Rw1G019350

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000634
Physical Location & Seq
Forward (+)
42378784 .. 42388730
9947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019350.1

Sequence Viewer

Length: 1377 bp
ATGGAGTCTGGAGAAGAAGGACTACTACTGGAGCCGGTGAGCCCTGGTGGTCAATTCTTCAACAGCACTGTCTTATCTCTTGCAATTATATCCGTTTTGGAATCACAAGTTCCAATCAAAGATTCTCAAACTTTTTCACTTCACAAAAATGTGTTCCTCCCGATCAATCCACGCTTCTCTTTCCATCATGTAACGCAGGTTGAAGGTGCGGATGAAAAGAATAATCAGTGGAAGAGGGTTCAAGTGAAGCTGGAAGACCATGTGTATGTCCCCATTTTCCCCTCTAGAATGTCATTTGAATCAGACGATACTTACTTTGATGATCTGAACCCCACGGATGTCAAATCCTGGTTCCGCCCCTGGTGGGAACTTCATCTTTTCAAGTACCCAACAAGTCATGCAGCTGGACAAATAATATTCAAGATCCACCATGGCCTTGGCGATGGCTACTCTCTTATGGGCGCTCATCTCTCTTGTCTCCAAAATGCTCACAATCCTTCTCTTCCCCTGACATTTCCTTCACTAAAGGGTGCAAAGAATGAAACTAGTAGTCTGTCTCGTGTGTTTGAGTTTGTGCCTAAGATACTTTCTGCCGTTATCAACGTTGCATGGGATTTCAGTTGGAGCATTTTGAAGGGCACTTGGGTTGAAGATGATCGAACACCAACAAGGTCCGGCGTTGTTGGAGTTGAGTTTCGGCCTGTGTCCATGTCGACCTTGATGCTGTCTATTGAAGAAATCAAAATTATTAAGAACAAGCTTGGGGTGACGATAAATGATGTTATTGCGGGAATAACCTTTCTGGGCACCCGAATGTACATACAACGGATGAATAGTGAAAAATCAAGTAGCCAGAATTGCACGGCACTCGTGTTGCTAAATACTAGACTTGCTGCGGGTTACAAGTCGGTGCAGGAGATGTTGATGGAACCAAGCAAGTCTTCTTGGGGCAACCGATTTGTGTTCTTGCATGTCTCGGTGCCCAAGTCGAGTGAAGTTTCCAAGCCATTGGATTTTGTATGGGAAGCACAGAAGATAGTCAAGAGACATAGAAGCTCTTCAGCTTGGTACCTTACTATTAGGCTCTGGGATATTTTGAAGAAATTTAGAGGCTCTAAGGTAGTGGCTGGATACATTTATAGCACACTCATGAACTCAAGCATGGCAATCACAAATATGATCGGGCCACTGGAACAAATGGCTTTAGCTGATCACCCCATTAAAGGAATCTACTTTATGGTGGTCGGTTCACCTCAGGAACAAAGACTAATAGTATGTTCCATGATAGTTTTACATTATACAAGCACTAACCGGAAGAAAAGCAACAACAACATAATGATTATTTTGGGAAGAAAAAAAAATCAAACTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

458

Amino Acids

51.84

Weight (kDa)

9.24

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_C PF06974 316 - 421 1e-22 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
Acc65I GGTACC 1 cut(s) 1068
AccB1I GGYRCC 3 cut(s) 806, 979, 1068
AccI GTMKAC 1 cut(s) 713
AciI CCGC 4 cut(s) 209, 355, 788, 896
AclI AACGTT 1 cut(s) 603
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 1 cut(s) 1103
AcuI CTGAAG 1 cut(s) 1044
AfaI GTAC 3 cut(s) 386, 818, 1070
AfiI CCNNNNNNNGG 2 cut(s) 364, 1223
AhlI ACTAGT 1 cut(s) 545
AjnI CCWGG 3 cut(s) 43, 347, 359
AjuI GAANNNNNNNTTGG 4 cut(s) 106, 138, 925, 957
AluBI AGCT 6 cut(s) 250, 404, 760, 1056, 1064, 1208
AluI AGCT 6 cut(s) 250, 404, 760, 1056, 1064, 1208
Alw26I GTCTC 4 cut(s) 482, 561, 979, 1039
AlwI GGATC 1 cut(s) 418
AoxI GGCC 3 cut(s) 433, 698, 1184
ApeKI GCWGC 2 cut(s) 401, 893
ApoI RAATTY 1 cut(s) 1103
Asp700I GAANNNNTTC 1 cut(s) 1057
Asp718I GGTACC 1 cut(s) 1068
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 2 cut(s) 672, 1184
AsuHPI GGTGA 4 cut(s) 49, 778, 1205, 1242
AvaII GGWCC 1 cut(s) 672
AxyI CCTNAGG 1 cut(s) 1254
BaeGI GKGCMC 3 cut(s) 641, 809, 984
BanI GGYRCC 3 cut(s) 806, 979, 1068
BanII GRGCYC 1 cut(s) 44
BarI GAAGNNNNNNTAC 3 cut(s) 9, 38, 41
BauI CACGAG 2 cut(s) 558, 869
BbsI GAAGAC 2 cut(s) 261, 933
BbvI GCAGC 2 cut(s) 413, 880
BccI CCATC 3 cut(s) 192, 437, 919
BceAI ACGGC 2 cut(s) 578, 879
BcgI CGANNNNNNTGC 4 cut(s) 703, 737, 850, 884
BciT130I CCWGG 3 cut(s) 45, 349, 361
BciVI GTATCC 1 cut(s) 1124
BclI TGATCA 1 cut(s) 1210
BcoDI GTCTC 4 cut(s) 482, 561, 979, 1039
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 3 cut(s) 285, 546, 885
BfoI RGCGCY 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 187
BfuI GTATCC 1 cut(s) 1124
BisI GCNGC 2 cut(s) 402, 894
BlsI GCNGC 2 cut(s) 403, 895
Bme1390I CCNGG 3 cut(s) 45, 349, 361
Bme18I GGWCC 1 cut(s) 672
BmgT120I GGNCC 2 cut(s) 672, 1184
BmiI GGNNCC 6 cut(s) 33, 353, 808, 930, 981, 1070
BmrFI CCNGG 3 cut(s) 45, 349, 361
BmsI GCATC 1 cut(s) 711
BpiI GAAGAC 2 cut(s) 261, 933
BpmI CTGGAG 2 cut(s) 30, 50
BpuEI CTTGAG 1 cut(s) 1141
BsaJI CCNNGG 5 cut(s) 43, 333, 359, 430, 436
BsaWI WCCGGW 1 cut(s) 1311
Bsc4I CCNNNNNNNGG 2 cut(s) 364, 1223
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 33, 1194
Bse21I CCTNAGG 1 cut(s) 1254
BseBI CCWGG 3 cut(s) 45, 349, 361
BseDI CCNNGG 5 cut(s) 43, 333, 359, 430, 436
BseGI GGATG 3 cut(s) 217, 343, 834
BseLI CCNNNNNNNGG 2 cut(s) 364, 1223
BseMII CTCAG 1 cut(s) 1268
BseNI ACTGG 2 cut(s) 33, 1194
BseSI GKGCMC 3 cut(s) 641, 809, 984
BseXI GCAGC 2 cut(s) 413, 880
BsgI GTGCAG 1 cut(s) 932
BshFI GGCC 3 cut(s) 435, 700, 1186
BshNI GGYRCC 3 cut(s) 806, 979, 1068
BsiSI CCGG 3 cut(s) 35, 675, 1312
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 364, 1223
BsmAI GTCTC 4 cut(s) 482, 561, 979, 1039
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 435, 700, 1186
Bsp1286I GDGCHC 4 cut(s) 44, 641, 809, 984
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 6 cut(s) 162, 322, 423, 655, 1179, 1210
Bsp19I CCATGG 1 cut(s) 430
BspACI CCGC 4 cut(s) 209, 355, 788, 896
BspANI GGCC 3 cut(s) 435, 700, 1186
BspCNI CTCAG 1 cut(s) 1267
BspHI TCATGA 1 cut(s) 1149
BspLI GGNNCC 6 cut(s) 33, 353, 808, 930, 981, 1070
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 1063
BspT107I GGYRCC 3 cut(s) 806, 979, 1068
BsrFI RCCGGY 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 2 cut(s) 33, 1194
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 5 cut(s) 43, 333, 359, 430, 436
BssMI GATC 6 cut(s) 162, 322, 423, 655, 1179, 1210
BssSI CACGAG 2 cut(s) 558, 869
BssT1I CCWWGG 2 cut(s) 430, 436
Bst2BI CACGAG 2 cut(s) 558, 869
Bst2UI CCWGG 3 cut(s) 45, 349, 361
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 3 cut(s) 227, 507, 1063
BstAUI TGTACA 1 cut(s) 816
BstDEI CTNAG 3 cut(s) 579, 1116, 1254
BstDSI CCRYGG 2 cut(s) 333, 430
BstF5I GGATG 3 cut(s) 217, 343, 834
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 6 cut(s) 165, 325, 426, 658, 1182, 1213
BstMAI GTCTC 4 cut(s) 482, 561, 979, 1039
BstMBI GATC 6 cut(s) 162, 322, 423, 655, 1179, 1210
BstMWI GCNNNNNNNGC 1 cut(s) 858
BstNI CCWGG 3 cut(s) 45, 349, 361
BstNSI RCATGY 1 cut(s) 974
BstSCI CCNGG 3 cut(s) 43, 347, 359
BstSLI GKGCMC 3 cut(s) 641, 809, 984
BstV1I GCAGC 2 cut(s) 413, 880
BstV2I GAAGAC 2 cut(s) 261, 933
BstX2I RGATCY 1 cut(s) 423
BstXI CCANNNNNNTGG 2 cut(s) 437, 1009
BstYI RGATCY 1 cut(s) 423
Bsu36I CCTNAGG 1 cut(s) 1254
BsuI GTATCC 1 cut(s) 1124
BsuRI GGCC 3 cut(s) 435, 700, 1186
BtgI CCRYGG 2 cut(s) 333, 430
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 3 cut(s) 217, 343, 834
BtsIMutI CAGTG 3 cut(s) 66, 233, 1187
BveI ACCTGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 1149
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 672, 1184
Csp6I GTAC 3 cut(s) 385, 817, 1069
CviQI GTAC 3 cut(s) 385, 817, 1069
DdeI CTNAG 3 cut(s) 579, 1116, 1254
DpnI GATC 6 cut(s) 164, 324, 425, 657, 1181, 1212
DpnII GATC 6 cut(s) 162, 322, 423, 655, 1179, 1210
Eam1104I CTCTTC 3 cut(s) 227, 507, 1063
EarI CTCTTC 3 cut(s) 227, 507, 1063
EciI GGCGGA 1 cut(s) 344
Eco130I CCWWGG 2 cut(s) 430, 436
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 1044
Eco81I CCTNAGG 1 cut(s) 1254
EcoRII CCWGG 3 cut(s) 43, 347, 359
EcoT14I CCWWGG 2 cut(s) 430, 436
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 2 cut(s) 430, 436
FalI AAGNNNNNCTT 2 cut(s) 925, 957
FaqI GGGAC 1 cut(s) 254
FauI CCCGC 2 cut(s) 781, 889
FbaI TGATCA 1 cut(s) 1210
FblI GTMKAC 1 cut(s) 713
Fnu4HI GCNGC 2 cut(s) 402, 894
FokI GGATG 3 cut(s) 224, 350, 841
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 402, 894
FspBI CTAG 3 cut(s) 285, 546, 885
GlaI GCGC 1 cut(s) 463
GluI GCNGC 2 cut(s) 402, 894
GsuI CTGGAG 2 cut(s) 30, 50
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 3 cut(s) 435, 700, 1186
HapII CCGG 3 cut(s) 35, 675, 1312
HhaI GCGC 1 cut(s) 464
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 5 cut(s) 5, 101, 122, 299, 1227
HpaII CCGG 3 cut(s) 35, 675, 1312
HphI GGTGA 4 cut(s) 49, 778, 1205, 1242
Hpy166II GTNNAC 2 cut(s) 714, 1250
Hpy188I TCNGA 2 cut(s) 304, 327
Hpy188III TCNNGA 7 cut(s) 9, 160, 285, 421, 1042, 1150, 1256
Hpy8I GTNNAC 2 cut(s) 714, 1250
HpyAV CCTTC 5 cut(s) 11, 197, 507, 528, 628
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 7 cut(s) 83, 401, 533, 608, 861, 913, 970
HpyF10VI GCNNNNNNNGC 1 cut(s) 858
HpyF3I CTNAG 3 cut(s) 579, 1116, 1254
HpySE526I ACGT 1 cut(s) 603
HspAI GCGC 1 cut(s) 462
KpnI GGTACC 1 cut(s) 1072
Ksp22I TGATCA 1 cut(s) 1210
Kzo9I GATC 6 cut(s) 162, 322, 423, 655, 1179, 1210
LguI GCTCTTC 1 cut(s) 1063
LmnI GCTCC 2 cut(s) 31, 624
Lsp1109I GCAGC 2 cut(s) 413, 880
LweI GCATC 1 cut(s) 711
MaeI CTAG 3 cut(s) 285, 546, 885
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 3 cut(s) 190, 766, 899
MalI GATC 6 cut(s) 164, 324, 425, 657, 1181, 1212
MboI GATC 6 cut(s) 162, 322, 423, 655, 1179, 1210
MflI RGATCY 1 cut(s) 423
MhlI GDGCHC 4 cut(s) 44, 641, 809, 984
MluCI AATT 6 cut(s) 53, 84, 744, 856, 1103, 1372
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 602, 664
MnlI CCTC 5 cut(s) 167, 228, 292, 1103, 1263
MroXI GAANNNNTTC 1 cut(s) 1057
MseI TTAA 3 cut(s) 750, 1221, 1375
MslI CAYNNNNRTG 5 cut(s) 147, 264, 812, 1148, 1175
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 3 cut(s) 35, 675, 1312
MspR9I CCNGG 3 cut(s) 45, 349, 361
MvaI CCWGG 3 cut(s) 45, 349, 361
MwoI GCNNNNNNNGC 1 cut(s) 858
NcoI CCATGG 1 cut(s) 430
NdeII GATC 6 cut(s) 162, 322, 423, 655, 1179, 1210
NlaIV GGNNCC 6 cut(s) 33, 353, 808, 930, 981, 1070
NmuCI GTSAC 1 cut(s) 766
NspI RCATGY 1 cut(s) 974
PagI TCATGA 1 cut(s) 1149
PciSI GCTCTTC 1 cut(s) 1063
PdmI GAANNNNTTC 1 cut(s) 1057
PfeI GAWTC 4 cut(s) 101, 122, 299, 1227
PkrI GCNGC 2 cut(s) 403, 895
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 603
Psp6I CCWGG 3 cut(s) 43, 347, 359
PspGI CCWGG 3 cut(s) 43, 347, 359
PspN4I GGNNCC 6 cut(s) 33, 353, 808, 930, 981, 1070
PspPI GGNCC 2 cut(s) 672, 1184
PsuI RGATCY 1 cut(s) 423
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 3 cut(s) 386, 818, 1070
RsaNI GTAC 3 cut(s) 385, 817, 1069
RseI CAYNNNNRTG 5 cut(s) 147, 264, 812, 1148, 1175
SalI GTCGAC 1 cut(s) 712
SapI GCTCTTC 1 cut(s) 1063
SaqAI TTAA 3 cut(s) 750, 1221, 1375
SatI GCNGC 2 cut(s) 402, 894
Sau3AI GATC 6 cut(s) 162, 322, 423, 655, 1179, 1210
Sau96I GGNCC 2 cut(s) 672, 1184
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 45, 349, 361
SduI GDGCHC 4 cut(s) 44, 641, 809, 984
SfaNI GCATC 1 cut(s) 711
SinI GGWCC 1 cut(s) 672
SmiMI CAYNNNNRTG 5 cut(s) 147, 264, 812, 1148, 1175
SmlI CTYRAG 1 cut(s) 1156
SmoI CTYRAG 1 cut(s) 1156
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 6 cut(s) 53, 84, 744, 856, 1103, 1372
SsiI CCGC 4 cut(s) 209, 355, 788, 896
SspI AATATT 1 cut(s) 417
SspMI CTAG 3 cut(s) 285, 546, 885
StyD4I CCNGG 3 cut(s) 43, 347, 359
StyI CCWWGG 2 cut(s) 430, 436
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 606
TaqI TCGA 3 cut(s) 658, 713, 989
TasI AATT 6 cut(s) 53, 84, 744, 856, 1103, 1372
TatI WGTACW 1 cut(s) 816
TfiI GAWTC 4 cut(s) 101, 122, 299, 1227
Tru1I TTAA 3 cut(s) 750, 1221, 1375
Tru9I TTAA 3 cut(s) 750, 1221, 1375
TscAI CASTG 3 cut(s) 73, 233, 1194
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 2 cut(s) 401, 893
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 5 cut(s) 228, 362, 555, 845, 1166
TspGWI ACGGA 3 cut(s) 82, 350, 841
TspRI CASTG 3 cut(s) 73, 233, 1194
VpaK11BI GGWCC 1 cut(s) 672
XapI RAATTY 1 cut(s) 1103
XbaI TCTAGA 1 cut(s) 284
XceI RCATGY 1 cut(s) 974
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 713
XmnI GAANNNNTTC 1 cut(s) 1057
XspI CTAG 3 cut(s) 285, 546, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.