Rh1BG192200

Wax ester synthase-like Acyl-CoA acyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000634
Physical Location & Seq
Forward (+)
30815966 .. 30818783
2818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG192200.1

Sequence Viewer

Length: 198 bp
ATGGCTTTGGCTGATAACCCCATTAAAGGAATCTACTTTATGGTGGTCGTTTCACCTCAGAGTCTTACTATATCAGCAATAAGTTATATGGGAAAGCTAAGGATTGCCATAGGAGCTGAAAAAGGTTTCATAGATTCCAACAAATTGCAGGCATGCATGGAAGATGCATTTCGGGTGATATCTGAAGCTGCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

65

Amino Acids

7.01

Weight (kDa)

6.06

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_C PF06974 1 - 60 2.6e-14 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 26
AluBI AGCT 3 cut(s) 97, 116, 188
AluI AGCT 3 cut(s) 97, 116, 188
ApeKI GCWGC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 45, 187
BbvI GCAGC 1 cut(s) 175
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmsI GCATC 1 cut(s) 154
Bpu10I CCTNAGC 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 150, 154
BstDEI CTNAG 2 cut(s) 57, 98
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 150, 154
CviAII CATG 2 cut(s) 153, 157
CviJI RGCY 5 cut(s) 5, 11, 97, 116, 188
CviKI_1 RGCY 5 cut(s) 5, 11, 97, 116, 188
DdeI CTNAG 2 cut(s) 57, 98
Eco32I GATATC 1 cut(s) 180
EcoRV GATATC 1 cut(s) 180
EcoT22I ATGCAT 2 cut(s) 158, 169
FaeI CATG 2 cut(s) 156, 160
FaiI YATR 8 cut(s) 41, 71, 87, 89, 110, 131, 154, 158
FatI CATG 2 cut(s) 152, 156
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
Hin1II CATG 2 cut(s) 156, 160
HinfI GANTC 3 cut(s) 30, 61, 134
HphI GGTGA 2 cut(s) 45, 187
Hpy188I TCNGA 2 cut(s) 60, 184
HpyCH4V TGCA 3 cut(s) 148, 156, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 57, 98
Hsp92II CATG 2 cut(s) 156, 160
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 1 cut(s) 134
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 173
MluCI AATT 2 cut(s) 143, 193
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 1 cut(s) 66
Mph1103I ATGCAT 2 cut(s) 158, 169
MseI TTAA 2 cut(s) 24, 196
MwoI GCNNNNNNNGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 156, 160
NsiI ATGCAT 2 cut(s) 158, 169
NspI RCATGY 1 cut(s) 156
PaeI GCATGC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 30, 134
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 24, 196
SatI GCNGC 1 cut(s) 189
SchI GAGTC 1 cut(s) 70
SetI ASST 5 cut(s) 58, 99, 118, 127, 190
SfaNI GCATC 1 cut(s) 154
SgeI CNNG 4 cut(s) 161, 165, 169, 185
SphI GCATGC 1 cut(s) 156
Sse9I AATT 2 cut(s) 143, 193
TasI AATT 2 cut(s) 143, 193
TfiI GAWTC 2 cut(s) 30, 134
Tru1I TTAA 2 cut(s) 24, 196
Tru9I TTAA 2 cut(s) 24, 196
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 118
XceI RCATGY 1 cut(s) 156
Zsp2I ATGCAT 2 cut(s) 158, 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.