Rmu_sc0000782.1_g000006

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000782.1
OG0000634
Physical Location & Seq
Reverse (-)
38081 .. 39267
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000782.1_g000006.1.cds

Sequence Viewer

Length: 954 bp
atgcaggttgaaagtgcagataaaaagaaaaagcagtggaagaaggttgcagtgaagctggaagaccacgtctatgtccccattttcccctctggaatgtcatcacctgcatcatacgatatttactttgatgagtatataacgaagatagcatcagaaacattcccacaaagcaggccattatgggaacttcatcttttcaagtacccaacaagtcatgcagctggacacatgatattcaagatccaccatgcccttggcgatggctactctctcatgggcgctcttctctcttgcctccagaatgctcacaatccttccattcctctgacatttccgacattaaagagtgcaaaaaatgaaactagtagtcgatctcgtgcgtttgagtttatgccgaagatactttcttccgttttcaacggtgcatgggatttcagttggagcattttgaagggcacttgggttgaagatgatcgaacaccaataaggtccggtgttgaaggagttgagtttcgacctgtgtcggtgtcaaccttgatgctgcctattgaggaaattaaacttatcaagaacaagcttggagtgacgataaatgatgtaattacaggaacaatctttatgggcatccgaatgtacattcaagagatgaatagtcaaaaatcaagtagccaaaattgcacagcactggtgttgctgaatactagacttgttgcgggttacaagtcagtgcaggagatgttgatcgaaacaaataagtcttggggaaaccgatttgtgttcttgcaagtctcggtgcccaagtcgagtgaagtttcaaagccactggattttgtgtgggaagcacgtaatataattcagagacagagaaaatcttcagcttggtatctcaccactaggctctgggacattttgaagaaatttagaggcgctgaggtaactaattatcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

317

Amino Acids

36.19

Weight (kDa)

9.44

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 115
AccB1I GGYRCC 1 cut(s) 796
AciI CCGC 1 cut(s) 716
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 920
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 2 cut(s) 206, 638
AhlI ACTAGT 1 cut(s) 365
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 4 cut(s) 58, 224, 580, 881
AluI AGCT 4 cut(s) 58, 224, 580, 881
Alw26I GTCTC 2 cut(s) 796, 856
AlwI GGATC 1 cut(s) 238
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 221, 544
ApoI RAATTY 1 cut(s) 920
Asp700I GAANNNNTTC 1 cut(s) 874
AspLEI GCGC 2 cut(s) 284, 932
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 96, 883
AvaII GGWCC 1 cut(s) 492
BaeGI GKGCMC 2 cut(s) 461, 801
BanI GGYRCC 1 cut(s) 796
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 933
BbvI GCAGC 2 cut(s) 233, 531
BccI CCATC 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 796, 856
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 3 cut(s) 366, 705, 897
BfoI RGCGCY 2 cut(s) 285, 933
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 2 cut(s) 222, 545
BlsI GCNGC 2 cut(s) 223, 546
Bme18I GGWCC 1 cut(s) 492
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 1 cut(s) 798
BmsI GCATC 4 cut(s) 119, 161, 531, 636
BoxI GACNNNNGTC 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 933
BsaAI YACGTR 1 cut(s) 848
BsaBI GATNNNNATC 1 cut(s) 743
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 693, 831
Bse8I GATNNNNATC 1 cut(s) 743
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 627
BseJI GATNNNNATC 1 cut(s) 743
BseMII CTCAG 1 cut(s) 924
BseNI ACTGG 2 cut(s) 693, 831
BseSI GKGCMC 2 cut(s) 461, 801
BseXI GCAGC 2 cut(s) 233, 531
BsgI GTGCAG 2 cut(s) 36, 752
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 796
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 2 cut(s) 62, 920
BsmAI GTCTC 2 cut(s) 796, 856
BsmFI GGGAC 2 cut(s) 62, 920
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 461, 801
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 4 cut(s) 243, 374, 475, 744
BspACI CCGC 1 cut(s) 716
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 925
BspLI GGNNCC 1 cut(s) 798
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 291
BspT107I GGYRCC 1 cut(s) 796
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 2 cut(s) 693, 831
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 4 cut(s) 243, 374, 475, 744
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 256
Bst2BI CACGAG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 291
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 933
BstF5I GGATG 1 cut(s) 627
BstH2I RGCGCY 2 cut(s) 285, 933
BstHHI GCGC 2 cut(s) 284, 932
BstKTI GATC 4 cut(s) 246, 377, 478, 747
BstMAI GTCTC 2 cut(s) 796, 856
BstMBI GATC 4 cut(s) 243, 374, 475, 744
BstMWI GCNNNNNNNGC 1 cut(s) 678
BstPAI GACNNNNGTC 1 cut(s) 523
BstSLI GKGCMC 2 cut(s) 461, 801
BstV1I GCAGC 2 cut(s) 233, 531
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 257
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 627
BtsI GCAGTG 2 cut(s) 41, 57
BtsIMutI CAGTG 5 cut(s) 41, 57, 686, 735, 824
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 176
CfoI GCGC 2 cut(s) 284, 932
Cfr13I GGNCC 1 cut(s) 492
Csp6I GTAC 2 cut(s) 205, 637
CviAII CATG 5 cut(s) 218, 232, 251, 277, 429
CviJI RGCY 9 cut(s) 58, 178, 224, 267, 580, 672, 823, 881, 901
CviKI_1 RGCY 9 cut(s) 58, 178, 224, 267, 580, 672, 823, 881, 901
CviQI GTAC 2 cut(s) 205, 637
DdeI CTNAG 1 cut(s) 933
DpnI GATC 4 cut(s) 245, 376, 477, 746
DpnII GATC 4 cut(s) 243, 374, 475, 744
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 5 cut(s) 221, 235, 254, 280, 432
FaqI GGGAC 2 cut(s) 62, 920
FatI CATG 5 cut(s) 217, 231, 250, 276, 428
FauI CCCGC 1 cut(s) 709
Fnu4HI GCNGC 2 cut(s) 222, 545
FokI GGATG 1 cut(s) 614
Fsp4HI GCNGC 2 cut(s) 222, 545
FspBI CTAG 3 cut(s) 366, 705, 897
GlaI GCGC 2 cut(s) 283, 931
GluI GCNGC 2 cut(s) 222, 545
GsuI CTGGAG 1 cut(s) 284
HaeII RGCGCY 2 cut(s) 285, 933
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 495
HhaI GCGC 2 cut(s) 284, 932
Hin1II CATG 5 cut(s) 221, 235, 254, 280, 432
Hin6I GCGC 2 cut(s) 282, 930
HinP1I GCGC 2 cut(s) 282, 930
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 578
HpaII CCGG 1 cut(s) 495
HphI GGTGA 2 cut(s) 96, 883
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 5 cut(s) 157, 330, 339, 632, 861
Hpy188III TCNNGA 5 cut(s) 93, 241, 301, 571, 644
Hpy8I GTNNAC 1 cut(s) 534
HpyAV CCTTC 4 cut(s) 37, 327, 448, 497
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4IV ACGT 2 cut(s) 69, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 678
HpyF3I CTNAG 1 cut(s) 933
HpySE526I ACGT 2 cut(s) 69, 847
Hsp92II CATG 5 cut(s) 221, 235, 254, 280, 432
HspAI GCGC 2 cut(s) 282, 930
Kzo9I GATC 4 cut(s) 243, 374, 475, 744
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 444
Lsp1109I GCAGC 2 cut(s) 233, 531
LweI GCATC 4 cut(s) 119, 161, 531, 636
MaeI CTAG 3 cut(s) 366, 705, 897
MaeII ACGT 2 cut(s) 69, 847
MaeIII GTNAC 3 cut(s) 586, 719, 937
MalI GATC 4 cut(s) 245, 376, 477, 746
MboI GATC 4 cut(s) 243, 374, 475, 744
MboII GAAGA 9 cut(s) 52, 74, 157, 278, 402, 412, 482, 867, 928
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 2 cut(s) 461, 801
MluCI AATT 6 cut(s) 558, 603, 676, 855, 920, 943
MmeI TCCRAC 2 cut(s) 362, 422
MnlI CCTC 6 cut(s) 100, 308, 336, 547, 920, 928
MroXI GAANNNNTTC 1 cut(s) 874
MseI TTAA 2 cut(s) 344, 561
MslI CAYNNNNRTG 2 cut(s) 72, 632
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 678
NdeII GATC 4 cut(s) 243, 374, 475, 744
NlaIII CATG 5 cut(s) 221, 235, 254, 280, 432
NlaIV GGNNCC 1 cut(s) 798
NmuCI GTSAC 1 cut(s) 586
PaqCI CACCTGC 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 291
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 874
PflFI GACNNNGTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 223, 546
Ppu21I YACGTR 1 cut(s) 848
PshAI GACNNNNGTC 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 798
PspPI GGNCC 1 cut(s) 492
PsuI RGATCY 1 cut(s) 243
PsyI GACNNNGTC 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 206, 638
RsaNI GTAC 2 cut(s) 205, 637
RseI CAYNNNNRTG 2 cut(s) 72, 632
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 344, 561
SatI GCNGC 2 cut(s) 222, 545
Sau3AI GATC 4 cut(s) 243, 374, 475, 744
Sau96I GGNCC 1 cut(s) 492
SduI GDGCHC 2 cut(s) 461, 801
SfaNI GCATC 4 cut(s) 119, 161, 531, 636
SinI GGWCC 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 72, 632
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 6 cut(s) 558, 603, 676, 855, 920, 943
SsiI CCGC 1 cut(s) 716
SspMI CTAG 3 cut(s) 366, 705, 897
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 425
TaiI ACGT 2 cut(s) 72, 850
TaqI TCGA 5 cut(s) 373, 478, 517, 747, 806
TasI AATT 6 cut(s) 558, 603, 676, 855, 920, 943
TatI WGTACW 1 cut(s) 636
Tru1I TTAA 2 cut(s) 344, 561
Tru9I TTAA 2 cut(s) 344, 561
TscAI CASTG 5 cut(s) 41, 57, 693, 735, 831
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 2 cut(s) 221, 544
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 3 cut(s) 182, 375, 665
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 5 cut(s) 41, 57, 693, 735, 831
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 492
XapI RAATTY 1 cut(s) 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 874
XspI CTAG 3 cut(s) 366, 705, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.