Rorug05G0294000

Wax ester synthase-like Acyl-CoA acyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000634
Physical Location & Seq
Forward (+)
33929622 .. 33931213
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0294000.1

Sequence Viewer

Length: 405 bp
ATGAGAAGTGGGTGTGAGGCAGCGACGGATCTGGTTTCTGGTTGTTGGCGGTGCACCTTTGTCGGCATCTCTTCGAAGGCACTTCTGGTTTTTGCAGCAGGTCGGGCTTGTTTAGGCTGCGAGGCTATCTTCCAGATCGGACCTAGGTCCCTCGAGGTGACGGGGATGGTTGAAGATCAAGGTCGCCTGCCGGAATGGCAATGCGGCTTGCTTGCTTGGTGTGGTAGCAGTGCCTCCGGCAAGCTTCCTAGGGTTCCGGTGATCGACGGTCTGAGTTGCAGATTGAGGGCAGTGGGTGTGGGTTGGGCTTCTGGTTTCAGTCCATTCTCCCTCCTCTCTCTTGTTTGGGCCAGAGGTTGGGTCGGGGCTCTTGTTGGGCTTGTTGTGGGCTGGACTTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

134

Amino Acids

14.06

Weight (kDa)

8.51

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 357
AciI CCGC 2 cut(s) 49, 204
AclWI GGATC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw21I GWGCWC 1 cut(s) 56
Alw44I GTGCAC 1 cut(s) 52
AlwI GGATC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 348
ApaLI GTGCAC 1 cut(s) 52
ApeKI GCWGC 3 cut(s) 20, 95, 117
AspA2I CCTAGG 2 cut(s) 143, 248
AspS9I GGNCC 3 cut(s) 140, 147, 348
AsuHPI GGTGA 2 cut(s) 169, 271
AsuII TTCGAA 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 2 cut(s) 140, 147
AvrII CCTAGG 2 cut(s) 143, 248
BaeGI GKGCMC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 370
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 3 cut(s) 32, 104, 107
BccI CCATC 1 cut(s) 160
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BfaI CTAG 2 cut(s) 144, 249
BfuAI ACCTGC 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 196
BisI GCNGC 4 cut(s) 21, 96, 118, 205
BlnI CCTAGG 2 cut(s) 143, 248
BlsI GCNGC 4 cut(s) 22, 97, 119, 206
Bme18I GGWCC 2 cut(s) 140, 147
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 140, 147, 348
BmiI GGNNCC 2 cut(s) 149, 255
BmsI GCATC 1 cut(s) 75
BoxI GACNNNNGTC 1 cut(s) 145
Bpu14I TTCGAA 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 143, 248
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 143, 248
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 3 cut(s) 32, 104, 107
BshFI GGCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 3 cut(s) 191, 237, 257
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 56, 370
Bsp143I GATC 4 cut(s) 28, 135, 175, 261
BspACI CCGC 2 cut(s) 49, 204
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 149, 255
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 143, 248
BssMI GATC 4 cut(s) 28, 135, 175, 261
BssT1I CCWWGG 2 cut(s) 143, 248
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 4 cut(s) 188, 209, 213, 242
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 4 cut(s) 31, 138, 178, 264
BstMBI GATC 4 cut(s) 28, 135, 175, 261
BstMWI GCNNNNNNNGC 2 cut(s) 104, 196
BstPAI GACNNNNGTC 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 56
BstV1I GCAGC 3 cut(s) 32, 104, 107
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 171
BtsI GCAGTG 2 cut(s) 235, 297
BtsIMutI CAGTG 2 cut(s) 235, 297
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 4 cut(s) 188, 209, 213, 242
Cfr13I GGNCC 3 cut(s) 140, 147, 348
DdeI CTNAG 1 cut(s) 272
DpnI GATC 4 cut(s) 30, 137, 177, 263
DpnII GATC 4 cut(s) 28, 135, 175, 261
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 143, 248
Eco24I GRGCYC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 140, 147
Eco88I CYCGRG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 143, 248
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 2 cut(s) 143, 248
FaiI YATR 2 cut(s) 401, 403
FaqI GGGAC 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 21, 96, 118, 205
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 4 cut(s) 21, 96, 118, 205
FspBI CTAG 2 cut(s) 144, 249
GluI GCNGC 4 cut(s) 21, 96, 118, 205
HaeIII GGCC 1 cut(s) 350
HapII CCGG 3 cut(s) 191, 237, 257
HindIII AAGCTT 1 cut(s) 242
HpaII CCGG 3 cut(s) 191, 237, 257
HphI GGTGA 2 cut(s) 169, 271
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 2 cut(s) 140, 273
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 2 cut(s) 28, 269
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 54, 95, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 196
HpyF3I CTNAG 1 cut(s) 272
Kzo9I GATC 4 cut(s) 28, 135, 175, 261
Lsp1109I GCAGC 3 cut(s) 32, 104, 107
LweI GCATC 1 cut(s) 75
MaeI CTAG 2 cut(s) 144, 249
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 30, 137, 177, 263
MboI GATC 4 cut(s) 28, 135, 175, 261
MboII GAAGA 3 cut(s) 63, 121, 185
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 56, 370
MnlI CCTC 9 cut(s) 10, 115, 148, 161, 244, 279, 341, 344, 347
MspI CCGG 3 cut(s) 191, 237, 257
MwoI GCNNNNNNNGC 2 cut(s) 104, 196
NdeII GATC 4 cut(s) 28, 135, 175, 261
NlaIV GGNNCC 2 cut(s) 149, 255
NmuCI GTSAC 1 cut(s) 157
NspV TTCGAA 1 cut(s) 74
PaeR7I CTCGAG 1 cut(s) 152
PflMI CCANNNNNTGG 1 cut(s) 357
PkrI GCNGC 4 cut(s) 22, 97, 119, 206
PpuMI RGGWCCY 1 cut(s) 147
PshAI GACNNNNGTC 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 149, 255
PspPI GGNCC 3 cut(s) 140, 147, 348
PspPPI RGGWCCY 1 cut(s) 147
PspXI VCTCGAGB 1 cut(s) 152
PsuI RGATCY 1 cut(s) 28
SatI GCNGC 4 cut(s) 21, 96, 118, 205
Sau3AI GATC 4 cut(s) 28, 135, 175, 261
Sau96I GGNCC 3 cut(s) 140, 147, 348
SduI GDGCHC 2 cut(s) 56, 370
SetI ASST 8 cut(s) 59, 103, 145, 149, 159, 184, 246, 358
SfaNI GCATC 1 cut(s) 75
Sfr274I CTCGAG 1 cut(s) 152
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 2 cut(s) 140, 147
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SsiI CCGC 2 cut(s) 49, 204
SspMI CTAG 2 cut(s) 144, 249
StyI CCWWGG 2 cut(s) 143, 248
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 3 cut(s) 74, 153, 264
TauI GCSGC 1 cut(s) 207
TscAI CASTG 2 cut(s) 235, 297
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 3 cut(s) 20, 95, 117
Tsp45I GTSAC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 2 cut(s) 235, 297
Van91I CCANNNNNTGG 1 cut(s) 357
VneI GTGCAC 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 140, 147
XhoI CTCGAG 1 cut(s) 152
XmaJI CCTAGG 2 cut(s) 143, 248
XspI CTAG 2 cut(s) 144, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.