Rh1DG220600

Wax ester synthase-like Acyl-CoA acyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000634
Physical Location & Seq
Forward (+)
42955406 .. 42983187
27782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG220600.1

Sequence Viewer

Length: 1227 bp
ATGATTGTCATTAGCATTGAATGTCACAACTCACAACAATCGTTGGGTAAAGAATTTAATTCTTTTTACCTAAATAGCTCTGTGCGACTGTACGTACGTAGTTCAGGTTCCAAGGAAGACCGGAAATATATTACACAGAGACGGCAAAAAATAGCCCAGCTAGTATCAAATAATATGGAGTTTGGAGAAGAAGGACTACTACTGGAGCCGGTGAGCCCTGGTGGTCAATTCTTCAACAGTACTGTCTTATCTCTTGCAATTATTTCCGTTTTGGAATTGGAATCACAATTTTCAATGAACGATTCTCAAACTTTTTCACTTCTTAAAAATGTGTTCCTCCCGATCAATCCACGCTTCTCTTCCATCATGGTTGAAGGTGTGGATGAAAAGAATAAGCAGTGGAAGAGGGTTCAAGTGAAGTTGGAAGACCATGTGCATGTCCCCATTTTCCCCTCTGGAATGTCACTTGAATCATACGATACTTACTTTGATGAGTATATAACGAAGATAGCATCAGAAACATTCCCACAAAGCAGGCCATTGTGGGAACTTCATCTTTTCAAGTACCCAACAAGTCATGCAGCTGGACAAATAATATTCAAGATCCACCATGCCCTTGGCGATGGCTACTCTCTCATGGGCGCTCTTCTCTCTTGTCTCCAAAATGCTCACAATCCTGCTCTTCCCCTGACATTTCCTTCACTAAAGGGTGCAAAGAATGAAACTAGTAGTGGATCTCGTGTATTTGAGTTTGTACCCAAGATATTTTCTGCTGTTATCAACGGTGCATGGGATTTCGGTTGGAGCATTTTGAAGGGCACTTGGGTTGAAGATGATCGAACACCAATAAGGTCAGGCGTTGTTGGAGTTGAGTTTTGGCCTGTGTCCATGTCAACCTTGATGCTGTCTATTGAGGAAATCAAACTTATCAAGAACAAGCTTGGGGTGACGATAAATGATGTTATTGCGGGAACAATCTTTCTAGGCACCCGAATGTACATGCAACAGATGAATAGTGAAAAATCAAGTAGCCAGAATTGCACGGCACTCGTGTTGCTGAATACTAGACTTGTTGCGAATTACAAGTCGGTGCAGGAGATGTTGATGGAACCAAGCAAGTCTTCTTGGGGCAACCAATTTGTGTTCTTGCATGTCCCGGACTCCCGGTGCCCAAGTCGAGTGAAGTTTCCAAGCCATTGGATTTTGTATGGGAAGCACATAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

408

Amino Acids

46.14

Weight (kDa)

8.5

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_cat PF03007 123 - 322 5.4e-09 Wax ester synthase/diacylglycerol acyltransferase catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 986, 1167
AciI CCGC 1 cut(s) 968
AclWI GGATC 2 cut(s) 598, 742
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 6 cut(s) 92, 96, 241, 566, 756, 998
AhlI ACTAGT 1 cut(s) 725
AjnI CCWGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 1105, 1137
AluBI AGCT 4 cut(s) 78, 160, 584, 940
AluI AGCT 4 cut(s) 78, 160, 584, 940
Alw26I GTCTC 2 cut(s) 133, 662
AlwI GGATC 2 cut(s) 598, 742
AoxI GGCC 2 cut(s) 536, 878
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 1070, 1102
AspLEI GCGC 1 cut(s) 644
AsuC2I CCSGG 2 cut(s) 1157, 1165
AsuHPI GGTGA 2 cut(s) 223, 958
BaeGI GKGCMC 2 cut(s) 821, 1172
BanI GGYRCC 2 cut(s) 986, 1167
BanII GRGCYC 1 cut(s) 218
BarI GAAGNNNNNNTAC 4 cut(s) 180, 183, 212, 215
BauI CACGAG 2 cut(s) 738, 1049
BbsI GAAGAC 3 cut(s) 123, 432, 1113
BbvI GCAGC 1 cut(s) 593
BccI CCATC 3 cut(s) 371, 617, 1099
BceAI ACGGC 2 cut(s) 158, 1059
BcgI CGANNNNNNTGC 2 cut(s) 1030, 1064
BciT130I CCWGG 1 cut(s) 219
BcnI CCSGG 2 cut(s) 1157, 1165
BcoDI GTCTC 2 cut(s) 133, 662
BcuI ACTAGT 1 cut(s) 725
BfaI CTAG 4 cut(s) 161, 726, 983, 1065
BfoI RGCGCY 1 cut(s) 645
BisI GCNGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 583
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 3 cut(s) 219, 1157, 1165
BmiI GGNNCC 5 cut(s) 109, 207, 988, 1110, 1169
BmrFI CCNGG 3 cut(s) 219, 1157, 1165
BmsI GCATC 2 cut(s) 521, 891
BpiI GAAGAC 3 cut(s) 123, 432, 1113
BpmI CTGGAG 1 cut(s) 224
BpuMI CCSGG 2 cut(s) 1157, 1165
BsaAI YACGTR 2 cut(s) 94, 98
BsaJI CCNNGG 3 cut(s) 111, 217, 616
BsaWI WCCGGW 1 cut(s) 120
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 111, 217, 616
BseGI GGATG 1 cut(s) 388
BseNI ACTGG 1 cut(s) 207
BseSI GKGCMC 2 cut(s) 821, 1172
BseXI GCAGC 1 cut(s) 593
BseYI CCCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 1112
BshFI GGCC 2 cut(s) 538, 880
BshNI GGYRCC 2 cut(s) 986, 1167
BsiSI CCGG 4 cut(s) 121, 209, 1157, 1165
BsiWI CGTACG 1 cut(s) 94
BslFI GGGAC 2 cut(s) 425, 1139
BsmAI GTCTC 2 cut(s) 133, 662
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 425, 1139
BsnI GGCC 2 cut(s) 538, 880
Bsp1286I GDGCHC 3 cut(s) 218, 821, 1172
Bsp1407I TGTACA 1 cut(s) 996
Bsp143I GATC 4 cut(s) 342, 603, 734, 835
BspACI CCGC 1 cut(s) 968
BspANI GGCC 2 cut(s) 538, 880
BspLI GGNNCC 5 cut(s) 109, 207, 988, 1110, 1169
BspPI GGATC 2 cut(s) 598, 742
BspQI GCTCTTC 2 cut(s) 651, 687
BspT107I GGYRCC 2 cut(s) 986, 1167
BsrFI RCCGGY 1 cut(s) 208
BsrGI TGTACA 1 cut(s) 996
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 111, 217, 616
BssMI GATC 4 cut(s) 342, 603, 734, 835
BssSI CACGAG 2 cut(s) 738, 1049
BssT1I CCWWGG 2 cut(s) 111, 616
Bst2BI CACGAG 2 cut(s) 738, 1049
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 4 cut(s) 90, 239, 244, 785
Bst6I CTCTTC 4 cut(s) 364, 398, 651, 687
BstAUI TGTACA 1 cut(s) 996
BstBAI YACGTR 2 cut(s) 94, 98
BstC8I GCNNGC 1 cut(s) 536
BstF5I GGATG 1 cut(s) 388
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 4 cut(s) 345, 606, 737, 838
BstMAI GTCTC 2 cut(s) 133, 662
BstMBI GATC 4 cut(s) 342, 603, 734, 835
BstMWI GCNNNNNNNGC 1 cut(s) 1038
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 3 cut(s) 440, 1003, 1154
BstSCI CCNGG 3 cut(s) 217, 1155, 1163
BstSLI GKGCMC 2 cut(s) 821, 1172
BstSNI TACGTA 2 cut(s) 94, 98
BstV1I GCAGC 1 cut(s) 593
BstV2I GAAGAC 3 cut(s) 123, 432, 1113
BstX2I RGATCY 2 cut(s) 603, 734
BstXI CCANNNNNNTGG 2 cut(s) 617, 1197
BstYI RGATCY 2 cut(s) 603, 734
BsuRI GGCC 2 cut(s) 538, 880
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 536
CfoI GCGC 1 cut(s) 644
Cfr10I RCCGGY 1 cut(s) 208
Csp6I GTAC 6 cut(s) 91, 95, 240, 565, 755, 997
CviQI GTAC 6 cut(s) 91, 95, 240, 565, 755, 997
DpnI GATC 4 cut(s) 344, 605, 736, 837
DpnII GATC 4 cut(s) 342, 603, 734, 835
Eam1104I CTCTTC 4 cut(s) 364, 398, 651, 687
EarI CTCTTC 4 cut(s) 364, 398, 651, 687
Eco105I TACGTA 2 cut(s) 94, 98
Eco130I CCWWGG 2 cut(s) 111, 616
Eco24I GRGCYC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 2 cut(s) 111, 616
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 2 cut(s) 111, 616
Esp3I CGTCTC 1 cut(s) 133
FalI AAGNNNNNCTT 2 cut(s) 1105, 1137
FaqI GGGAC 2 cut(s) 425, 1139
FauI CCCGC 1 cut(s) 961
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 582
FspBI CTAG 4 cut(s) 161, 726, 983, 1065
GlaI GCGC 1 cut(s) 643
GluI GCNGC 1 cut(s) 582
GsaI CCCAGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 2 cut(s) 538, 880
HapII CCGG 4 cut(s) 121, 209, 1157, 1165
HhaI GCGC 1 cut(s) 644
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 4 cut(s) 281, 302, 470, 1160
HpaII CCGG 4 cut(s) 121, 209, 1157, 1165
HphI GGTGA 2 cut(s) 223, 958
Hpy166II GTNNAC 1 cut(s) 894
Hpy188I TCNGA 1 cut(s) 517
Hpy188III TCNNGA 4 cut(s) 340, 456, 601, 931
Hpy8I GTNNAC 1 cut(s) 894
HpyAV CCTTC 4 cut(s) 185, 368, 708, 808
HpyCH4III ACNGT 4 cut(s) 90, 239, 244, 785
HpyCH4IV ACGT 2 cut(s) 93, 97
HpyCH4V TGCA 9 cut(s) 257, 436, 581, 713, 788, 1003, 1041, 1093, 1150
HpyF10VI GCNNNNNNNGC 1 cut(s) 1038
HpySE526I ACGT 2 cut(s) 93, 97
HspAI GCGC 1 cut(s) 642
Kzo9I GATC 4 cut(s) 342, 603, 734, 835
LguI GCTCTTC 2 cut(s) 651, 687
LmnI GCTCC 2 cut(s) 205, 804
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 2 cut(s) 521, 891
MaeI CTAG 4 cut(s) 161, 726, 983, 1065
MaeII ACGT 2 cut(s) 93, 97
MaeIII GTNAC 3 cut(s) 23, 462, 946
MalI GATC 4 cut(s) 344, 605, 736, 837
MboI GATC 4 cut(s) 342, 603, 734, 835
MflI RGATCY 2 cut(s) 603, 734
MhlI GDGCHC 3 cut(s) 218, 821, 1172
MluCI AATT 9 cut(s) 53, 58, 227, 258, 275, 287, 1036, 1078, 1136
MlyI GAGTC 1 cut(s) 1154
MmeI TCCRAC 3 cut(s) 402, 782, 844
MnlI CCTC 4 cut(s) 347, 399, 463, 907
MseI TTAA 2 cut(s) 57, 324
MslI CAYNNNNRTG 2 cut(s) 435, 992
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 4 cut(s) 121, 209, 1157, 1165
MspR9I CCNGG 3 cut(s) 219, 1157, 1165
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 1038
NciI CCSGG 2 cut(s) 1157, 1165
NdeII GATC 4 cut(s) 342, 603, 734, 835
NlaIV GGNNCC 5 cut(s) 109, 207, 988, 1110, 1169
NmuCI GTSAC 3 cut(s) 23, 462, 946
NspI RCATGY 3 cut(s) 440, 1003, 1154
PciSI GCTCTTC 2 cut(s) 651, 687
PfeI GAWTC 3 cut(s) 281, 302, 470
Pfl23II CGTACG 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 1155
PkrI GCNGC 1 cut(s) 583
PleI GAGTC 1 cut(s) 1154
PpsI GAGTC 1 cut(s) 1154
Ppu21I YACGTR 2 cut(s) 94, 98
Psp6I CCWGG 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 217
PspLI CGTACG 1 cut(s) 94
PspN4I GGNNCC 5 cut(s) 109, 207, 988, 1110, 1169
PsrI GAACNNNNNNTAC 2 cut(s) 91, 123
PsuI RGATCY 2 cut(s) 603, 734
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 6 cut(s) 92, 96, 241, 566, 756, 998
RsaNI GTAC 6 cut(s) 91, 95, 240, 565, 755, 997
RseI CAYNNNNRTG 2 cut(s) 435, 992
SapI GCTCTTC 2 cut(s) 651, 687
SaqAI TTAA 2 cut(s) 57, 324
SatI GCNGC 1 cut(s) 582
Sau3AI GATC 4 cut(s) 342, 603, 734, 835
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 1 cut(s) 1154
ScrFI CCNGG 3 cut(s) 219, 1157, 1165
SduI GDGCHC 3 cut(s) 218, 821, 1172
SfaNI GCATC 2 cut(s) 521, 891
SmiMI CAYNNNNRTG 2 cut(s) 435, 992
SnaBI TACGTA 2 cut(s) 94, 98
SpeI ACTAGT 1 cut(s) 725
Sse9I AATT 9 cut(s) 53, 58, 227, 258, 275, 287, 1036, 1078, 1136
SsiI CCGC 1 cut(s) 968
SspI AATATT 1 cut(s) 597
SspMI CTAG 4 cut(s) 161, 726, 983, 1065
StyD4I CCNGG 3 cut(s) 217, 1155, 1163
StyI CCWWGG 2 cut(s) 111, 616
TaaI ACNGT 4 cut(s) 90, 239, 244, 785
TaiI ACGT 2 cut(s) 96, 100
TaqI TCGA 2 cut(s) 838, 1177
TasI AATT 9 cut(s) 53, 58, 227, 258, 275, 287, 1036, 1078, 1136
TatI WGTACW 2 cut(s) 239, 996
TfiI GAWTC 3 cut(s) 281, 302, 470
Tru1I TTAA 2 cut(s) 57, 324
Tru9I TTAA 2 cut(s) 57, 324
TscAI CASTG 1 cut(s) 404
TseFI GTSAC 3 cut(s) 23, 462, 946
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 3 cut(s) 23, 462, 946
TspDTI ATGAA 5 cut(s) 311, 399, 542, 735, 1025
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 404
XapI RAATTY 1 cut(s) 53
XceI RCATGY 3 cut(s) 440, 1003, 1154
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XspI CTAG 4 cut(s) 161, 726, 983, 1065
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.