Rh6BG362300

Wax ester synthase-like Acyl-CoA acyltransferase domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
59235178 .. 59243701
8524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG362300.1

Sequence Viewer

Length: 1332 bp
ATGGAGTTTGGAGAAGAAGGACTACTAGAGCCGGTGAGCCCTGGTGGTCAATTCTTCAACAGCACTGTCTTATCTCTTGCAATTATTGCTGTTTTGGAAGCACAAGTTCCAATCAACGATTCTCAAACTTTTTCACTTCTTAAAAATGTCTTCCTCCCGATCAATCCACGCTTCTCTTCCATCATGGTTAAAGATGTAGATGAAAAGAATAAGCAGTGGAAGAGGGTTCAAGTGAAGCTGGAAGACCATGTACATGTCCCCATTTTCCCATCCGGAATGTCACTTGAATCATATGATACTTACTTTGATGAATATATAACGAAGATAGCATCAGAAACATTCCCACAAAGCAGGCCATTATGGGAAATTCATCTTTTCAAATACCCAACAAGTCATGCAGCTGGACAACTAATATTCAAGATCCATCATGCCCTTGGCGATGGCTACTCTCTCATGGGCGCTCTTCTCTCTTGTCTCCAAAATACTCACAATCCTTCTCTTCCTCTGACATTTCCTCCACTAATGGGTGCAAAGAATGAAACTAGTAGTCGATCTCGTGGGTTTGAGTTTGTGCCTAAGATACTTTCTGCCGTTATCAACGGTGCATGGGATTTTAGTTGGAGCATTTTAAAGGGCACTTGGGTTGAAGATGATCGAACACCAATAAGGTCCGGCGTTGATGGAGTTGAGTTTCGGCCTGTGTCCATATCGACCTTGATGCTGTCTATTGAGGAAATCAAACTTATCAAGAACAAGCTTGGAGTGACGATAAATGATGTAATTGCGGGAACAATCTTTCTGGGCACCCGAATGTACATGCAACGGATGAATAGTGAAAAATCAAGTAGCCAGAATTGCACGGCATTGGTGTTGCTGAATACTAGACTTGCTGAGGGTTACAAGTCAGTGCAGGAGATGTTGATGGAACCAAGCAAGTCTTCTTGGGGCAACCGATTTGTGTTCTTGCATGTCCCGGTGCCCAAGTCGAGTGAAGTTTCCAAGCCATTGGATTTTGTATGGGAAGCACAGAAGATAGTCAAGAGACATAGAAACTCTTCAGCTTGGTACCTCACTATTAGGCTCTGGGACATTTTGAAGAAATTTAGAGGCGCTGAGGTTGCGGCTGGATACATTCATAGAACACTCATGAACTCAAGCATGGCAGTCACAAATATGATTGGGCCACTAGAACAAATGTCTTTGGCTGATCAACCCATTAAAGGAGTCTACTTTATGGTGGTCGGTTCACCTCAGGTAATATATACATCTATATTTTTAAAAATAATTAATCAACTATTTTGCACAAATTTTATGCATATTTGTTTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

50.0

Weight (kDa)

8.49

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_cat PF03007 63 - 261 2e-10 Wax ester synthase/diacylglycerol acyltransferase catalytic domain
WS_DGAT_C PF06974 315 - 423 1.7e-23 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1065
AccB1I GGYRCC 3 cut(s) 803, 976, 1065
AccI GTMKAC 1 cut(s) 1227
AccIII TCCGGA 1 cut(s) 272
AciI CCGC 2 cut(s) 785, 1121
AclWI GGATC 1 cut(s) 415
AcsI RAATTY 3 cut(s) 366, 1100, 1306
AcuI CTGAAG 1 cut(s) 1041
AfaI GTAC 3 cut(s) 252, 815, 1067
AfiI CCNNNNNNNGG 2 cut(s) 524, 1220
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 7 cut(s) 58, 230, 287, 379, 418, 647, 1096
AhlI ACTAGT 1 cut(s) 542
AjnI CCWGG 1 cut(s) 40
AjuI GAANNNNNNNTTGG 4 cut(s) 103, 135, 922, 954
AluBI AGCT 4 cut(s) 238, 401, 757, 1061
AluI AGCT 4 cut(s) 238, 401, 757, 1061
Alw26I GTCTC 2 cut(s) 479, 1036
AlwI GGATC 1 cut(s) 415
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 3 cut(s) 353, 695, 1181
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 3 cut(s) 366, 1100, 1306
AseI ATTAAT 1 cut(s) 1287
Asp700I GAANNNNTTC 1 cut(s) 1054
Asp718I GGTACC 1 cut(s) 1065
AspLEI GCGC 2 cut(s) 461, 1112
AspS9I GGNCC 2 cut(s) 669, 1181
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 2 cut(s) 46, 1239
AvaII GGWCC 1 cut(s) 669
AxyI CCTNAGG 1 cut(s) 1251
BaeGI GKGCMC 3 cut(s) 638, 806, 981
BanI GGYRCC 3 cut(s) 803, 976, 1065
BanII GRGCYC 1 cut(s) 41
BarI GAAGNNNNNNTAC 3 cut(s) 38, 234, 266
BauI CACGAG 1 cut(s) 555
BbsI GAAGAC 3 cut(s) 142, 249, 930
BbvCI CCTCAGC 2 cut(s) 891, 1113
BbvI GCAGC 1 cut(s) 410
BccI CCATC 6 cut(s) 188, 277, 432, 434, 674, 916
BceAI ACGGC 2 cut(s) 575, 876
BcgI CGANNNNNNTGC 2 cut(s) 700, 734
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 1 cut(s) 1121
BclI TGATCA 1 cut(s) 1207
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 2 cut(s) 479, 1036
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 4 cut(s) 26, 543, 882, 1187
BfoI RGCGCY 2 cut(s) 462, 1113
BfuI GTATCC 1 cut(s) 1121
BisI GCNGC 2 cut(s) 399, 1122
BlsI GCNGC 2 cut(s) 400, 1123
Bme1390I CCNGG 2 cut(s) 42, 974
Bme18I GGWCC 1 cut(s) 669
BmgT120I GGNCC 2 cut(s) 669, 1181
BmiI GGNNCC 4 cut(s) 805, 927, 978, 1067
BmrFI CCNGG 2 cut(s) 42, 974
BmsI GCATC 2 cut(s) 338, 708
BpiI GAAGAC 3 cut(s) 142, 249, 930
Bpu10I CCTNAGC 2 cut(s) 891, 1113
BpuEI CTTGAG 1 cut(s) 1138
BpuMI CCSGG 1 cut(s) 974
BsaJI CCNNGG 2 cut(s) 40, 433
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 524, 1220
Bse118I RCCGGY 1 cut(s) 31
Bse21I CCTNAGG 1 cut(s) 1251
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 40, 433
BseGI GGATG 2 cut(s) 269, 831
BseLI CCNNNNNNNGG 2 cut(s) 524, 1220
BseMII CTCAG 3 cut(s) 882, 1104, 1265
BseSI GKGCMC 3 cut(s) 638, 806, 981
BseXI GCAGC 1 cut(s) 410
BsgI GTGCAG 1 cut(s) 929
BshFI GGCC 3 cut(s) 355, 697, 1183
BshNI GGYRCC 3 cut(s) 803, 976, 1065
BsiSI CCGG 4 cut(s) 32, 273, 672, 974
BslFI GGGAC 3 cut(s) 242, 956, 1100
BslI CCNNNNNNNGG 2 cut(s) 524, 1220
BsmAI GTCTC 2 cut(s) 479, 1036
BsmFI GGGAC 3 cut(s) 242, 956, 1100
BsnI GGCC 3 cut(s) 355, 697, 1183
Bsp1286I GDGCHC 4 cut(s) 41, 638, 806, 981
Bsp13I TCCGGA 1 cut(s) 272
Bsp1407I TGTACA 2 cut(s) 250, 813
Bsp143I GATC 5 cut(s) 159, 420, 551, 652, 1207
BspACI CCGC 2 cut(s) 785, 1121
BspANI GGCC 3 cut(s) 355, 697, 1183
BspCNI CTCAG 3 cut(s) 883, 1105, 1264
BspEI TCCGGA 1 cut(s) 272
BspHI TCATGA 2 cut(s) 1146, 1328
BspLI GGNNCC 4 cut(s) 805, 927, 978, 1067
BspPI GGATC 1 cut(s) 415
BspQI GCTCTTC 1 cut(s) 468
BspT107I GGYRCC 3 cut(s) 803, 976, 1065
BsrFI RCCGGY 1 cut(s) 31
BsrGI TGTACA 2 cut(s) 250, 813
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 40, 433
BssMI GATC 5 cut(s) 159, 420, 551, 652, 1207
BssSI CACGAG 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 433
Bst2BI CACGAG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 67, 602
Bst6I CTCTTC 5 cut(s) 181, 215, 468, 504, 1060
BstAPI GCANNNNNTGC 1 cut(s) 86
BstAUI TGTACA 2 cut(s) 250, 813
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 4 cut(s) 576, 891, 1113, 1251
BstF5I GGATG 2 cut(s) 269, 831
BstH2I RGCGCY 2 cut(s) 462, 1113
BstHHI GCGC 2 cut(s) 461, 1112
BstKTI GATC 5 cut(s) 162, 423, 554, 655, 1210
BstMAI GTCTC 2 cut(s) 479, 1036
BstMBI GATC 5 cut(s) 159, 420, 551, 652, 1207
BstMWI GCNNNNNNNGC 3 cut(s) 86, 855, 1118
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 3 cut(s) 257, 820, 971
BstSCI CCNGG 2 cut(s) 40, 972
BstSLI GKGCMC 3 cut(s) 638, 806, 981
BstV1I GCAGC 1 cut(s) 410
BstV2I GAAGAC 3 cut(s) 142, 249, 930
BstX2I RGATCY 1 cut(s) 420
BstXI CCANNNNNNTGG 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 420
Bsu36I CCTNAGG 1 cut(s) 1251
BsuI GTATCC 1 cut(s) 1121
BsuRI GGCC 3 cut(s) 355, 697, 1183
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 269, 831
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 3 cut(s) 63, 221, 912
Cac8I GCNNGC 1 cut(s) 353
CciI TCATGA 2 cut(s) 1146, 1328
CfoI GCGC 2 cut(s) 461, 1112
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 669, 1181
Csp6I GTAC 3 cut(s) 251, 814, 1066
CviQI GTAC 3 cut(s) 251, 814, 1066
DdeI CTNAG 4 cut(s) 576, 891, 1113, 1251
DpnI GATC 5 cut(s) 161, 422, 553, 654, 1209
DpnII GATC 5 cut(s) 159, 420, 551, 652, 1207
DraI TTTAAA 2 cut(s) 630, 1278
Eam1104I CTCTTC 5 cut(s) 181, 215, 468, 504, 1060
EarI CTCTTC 5 cut(s) 181, 215, 468, 504, 1060
Eco130I CCWWGG 1 cut(s) 433
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 669
Eco57I CTGAAG 1 cut(s) 1041
Eco81I CCTNAGG 1 cut(s) 1251
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 1317
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 433
FalI AAGNNNNNCTT 2 cut(s) 922, 954
FaqI GGGAC 3 cut(s) 242, 956, 1100
FauI CCCGC 1 cut(s) 778
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 1 cut(s) 1207
FblI GTMKAC 1 cut(s) 1227
Fnu4HI GCNGC 2 cut(s) 399, 1122
FokI GGATG 2 cut(s) 256, 838
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 399, 1122
FspBI CTAG 4 cut(s) 26, 543, 882, 1187
GlaI GCGC 2 cut(s) 460, 1111
GluI GCNGC 2 cut(s) 399, 1122
HaeII RGCGCY 2 cut(s) 462, 1113
HaeIII GGCC 3 cut(s) 355, 697, 1183
HapII CCGG 4 cut(s) 32, 273, 672, 974
HhaI GCGC 2 cut(s) 461, 1112
Hin6I GCGC 2 cut(s) 459, 1110
HinP1I GCGC 2 cut(s) 459, 1110
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 3 cut(s) 119, 287, 1224
HpaII CCGG 4 cut(s) 32, 273, 672, 974
HphI GGTGA 2 cut(s) 46, 1239
Hpy166II GTNNAC 2 cut(s) 1228, 1247
Hpy188I TCNGA 2 cut(s) 334, 507
Hpy188III TCNNGA 7 cut(s) 157, 273, 418, 748, 1039, 1147, 1329
Hpy8I GTNNAC 2 cut(s) 1228, 1247
HpyAV CCTTC 2 cut(s) 11, 504
HpyCH4III ACNGT 2 cut(s) 67, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 855, 1118
HpyF3I CTNAG 4 cut(s) 576, 891, 1113, 1251
HspAI GCGC 2 cut(s) 459, 1110
Kpn2I TCCGGA 1 cut(s) 272
KpnI GGTACC 1 cut(s) 1069
Ksp22I TGATCA 1 cut(s) 1207
Kzo9I GATC 5 cut(s) 159, 420, 551, 652, 1207
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 621
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 2 cut(s) 338, 708
MaeI CTAG 4 cut(s) 26, 543, 882, 1187
MaeIII GTNAC 4 cut(s) 279, 763, 896, 1165
MalI GATC 5 cut(s) 161, 422, 553, 654, 1209
MboI GATC 5 cut(s) 159, 420, 551, 652, 1207
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 4 cut(s) 41, 638, 806, 981
MluCI AATT 8 cut(s) 50, 81, 366, 780, 853, 1100, 1284, 1306
MlyI GAGTC 1 cut(s) 1233
MmeI TCCRAC 1 cut(s) 599
Mph1103I ATGCAT 1 cut(s) 1317
MroI TCCGGA 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 1054
MseI TTAA 6 cut(s) 141, 189, 629, 1218, 1277, 1287
MslI CAYNNNNRTG 3 cut(s) 252, 809, 1172
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 4 cut(s) 32, 273, 672, 974
MspR9I CCNGG 2 cut(s) 42, 974
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 86, 855, 1118
NciI CCSGG 1 cut(s) 974
NdeI CATATG 1 cut(s) 292
NdeII GATC 5 cut(s) 159, 420, 551, 652, 1207
NlaIV GGNNCC 4 cut(s) 805, 927, 978, 1067
NmuCI GTSAC 3 cut(s) 279, 763, 1165
NsiI ATGCAT 1 cut(s) 1317
NspI RCATGY 3 cut(s) 257, 820, 971
PagI TCATGA 2 cut(s) 1146, 1328
PciI ACATGT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 1054
PfeI GAWTC 2 cut(s) 119, 287
PkrI GCNGC 2 cut(s) 400, 1123
PleI GAGTC 1 cut(s) 1232
PpsI GAGTC 1 cut(s) 1232
PscI ACATGT 1 cut(s) 253
PshBI ATTAAT 1 cut(s) 1287
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 4 cut(s) 805, 927, 978, 1067
PspPI GGNCC 2 cut(s) 669, 1181
PsuI RGATCY 1 cut(s) 420
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 3 cut(s) 252, 815, 1067
RsaNI GTAC 3 cut(s) 251, 814, 1066
RseI CAYNNNNRTG 3 cut(s) 252, 809, 1172
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 6 cut(s) 141, 189, 629, 1218, 1277, 1287
SatI GCNGC 2 cut(s) 399, 1122
Sau3AI GATC 5 cut(s) 159, 420, 551, 652, 1207
Sau96I GGNCC 2 cut(s) 669, 1181
SchI GAGTC 1 cut(s) 1233
ScrFI CCNGG 2 cut(s) 42, 974
SduI GDGCHC 4 cut(s) 41, 638, 806, 981
SfaNI GCATC 2 cut(s) 338, 708
SinI GGWCC 1 cut(s) 669
SmiMI CAYNNNNRTG 3 cut(s) 252, 809, 1172
SmlI CTYRAG 1 cut(s) 1153
SmoI CTYRAG 1 cut(s) 1153
SpeI ACTAGT 1 cut(s) 542
Sse9I AATT 8 cut(s) 50, 81, 366, 780, 853, 1100, 1284, 1306
SsiI CCGC 2 cut(s) 785, 1121
SspI AATATT 1 cut(s) 414
SspMI CTAG 4 cut(s) 26, 543, 882, 1187
StyD4I CCNGG 2 cut(s) 40, 972
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 2 cut(s) 67, 602
TaqI TCGA 4 cut(s) 550, 655, 710, 986
TasI AATT 8 cut(s) 50, 81, 366, 780, 853, 1100, 1284, 1306
TatI WGTACW 2 cut(s) 250, 813
TauI GCSGC 1 cut(s) 1124
TfiI GAWTC 2 cut(s) 119, 287
Tru1I TTAA 6 cut(s) 141, 189, 629, 1218, 1277, 1287
Tru9I TTAA 6 cut(s) 141, 189, 629, 1218, 1277, 1287
TscAI CASTG 3 cut(s) 70, 221, 912
TseFI GTSAC 3 cut(s) 279, 763, 1165
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 3 cut(s) 279, 763, 1165
TspDTI ATGAA 8 cut(s) 216, 324, 359, 552, 842, 1124, 1163, 1317
TspGWI ACGGA 1 cut(s) 838
TspRI CASTG 3 cut(s) 70, 221, 912
VpaK11BI GGWCC 1 cut(s) 669
VspI ATTAAT 1 cut(s) 1287
XapI RAATTY 3 cut(s) 366, 1100, 1306
XceI RCATGY 3 cut(s) 257, 820, 971
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 1227
XmnI GAANNNNTTC 1 cut(s) 1054
XspI CTAG 4 cut(s) 26, 543, 882, 1187
Zsp2I ATGCAT 1 cut(s) 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.