Rmu_sc0040739.1_g000001

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040739.1
OG0000634
Physical Location & Seq
Forward (+)
1 .. 1799
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040739.1_g000001.1.cds

Sequence Viewer

Length: 588 bp
gttgaaggtgtggatggaaagaataagcagtggaagagggttcaagtgaagttggaagaccacgtgcatgtccccattttcccctctggaatgtcacttgaatcatacgatacttactttgatgagtatatgacgaagatagcatcagaaacattcccacaaagcaggccattgtgggaacttcatcttttcaagtacccaacaagtcatgcagctggacaaataatattcaagatccaccatgcccttggcgatggctactctctcatgggcgctcttctctcttgtctccaaaatgctcagaatccttctcttcccctgacatttccttcactaaagggtgcaaagaatgaaactagtagtcgatctcgtgtatttaagtttgtgcctaagatattttctgctgttatcaacggtgcatgggatttcggttggagcattttgaagggcacttgggttgaagatgatcgaacaccaataaggtcaggcgttgttggagttgagtttcggcctgtgtccacgtcaaccttgatgctgtctattgaggaaatcaaacttatcaagaacaaccttggggtggtaagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

195

Amino Acids

21.87

Weight (kDa)

8.63

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 229
AcvI CACGTG 1 cut(s) 64
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 577
AgsI TTSAA 7 cut(s) 5, 44, 101, 193, 232, 445, 461
AhlI ACTAGT 1 cut(s) 356
AjiI CACGTC 1 cut(s) 522
AluBI AGCT 2 cut(s) 215, 585
AluI AGCT 2 cut(s) 215, 585
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 229
AoxI GGCC 2 cut(s) 167, 509
ApeKI GCWGC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 452
BauI CACGAG 1 cut(s) 369
BbrPI CACGTG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 8, 248
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 2 cut(s) 357, 586
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 522
BmsI GCATC 2 cut(s) 152, 522
BpiI GAAGAC 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 247, 571
Bsc4I CCNNNNNNNGG 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 247, 571
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 577
BseMII CTCAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 1 cut(s) 224
BshFI GGCC 2 cut(s) 169, 511
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 577
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 2 cut(s) 169, 511
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 3 cut(s) 234, 365, 466
BspANI GGCC 2 cut(s) 169, 511
BspCNI CTCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 229
BspQI GCTCTTC 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 247, 571
BssMI GATC 3 cut(s) 234, 365, 466
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 2 cut(s) 247, 571
Bst2BI CACGAG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 3 cut(s) 29, 282, 318
BstBAI YACGTR 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 300, 390
BstF5I GGATG 1 cut(s) 19
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 3 cut(s) 237, 368, 469
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 3 cut(s) 234, 365, 466
BstNSI RCATGY 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 2 cut(s) 169, 511
BtgZI GCGATG 1 cut(s) 267
BtrI CACGTC 1 cut(s) 522
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 167
CfoI GCGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 196
CviAII CATG 5 cut(s) 68, 209, 242, 268, 420
CviJI RGCY 5 cut(s) 169, 215, 258, 511, 585
CviKI_1 RGCY 5 cut(s) 169, 215, 258, 511, 585
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 300, 390
DpnI GATC 3 cut(s) 236, 367, 468
DpnII GATC 3 cut(s) 234, 365, 466
Eam1104I CTCTTC 3 cut(s) 29, 282, 318
EarI CTCTTC 3 cut(s) 29, 282, 318
Eco130I CCWWGG 2 cut(s) 247, 571
Eco72I CACGTG 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 247, 571
ErhI CCWWGG 2 cut(s) 247, 571
FaeI CATG 5 cut(s) 71, 212, 245, 271, 423
FaiI YATR 8 cut(s) 69, 106, 129, 131, 210, 243, 269, 421
FaqI GGGAC 1 cut(s) 56
FatI CATG 5 cut(s) 67, 208, 241, 267, 419
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 357, 586
GlaI GCGC 1 cut(s) 274
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 2 cut(s) 169, 511
HhaI GCGC 1 cut(s) 275
Hin1II CATG 5 cut(s) 71, 212, 245, 271, 423
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 2 cut(s) 101, 304
Hpy166II GTNNAC 2 cut(s) 519, 525
Hpy188I TCNGA 2 cut(s) 148, 303
Hpy188III TCNNGA 3 cut(s) 87, 232, 562
Hpy8I GTNNAC 2 cut(s) 519, 525
HpyAV CCTTC 3 cut(s) 318, 339, 439
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4IV ACGT 2 cut(s) 63, 521
HpyCH4V TGCA 4 cut(s) 67, 212, 344, 419
HpyF3I CTNAG 2 cut(s) 300, 390
HpySE526I ACGT 2 cut(s) 63, 521
Hsp92II CATG 5 cut(s) 71, 212, 245, 271, 423
HspAI GCGC 1 cut(s) 273
Kzo9I GATC 3 cut(s) 234, 365, 466
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 435
LpnPI CCDG 6 cut(s) 72, 151, 201, 332, 471, 525
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 2 cut(s) 152, 522
MaeI CTAG 2 cut(s) 357, 586
MaeII ACGT 2 cut(s) 63, 521
MaeIII GTNAC 1 cut(s) 93
MalI GATC 3 cut(s) 236, 367, 468
MboI GATC 3 cut(s) 234, 365, 466
MboII GAAGA 6 cut(s) 46, 68, 148, 269, 305, 473
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 452
MmeI TCCRAC 3 cut(s) 33, 413, 475
MnlI CCTC 3 cut(s) 30, 94, 538
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 215
NdeII GATC 3 cut(s) 234, 365, 466
NlaIII CATG 5 cut(s) 71, 212, 245, 271, 423
NmuCI GTSAC 1 cut(s) 93
NspI RCATGY 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 101, 304
PkrI GCNGC 1 cut(s) 214
PmaCI CACGTG 1 cut(s) 64
PmlI CACGTG 1 cut(s) 64
Ppu21I YACGTR 1 cut(s) 64
PspCI CACGTG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 3 cut(s) 234, 365, 466
SduI GDGCHC 1 cut(s) 452
SetI ASST 8 cut(s) 10, 66, 217, 485, 524, 530, 573, 587
SfaNI GCATC 2 cut(s) 152, 522
SmiMI CAYNNNNRTG 1 cut(s) 66
SpeI ACTAGT 1 cut(s) 356
SspI AATATT 1 cut(s) 228
SspMI CTAG 2 cut(s) 357, 586
StyI CCWWGG 2 cut(s) 247, 571
TaaI ACNGT 1 cut(s) 416
TaiI ACGT 2 cut(s) 66, 524
TaqI TCGA 2 cut(s) 364, 469
TfiI GAWTC 2 cut(s) 101, 304
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 35
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 173, 366
TspRI CASTG 1 cut(s) 35
XceI RCATGY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XspI CTAG 2 cut(s) 357, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.