RLG00000034753

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000634
Physical Location & Seq
Reverse (-)
53727488 .. 53728567
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034753

Sequence Viewer

Length: 717 bp
ATGGTTGAAGGTGTGGATGAAAAGAATAAGCAGTGGAAGAGGGTTGAAGTGAAGCTGGAAGACCATGTGCATGTCCCCATTTTCCCCTTTGGAATGTCACTTGAATCATACGATACATACTTTGATGAGTATATAATGAAGATAGCATCAAAAACATTCCCACAAAGCAGGCCATTGTGGGAACTTCATCTTTTCAAGTACCCAACAAGTCATGCAGCTGGACATATAATATTCAAGATCCACCATGCCCTTGGCGATGGCTACTGTCTCATGGGTGCTCTTCTCTCTTGTCTCCAAAATGGTGCAAAGAATGAAACTAATAGTCGATATCGTGTGTTTGAGTTTGTGCCTAAGATATTTTCTGCCGTTATCAACGGTGCATGGGATTTATGTTGGAGCATTTTGAAGGGCACTTGGGTTAAAGATGATCGAACACCAATTAGGTCTAGTGTTGATGGAGTTGAGTTTCAACCTCTGTCCATGTCGACCTTGATGCTGCCTATTGAGGAAATTAAACATATCAAGAACAAGCTTGGAGTGACGATAAATGATGTGATTTCAATTACAATCTTTCTGGGCCTCCGAATGTACATTCAAGAGATGAATAGTGAAAAATCAAGTAGCCAGAATTGCACGGCATTGGTGTTGCTGAATAGTAGACTTGCTGCGGGTTACAAGTCAGTGCAGGAGATGTTGATAGAAACAAACAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

239

Amino Acids

27.17

Weight (kDa)

7.09

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 485, 658
AciI CCGC 1 cut(s) 668
AclWI GGATC 1 cut(s) 232
AfaI GTAC 2 cut(s) 200, 590
AgsI TTSAA 9 cut(s) 8, 47, 104, 196, 235, 406, 470, 561, 596
AluBI AGCT 3 cut(s) 55, 218, 532
AluI AGCT 3 cut(s) 55, 218, 532
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 2 cut(s) 272, 296
AlwI GGATC 1 cut(s) 232
AoxI GGCC 2 cut(s) 170, 577
ApeKI GCWGC 3 cut(s) 215, 496, 665
AspS9I GGNCC 1 cut(s) 577
BaeGI GKGCMC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 3 cut(s) 227, 483, 652
BccI CCATC 2 cut(s) 251, 449
BceAI ACGGC 2 cut(s) 350, 651
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BcoDI GTCTC 2 cut(s) 272, 296
BfaI CTAG 1 cut(s) 447
BisI GCNGC 3 cut(s) 216, 497, 666
BlsI GCNGC 3 cut(s) 217, 498, 667
BmgT120I GGNCC 1 cut(s) 577
BmsI GCATC 2 cut(s) 155, 483
BpiI GAAGAC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 3 cut(s) 227, 483, 652
BsgI GTGCAG 1 cut(s) 704
BshFI GGCC 2 cut(s) 172, 579
BsiHKAI GWGCWC 1 cut(s) 280
BslFI GGGAC 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 272, 296
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 2 cut(s) 172, 579
Bsp1286I GDGCHC 2 cut(s) 280, 413
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 2 cut(s) 237, 427
BspACI CCGC 1 cut(s) 668
BspANI GGCC 2 cut(s) 172, 579
BspPI GGATC 1 cut(s) 232
BspQI GCTCTTC 1 cut(s) 285
BsrGI TGTACA 1 cut(s) 588
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 237, 427
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 266, 377
Bst6I CTCTTC 2 cut(s) 32, 285
BstAUI TGTACA 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 240, 430
BstMAI GTCTC 2 cut(s) 272, 296
BstMBI GATC 2 cut(s) 237, 427
BstMWI GCNNNNNNNGC 1 cut(s) 630
BstNSI RCATGY 1 cut(s) 74
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 3 cut(s) 227, 483, 652
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 2 cut(s) 172, 579
BtgZI GCGATG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 38, 687
Cac8I GCNNGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 577
Csp6I GTAC 2 cut(s) 199, 589
CviAII CATG 7 cut(s) 65, 71, 212, 245, 271, 381, 481
CviJI RGCY 7 cut(s) 55, 172, 218, 261, 532, 579, 624
CviKI_1 RGCY 7 cut(s) 55, 172, 218, 261, 532, 579, 624
CviQI GTAC 2 cut(s) 199, 589
DdeI CTNAG 1 cut(s) 351
DpnI GATC 2 cut(s) 239, 429
DpnII GATC 2 cut(s) 237, 427
Eam1104I CTCTTC 2 cut(s) 32, 285
EarI CTCTTC 2 cut(s) 32, 285
Eco130I CCWWGG 1 cut(s) 250
Eco32I GATATC 1 cut(s) 329
EcoRV GATATC 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 7 cut(s) 68, 74, 215, 248, 274, 384, 484
FaqI GGGAC 1 cut(s) 59
FatI CATG 7 cut(s) 64, 70, 211, 244, 270, 380, 480
FauI CCCGC 1 cut(s) 661
FblI GTMKAC 2 cut(s) 485, 658
Fnu4HI GCNGC 3 cut(s) 216, 497, 666
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 216, 497, 666
FspBI CTAG 1 cut(s) 447
GluI GCNGC 3 cut(s) 216, 497, 666
HaeIII GGCC 2 cut(s) 172, 579
Hin1II CATG 7 cut(s) 68, 74, 215, 248, 274, 384, 484
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 486, 659
Hpy188I TCNGA 1 cut(s) 584
Hpy188III TCNNGA 4 cut(s) 235, 523, 596, 714
Hpy8I GTNNAC 2 cut(s) 486, 659
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 2 cut(s) 266, 377
HpyCH4V TGCA 6 cut(s) 70, 215, 305, 380, 633, 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 630
HpyF3I CTNAG 1 cut(s) 351
Hsp92II CATG 7 cut(s) 68, 74, 215, 248, 274, 384, 484
Kzo9I GATC 2 cut(s) 237, 427
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 6 cut(s) 41, 154, 204, 560, 638, 671
Lsp1109I GCAGC 3 cut(s) 227, 483, 652
LweI GCATC 2 cut(s) 155, 483
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 3 cut(s) 96, 538, 671
MalI GATC 2 cut(s) 239, 429
MboI GATC 2 cut(s) 237, 427
MboII GAAGA 4 cut(s) 49, 71, 151, 272
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 280, 413
MluCI AATT 4 cut(s) 438, 510, 561, 628
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 4 cut(s) 33, 483, 499, 590
MseI TTAA 2 cut(s) 420, 513
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 630
NdeII GATC 2 cut(s) 237, 427
NlaIII CATG 7 cut(s) 68, 74, 215, 248, 274, 384, 484
NmuCI GTSAC 2 cut(s) 96, 538
NspI RCATGY 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 217, 498, 667
PspPI GGNCC 1 cut(s) 577
PsuI RGATCY 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 2 cut(s) 200, 590
RsaNI GTAC 2 cut(s) 199, 589
RseI CAYNNNNRTG 1 cut(s) 69
SalI GTCGAC 1 cut(s) 484
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 420, 513
SatI GCNGC 3 cut(s) 216, 497, 666
Sau3AI GATC 2 cut(s) 237, 427
Sau96I GGNCC 1 cut(s) 577
SduI GDGCHC 2 cut(s) 280, 413
SetI ASST 7 cut(s) 13, 57, 220, 446, 475, 491, 534
SfaNI GCATC 2 cut(s) 155, 483
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 4 cut(s) 438, 510, 561, 628
SsiI CCGC 1 cut(s) 668
SspI AATATT 1 cut(s) 231
SspMI CTAG 1 cut(s) 447
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 266, 377
TaqI TCGA 3 cut(s) 325, 430, 485
TasI AATT 4 cut(s) 438, 510, 561, 628
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 420, 513
Tru9I TTAA 2 cut(s) 420, 513
TscAI CASTG 2 cut(s) 38, 687
TseFI GTSAC 2 cut(s) 96, 538
TseI GCWGC 3 cut(s) 215, 496, 665
Tsp45I GTSAC 2 cut(s) 96, 538
TspDTI ATGAA 5 cut(s) 33, 152, 176, 327, 617
TspRI CASTG 2 cut(s) 38, 687
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmiI GTMKAC 2 cut(s) 485, 658
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.