FvH4_3g28230

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000634
Physical Location & Seq
Reverse (-)
21191455 .. 21196353
4899 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28230.t1

Sequence Viewer

Length: 234 bp
ATGATTGGGCCATTGGAACAAATGAGTTTGGCCAATCACCCCATTAAAGGAATTTATTTTATGGTGACTGGTTCACCTCAGAGTCTTACTATGACAGTGATGAGCTATAATGGAAAGCTAAGGATTGCCTTGGGTGCTGAAAAAGGCTTCATAGATTCCAAGATATTGCAGGGATGCATGAAAGATGCTTTTCAGGTGATTTGTGAAGCTGGGACTGAATTTCGTATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

78

Amino Acids

8.44

Weight (kDa)

7.79

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_C PF06974 1 - 67 1.4e-18 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 2 cut(s) 51, 218
AfiI CCNNNNNNNGG 1 cut(s) 47
AluBI AGCT 3 cut(s) 105, 118, 209
AluI AGCT 3 cut(s) 105, 118, 209
AoxI GGCC 2 cut(s) 8, 30
ApoI RAATTY 2 cut(s) 51, 218
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 4 cut(s) 29, 66, 76, 208
BalI TGGCCA 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 8
BmsI GCATC 2 cut(s) 164, 175
Bpu10I CCTNAGC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 209
BshFI GGCC 2 cut(s) 10, 32
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 2 cut(s) 10, 32
BspANI GGCC 2 cut(s) 10, 32
BspCNI CTCAG 1 cut(s) 91
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 78, 119
BstF5I GGATG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 134
BsuRI GGCC 2 cut(s) 10, 32
BtsCI GGATG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 8
CviAII CATG 1 cut(s) 178
CviJI RGCY 6 cut(s) 10, 32, 105, 118, 147, 209
CviKI_1 RGCY 6 cut(s) 10, 32, 105, 118, 147, 209
DdeI CTNAG 2 cut(s) 78, 119
EaeI YGGCCR 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 181
FaiI YATR 6 cut(s) 62, 92, 108, 152, 179, 227
FaqI GGGAC 1 cut(s) 226
FatI CATG 1 cut(s) 177
FokI GGATG 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 213
HaeIII GGCC 2 cut(s) 10, 32
Hin1II CATG 1 cut(s) 181
HinfI GANTC 2 cut(s) 82, 155
HphI GGTGA 4 cut(s) 29, 66, 76, 208
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 169, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 78, 119
Hsp92II CATG 1 cut(s) 181
LpnPI CCDG 4 cut(s) 54, 155, 179, 195
LweI GCATC 2 cut(s) 164, 175
MaeIII GTNAC 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 3 cut(s) 51, 218, 229
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 1 cut(s) 87
Mox20I TGGCCA 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 179
MscI TGGCCA 1 cut(s) 32
MseI TTAA 2 cut(s) 45, 232
Msp20I TGGCCA 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 134
NlaIII CATG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 179
PfeI GAWTC 1 cut(s) 155
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 45, 232
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 91
SetI ASST 5 cut(s) 79, 107, 120, 198, 211
SfaNI GCATC 2 cut(s) 164, 175
SgeI CNNG 7 cut(s) 81, 142, 172, 182, 190, 206, 222
Sse9I AATT 3 cut(s) 51, 218, 229
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 97
TasI AATT 3 cut(s) 51, 218, 229
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 45, 232
Tru9I TTAA 2 cut(s) 45, 232
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 139, 194
TspRI CASTG 1 cut(s) 102
XapI RAATTY 2 cut(s) 51, 218
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.