MD10G1159400.v1.1

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000634
Physical Location & Seq
Reverse (-)
25053792 .. 25054243
452 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1159400.v1.1.491

Sequence Viewer

Length: 297 bp
ATGTTGCAGGTAGCATCACGATACATGCACAAAAGACTGAAGAAGTCGAGCCTCATGATATCAAATATGATAGGGCCTACTGAGAAAACAGCTTTGGCTGGTCATCCAATCAAGGGTGTATACTTCATGGTTTTAGGCATACCTCAGGACCTTATCATAACAATAGTCAGTTATGTGGGAGACTTGAGGATTTCCTTTGGAACTAAGAAGGGATTTATTGATCCTCAAAAGTTCAAGTCATGCTTTAAAAATGCGTTTGAGATGATACTAGACAAAATTCCTATGCAGAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

99

Amino Acids

11.1

Weight (kDa)

9.95

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_C PF06974 3 - 89 8.9e-26 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 120
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 74, 148
AvaII GGWCC 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 74, 148
BmsI GCATC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse21I CCTNAGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 2 cut(s) 72, 158
BshFI GGCC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 73, 157
BspHI TCATGA 1 cut(s) 54
BspPI GGATC 1 cut(s) 215
BssMI GATC 1 cut(s) 220
BssNAI GTATAC 1 cut(s) 121
Bst1107I GTATAC 1 cut(s) 121
BstDEI CTNAG 3 cut(s) 81, 144, 204
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 28
BstZ17I GTATAC 1 cut(s) 121
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 103
CciI TCATGA 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 74, 148
CviAII CATG 4 cut(s) 25, 55, 127, 240
CviJI RGCY 4 cut(s) 51, 76, 92, 98
CviKI_1 RGCY 4 cut(s) 51, 76, 92, 98
DdeI CTNAG 3 cut(s) 81, 144, 204
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DraI TTTAAA 1 cut(s) 247
Eco32I GATATC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 144
EcoO109I RGGNCCY 2 cut(s) 74, 148
EcoRV GATATC 1 cut(s) 60
FaeI CATG 4 cut(s) 28, 58, 130, 243
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 4 cut(s) 24, 54, 126, 239
FblI GTMKAC 1 cut(s) 120
FokI GGATG 1 cut(s) 90
FspBI CTAG 1 cut(s) 269
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 4 cut(s) 28, 58, 130, 243
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 18, 55, 146
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 7, 28, 286
HpyF3I CTNAG 3 cut(s) 81, 144, 204
Hsp92II CATG 4 cut(s) 28, 58, 130, 243
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 2 cut(s) 84, 131
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 269
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 52
MluCI AATT 2 cut(s) 276, 292
MnlI CCTC 4 cut(s) 62, 153, 180, 234
MseI TTAA 2 cut(s) 246, 295
NdeII GATC 1 cut(s) 220
NlaIII CATG 4 cut(s) 28, 58, 130, 243
NspI RCATGY 1 cut(s) 28
PagI TCATGA 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
PspPI GGNCC 2 cut(s) 74, 148
PspPPI RGGWCCY 1 cut(s) 148
SaqAI TTAA 2 cut(s) 246, 295
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 2 cut(s) 74, 148
SetI ASST 4 cut(s) 12, 94, 145, 153
SfaNI GCATC 1 cut(s) 23
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 2 cut(s) 276, 292
SspMI CTAG 1 cut(s) 269
TaqI TCGA 1 cut(s) 47
TasI AATT 2 cut(s) 276, 292
Tru1I TTAA 2 cut(s) 246, 295
Tru9I TTAA 2 cut(s) 246, 295
TspDTI ATGAA 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 276
XceI RCATGY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.