1071
MboI GATC 7 cut(s) 295, 311, 413, 519, 642, 923, 1069
MfeI CAATTG 2 cut(s) 342, 588
MlyI GAGTC 1 cut(s) 460
Mph1103I ATGCAT 1 cut(s) 1094
MroNI GCCGGC 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 8 cut(s) 272, 446, 485, 566, 651, 713, 960, 1153
MslI CAYNNNNRTG 1 cut(s) 608
MspI CCGG 1 cut(s) 72
MunI CAATTG 2 cut(s) 342, 588
MvnI CGCG 1 cut(s) 515
NaeI GCCGGC 1 cut(s) 73
NcoI CCATGG 2 cut(s) 206, 665
NdeII GATC 7 cut(s) 295, 311, 413, 519, 642, 923, 1069
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 8 cut(s) 127, 210, 669, 695, 857, 904, 1092, 1096
NlaIV GGNNCC 1 cut(s) 674
NmuCI GTSAC 2 cut(s) 226, 681
NsiI ATGCAT 1 cut(s) 1094
NspI RCATGY 1 cut(s) 695
PciSI GCTCTTC 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 378, 832
PflFI GACNNNGTC 1 cut(s) 755
PkrI GCNGC 4 cut(s) 70, 204, 862, 865
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
Ppu21I YACGTR 1 cut(s) 431
PsiI TTATAA 1 cut(s) 779
PspFI CCCAGC 1 cut(s) 818
PspN4I GGNNCC 1 cut(s) 674
PspPI GGNCC 1 cut(s) 997
PsyI GACNNNGTC 1 cut(s) 755
RsaI GTAC 3 cut(s) 53, 433, 696
RsaNI GTAC 3 cut(s) 52, 432, 695
RseI CAYNNNNRTG 1 cut(s) 608
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 8 cut(s) 272, 446, 485, 566, 651, 713, 960, 1153
SatI GCNGC 4 cut(s) 69, 203, 861, 864
Sau3AI GATC 7 cut(s) 295, 311, 413, 519, 642, 923, 1069
Sau96I GGNCC 1 cut(s) 997
SchI GAGTC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 608
SnaBI TACGTA 1 cut(s) 431
SsiI CCGC 1 cut(s) 513
SspI AATATT 1 cut(s) 84
StyI CCWWGG 3 cut(s) 206, 526, 665
TaaI ACNGT 2 cut(s) 79, 687
TaiI ACGT 2 cut(s) 433, 507
TaqI TCGA 2 cut(s) 535, 1119
TfiI GAWTC 2 cut(s) 378, 832
Tru1I TTAA 8 cut(s) 272, 446, 485, 566, 651, 713, 960, 1153
Tru9I TTAA 8 cut(s) 272, 446, 485, 566, 651, 713, 960, 1153
TscAI CASTG 3 cut(s) 82, 690, 820
TseFI GTSAC 2 cut(s) 226, 681
TseI GCWGC 4 cut(s) 68, 202, 860, 863
Tsp45I GTSAC 2 cut(s) 226, 681
TspDTI ATGAA 1 cut(s) 797
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 3 cut(s) 82, 690, 820
Tth111I GACNNNGTC 1 cut(s) 755
XapI RAATTY 3 cut(s) 36, 220, 842
XceI RCATGY 1 cut(s) 695
XmnI GAANNNNTTC 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.