Rmu_sc0011917.1_g000004

Wax ester synthase-like Acyl-CoA acyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011917.1
OG0000634
Physical Location & Seq
Forward (+)
18738 .. 20307
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011917.1_g000004.1.cds

Sequence Viewer

Length: 1047 bp
atggagtttggagaagaaggactactaatgaacgattctcaaactttttcacttcttaaaaatgtgttcctcccgatcaatccacgcttctcttccatcatggttgaaggtgtggatgaaaagaataagcagtggaagagggttcaagtgaagttggaagaccatgtgcatgtccccattttcccctctggaatgtcacttgaatcatacgatacttactttgatgagtatataacgaagatagcatcagaaacattaccacaaagcaggccattgtgggaacttcatattttcaagtacccaacaagtcatgcagctggacaaataatattcaagatccaccatgcccttggcgatggctactctctcatgggcgctcttctctcttgtctccaaaatgctcacaatccttctcttcccctgacatttccttcactaaagggcgcaaagaatgaaactagtagtcgatctcgtgtatttgagtttgtacctaagatattttctgctgttatcaacggtgcatgggatttcggttggagcattttgaagggcacttgggttgaagatgatcgaacaccaataaggtcaggcgttgttggagttgagtttcggcctgtgtccacgtcaaccttgatgctgtctattgaggaaatcaaacttatcaagaacaagcttgggttgacgataaatgatgttattgcgggaacaatctttctaggcacccgaatgtacatgcaacagatgaatagtgaaaaatcaagtagccagaattgcacggcactcgtgttgctgaatactagacttgttgcgaattacaagtcggtgcaggagatgttgatggaaccaagcgagtcttcttggggcaaccaatttgtgttcttgcatgtcccggtgcccaagtcgagtgaagtttccaagccattggattttgtatgggaagcacataaaatagtcaagagacatagaagctcttcagcttggtaccttactattaggctctgggacattttgaagaaatttagaggccctgaggtaactaattattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

348

Amino Acids

39.6

Weight (kDa)

8.36

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 981
AccB1I GGYRCC 3 cut(s) 719, 892, 981
AciI CCGC 1 cut(s) 701
AclWI GGATC 1 cut(s) 331
AcsI RAATTY 1 cut(s) 1016
AcuI CTGAAG 1 cut(s) 957
AfaI GTAC 4 cut(s) 299, 489, 731, 983
AgsI TTSAA 8 cut(s) 107, 146, 203, 295, 334, 547, 563, 1012
AhlI ACTAGT 1 cut(s) 458
AjiI CACGTC 1 cut(s) 624
AjuI GAANNNNNNNTTGG 2 cut(s) 838, 870
AluBI AGCT 4 cut(s) 317, 673, 969, 977
AluI AGCT 4 cut(s) 317, 673, 969, 977
Alw26I GTCTC 2 cut(s) 395, 952
AlwI GGATC 1 cut(s) 331
AoxI GGCC 3 cut(s) 269, 611, 1024
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 1016
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
Asp700I GAANNNNTTC 1 cut(s) 970
Asp718I GGTACC 1 cut(s) 981
AspLEI GCGC 2 cut(s) 377, 446
AspS9I GGNCC 1 cut(s) 1025
AsuC2I CCSGG 1 cut(s) 890
AxyI CCTNAGG 1 cut(s) 1029
BaeGI GKGCMC 2 cut(s) 554, 897
BanI GGYRCC 3 cut(s) 719, 892, 981
BarI GAAGNNNNNNTAC 1 cut(s) 38
BauI CACGAG 2 cut(s) 471, 782
BbsI GAAGAC 2 cut(s) 165, 846
BbvI GCAGC 1 cut(s) 326
BccI CCATC 3 cut(s) 104, 350, 832
BceAI ACGGC 1 cut(s) 792
BcgI CGANNNNNNTGC 2 cut(s) 763, 797
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 2 cut(s) 395, 952
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 3 cut(s) 459, 716, 798
BfoI RGCGCY 1 cut(s) 378
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 890
BmgBI CACGTC 1 cut(s) 624
BmgT120I GGNCC 1 cut(s) 1025
BmiI GGNNCC 4 cut(s) 721, 843, 894, 983
BmrFI CCNGG 1 cut(s) 890
BmsI GCATC 2 cut(s) 254, 624
BpiI GAAGAC 2 cut(s) 165, 846
BpuMI CCSGG 1 cut(s) 890
BsaJI CCNNGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 1029
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 1020
BseSI GKGCMC 2 cut(s) 554, 897
BseXI GCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 845
BshFI GGCC 3 cut(s) 271, 613, 1026
BshNI GGYRCC 3 cut(s) 719, 892, 981
BsiSI CCGG 1 cut(s) 890
BslFI GGGAC 3 cut(s) 158, 872, 1016
BsmAI GTCTC 2 cut(s) 395, 952
BsmFI GGGAC 3 cut(s) 158, 872, 1016
BsnI GGCC 3 cut(s) 271, 613, 1026
Bsp1286I GDGCHC 2 cut(s) 554, 897
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 4 cut(s) 75, 336, 467, 568
BspACI CCGC 1 cut(s) 701
BspANI GGCC 3 cut(s) 271, 613, 1026
BspCNI CTCAG 1 cut(s) 1021
BspLI GGNNCC 4 cut(s) 721, 843, 894, 983
BspPI GGATC 1 cut(s) 331
BspQI GCTCTTC 2 cut(s) 384, 976
BspT107I GGYRCC 3 cut(s) 719, 892, 981
BsrGI TGTACA 1 cut(s) 729
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 4 cut(s) 75, 336, 467, 568
BssSI CACGAG 2 cut(s) 471, 782
BssT1I CCWWGG 1 cut(s) 349
Bst2BI CACGAG 2 cut(s) 471, 782
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 5 cut(s) 97, 131, 384, 420, 976
BstAUI TGTACA 1 cut(s) 729
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 492, 1029
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 2 cut(s) 377, 446
BstKTI GATC 4 cut(s) 78, 339, 470, 571
BstMAI GTCTC 2 cut(s) 395, 952
BstMBI GATC 4 cut(s) 75, 336, 467, 568
BstMWI GCNNNNNNNGC 1 cut(s) 771
BstNSI RCATGY 3 cut(s) 173, 736, 887
BstSCI CCNGG 1 cut(s) 888
BstSLI GKGCMC 2 cut(s) 554, 897
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 2 cut(s) 165, 846
BstX2I RGATCY 1 cut(s) 336
BstXI CCANNNNNNTGG 2 cut(s) 350, 922
BstYI RGATCY 1 cut(s) 336
Bsu36I CCTNAGG 1 cut(s) 1029
BsuRI GGCC 3 cut(s) 271, 613, 1026
BtgZI GCGATG 1 cut(s) 369
BtrI CACGTC 1 cut(s) 624
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 269
CfoI GCGC 2 cut(s) 377, 446
Cfr13I GGNCC 1 cut(s) 1025
Csp6I GTAC 4 cut(s) 298, 488, 730, 982
CviAII CATG 9 cut(s) 100, 164, 170, 311, 344, 370, 522, 733, 884
CviQI GTAC 4 cut(s) 298, 488, 730, 982
DdeI CTNAG 2 cut(s) 492, 1029
DpnI GATC 4 cut(s) 77, 338, 469, 570
DpnII GATC 4 cut(s) 75, 336, 467, 568
Eam1104I CTCTTC 5 cut(s) 97, 131, 384, 420, 976
EarI CTCTTC 5 cut(s) 97, 131, 384, 420, 976
Eco130I CCWWGG 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 957
Eco81I CCTNAGG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 1025
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 9 cut(s) 103, 167, 173, 314, 347, 373, 525, 736, 887
FalI AAGNNNNNCTT 2 cut(s) 838, 870
FaqI GGGAC 3 cut(s) 158, 872, 1016
FatI CATG 9 cut(s) 99, 163, 169, 310, 343, 369, 521, 732, 883
FauI CCCGC 1 cut(s) 694
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 3 cut(s) 459, 716, 798
GlaI GCGC 2 cut(s) 376, 445
GluI GCNGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 3 cut(s) 271, 613, 1026
HapII CCGG 1 cut(s) 890
HhaI GCGC 2 cut(s) 377, 446
Hin1II CATG 9 cut(s) 103, 167, 173, 314, 347, 373, 525, 736, 887
Hin6I GCGC 2 cut(s) 375, 444
HinP1I GCGC 2 cut(s) 375, 444
HincII GTYRAC 2 cut(s) 627, 681
HindII GTYRAC 2 cut(s) 627, 681
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 3 cut(s) 35, 203, 851
HpaII CCGG 1 cut(s) 890
Hpy166II GTNNAC 3 cut(s) 621, 627, 681
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 5 cut(s) 73, 189, 334, 664, 955
Hpy8I GTNNAC 3 cut(s) 621, 627, 681
HpyAV CCTTC 5 cut(s) 11, 101, 420, 441, 541
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 1 cut(s) 623
HpyCH4V TGCA 7 cut(s) 169, 314, 521, 736, 774, 826, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 771
HpyF3I CTNAG 2 cut(s) 492, 1029
HpySE526I ACGT 1 cut(s) 623
Hsp92II CATG 9 cut(s) 103, 167, 173, 314, 347, 373, 525, 736, 887
HspAI GCGC 2 cut(s) 375, 444
KpnI GGTACC 1 cut(s) 985
Kzo9I GATC 4 cut(s) 75, 336, 467, 568
LguI GCTCTTC 2 cut(s) 384, 976
LmnI GCTCC 1 cut(s) 537
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 2 cut(s) 254, 624
MaeI CTAG 3 cut(s) 459, 716, 798
MaeII ACGT 1 cut(s) 623
MaeIII GTNAC 2 cut(s) 195, 1033
MalI GATC 4 cut(s) 77, 338, 469, 570
MboI GATC 4 cut(s) 75, 336, 467, 568
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 2 cut(s) 554, 897
MluCI AATT 5 cut(s) 769, 811, 869, 1016, 1039
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 3 cut(s) 135, 515, 577
MnlI CCTC 6 cut(s) 80, 132, 196, 640, 1016, 1024
MroXI GAANNNNTTC 1 cut(s) 970
MseI TTAA 2 cut(s) 57, 1045
MslI CAYNNNNRTG 2 cut(s) 168, 725
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 890
MspR9I CCNGG 1 cut(s) 890
MwoI GCNNNNNNNGC 1 cut(s) 771
NciI CCSGG 1 cut(s) 890
NdeII GATC 4 cut(s) 75, 336, 467, 568
NlaIII CATG 9 cut(s) 103, 167, 173, 314, 347, 373, 525, 736, 887
NlaIV GGNNCC 4 cut(s) 721, 843, 894, 983
NmuCI GTSAC 1 cut(s) 195
NspI RCATGY 3 cut(s) 173, 736, 887
PciSI GCTCTTC 2 cut(s) 384, 976
PdmI GAANNNNTTC 1 cut(s) 970
PfeI GAWTC 2 cut(s) 35, 203
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 859
PpsI GAGTC 1 cut(s) 859
PspN4I GGNNCC 4 cut(s) 721, 843, 894, 983
PspPI GGNCC 1 cut(s) 1025
PsuI RGATCY 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 4 cut(s) 299, 489, 731, 983
RsaNI GTAC 4 cut(s) 298, 488, 730, 982
RseI CAYNNNNRTG 2 cut(s) 168, 725
SapI GCTCTTC 2 cut(s) 384, 976
SaqAI TTAA 2 cut(s) 57, 1045
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 4 cut(s) 75, 336, 467, 568
Sau96I GGNCC 1 cut(s) 1025
SchI GAGTC 1 cut(s) 860
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 2 cut(s) 554, 897
SfaNI GCATC 2 cut(s) 254, 624
SmiMI CAYNNNNRTG 2 cut(s) 168, 725
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 5 cut(s) 769, 811, 869, 1016, 1039
SsiI CCGC 1 cut(s) 701
SspI AATATT 1 cut(s) 330
SspMI CTAG 3 cut(s) 459, 716, 798
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 1 cut(s) 626
TaqI TCGA 3 cut(s) 466, 571, 902
TasI AATT 5 cut(s) 769, 811, 869, 1016, 1039
TatI WGTACW 1 cut(s) 729
TfiI GAWTC 2 cut(s) 35, 203
Tru1I TTAA 2 cut(s) 57, 1045
Tru9I TTAA 2 cut(s) 57, 1045
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 5 cut(s) 44, 132, 275, 468, 758
TspRI CASTG 1 cut(s) 137
XapI RAATTY 1 cut(s) 1016
XceI RCATGY 3 cut(s) 173, 736, 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 970
XspI CTAG 3 cut(s) 459, 716, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.