Rmu_sc0002951.1_g000001

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002951.1
OG0000634
Physical Location & Seq
Reverse (-)
1 .. 2116
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002951.1_g000001.1.cds

Sequence Viewer

Length: 771 bp
atggagtttggcgaagaaggattactacaagagccggtgagccctggtggtcagttcatcaacagctctgtcttatctcttgcaattctggccgttttggaatcacaagttccaatcgacgattctcaaacattttttcttctgaaaaatgtcttcctcccgatcaatccacgcttctcttccatcatggttgaaggtgcagataaaaagaataagcagtggaagaaggttacagtgaagctggaagaccacgtccatgtccccattttcccctctggaatgtcatcacctgcatcatacgatatttactttgatgagtatataacgaagatagcatcagaaacattcccacaaagcaggccattatgggaacttcatcttttcaagtacccaacaagtcatgcagctggacacatgatattcaagatccaccatgcccttggcgatggctactctctcatgggcgctcttctctcttgcctccagaatgctcacaatccttccattcctctgacatttccgacattaaagagtgcaaaaaatgaaactagtagtcgatctcgtgcgtttgagtttatgccgaagatactttcttccgttttcaacggtgcatgggatttcagttggagcattttgaagggcacttgggttgaagatgatcgaacaccaataaggtccggtgttgaaggagttgagtttcgacctgtgtcggtgtcaaccttgatgctgcctattgaggaaattaaacttatcaagaacaagcttggagtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

257

Amino Acids

28.76

Weight (kDa)

6.24

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 298
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 1 cut(s) 389
AgsI TTSAA 7 cut(s) 194, 385, 424, 604, 637, 653, 686
AhlI ACTAGT 1 cut(s) 548
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AluBI AGCT 4 cut(s) 66, 241, 407, 763
AluI AGCT 4 cut(s) 66, 241, 407, 763
AlwI GGATC 1 cut(s) 421
AoxI GGCC 2 cut(s) 90, 359
ApeKI GCWGC 2 cut(s) 404, 727
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 675
AsuHPI GGTGA 2 cut(s) 49, 279
AvaII GGWCC 1 cut(s) 675
BaeGI GKGCMC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 44
BarI GAAGNNNNNNTAC 3 cut(s) 9, 38, 41
BauI CACGAG 1 cut(s) 561
BbsI GAAGAC 2 cut(s) 145, 252
BbvI GCAGC 2 cut(s) 416, 714
BccI CCATC 2 cut(s) 191, 440
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 45
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 2 cut(s) 405, 728
BlsI GCNGC 2 cut(s) 406, 729
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 675
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 675
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 3 cut(s) 302, 344, 714
BoxI GACNNNNGTC 1 cut(s) 706
BpiI GAAGAC 2 cut(s) 145, 252
BpmI CTGGAG 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 43, 439
BsaWI WCCGGW 1 cut(s) 677
Bse118I RCCGGY 1 cut(s) 34
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 43, 439
BseSI GKGCMC 1 cut(s) 644
BseXI GCAGC 2 cut(s) 416, 714
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 2 cut(s) 92, 361
BsiSI CCGG 2 cut(s) 35, 678
BslFI GGGAC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 2 cut(s) 92, 361
Bsp1286I GDGCHC 2 cut(s) 44, 644
Bsp143I GATC 4 cut(s) 162, 426, 557, 658
BspANI GGCC 2 cut(s) 92, 361
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 1 cut(s) 421
BspQI GCTCTTC 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 43, 439
BssMI GATC 4 cut(s) 162, 426, 557, 658
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 235, 608
Bst6I CTCTTC 2 cut(s) 184, 474
BstC8I GCNNGC 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 4 cut(s) 165, 429, 560, 661
BstMBI GATC 4 cut(s) 162, 426, 557, 658
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 45
BstPAI GACNNNNGTC 1 cut(s) 706
BstSCI CCNGG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 644
BstV1I GCAGC 2 cut(s) 416, 714
BstV2I GAAGAC 2 cut(s) 145, 252
BstX2I RGATCY 1 cut(s) 426
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 2 cut(s) 92, 361
BtgZI GCGATG 1 cut(s) 459
BtrI CACGTC 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 224, 240
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 359
CfoI GCGC 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 675
Csp6I GTAC 1 cut(s) 388
CviAII CATG 7 cut(s) 187, 257, 401, 415, 434, 460, 612
CviJI RGCY 9 cut(s) 34, 42, 66, 92, 241, 361, 407, 450, 763
CviKI_1 RGCY 9 cut(s) 34, 42, 66, 92, 241, 361, 407, 450, 763
CviQI GTAC 1 cut(s) 388
DpnI GATC 4 cut(s) 164, 428, 559, 660
DpnII GATC 4 cut(s) 162, 426, 557, 658
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 184, 474
EarI CTCTTC 2 cut(s) 184, 474
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 675
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 7 cut(s) 190, 260, 404, 418, 437, 463, 615
FaqI GGGAC 1 cut(s) 245
FatI CATG 7 cut(s) 186, 256, 400, 414, 433, 459, 611
Fnu4HI GCNGC 2 cut(s) 405, 728
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 405, 728
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 466
GluI GCNGC 2 cut(s) 405, 728
GsuI CTGGAG 1 cut(s) 467
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 2 cut(s) 92, 361
HapII CCGG 2 cut(s) 35, 678
HhaI GCGC 1 cut(s) 467
Hin1II CATG 7 cut(s) 190, 260, 404, 418, 437, 463, 615
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 2 cut(s) 101, 122
HpaII CCGG 2 cut(s) 35, 678
HphI GGTGA 2 cut(s) 49, 279
Hpy166II GTNNAC 1 cut(s) 717
Hpy188I TCNGA 4 cut(s) 144, 340, 513, 522
Hpy188III TCNNGA 5 cut(s) 160, 276, 424, 484, 754
Hpy8I GTNNAC 1 cut(s) 717
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 6 cut(s) 11, 188, 220, 510, 631, 680
HpyCH4III ACNGT 2 cut(s) 235, 608
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 6 cut(s) 83, 200, 293, 404, 536, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 7 cut(s) 190, 260, 404, 418, 437, 463, 615
HspAI GCGC 1 cut(s) 465
Kzo9I GATC 4 cut(s) 162, 426, 557, 658
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 1 cut(s) 627
Lsp1109I GCAGC 2 cut(s) 416, 714
LweI GCATC 3 cut(s) 302, 344, 714
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 229
MalI GATC 4 cut(s) 164, 428, 559, 660
MboI GATC 4 cut(s) 162, 426, 557, 658
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 2 cut(s) 44, 644
MluCI AATT 2 cut(s) 84, 741
MmeI TCCRAC 2 cut(s) 545, 605
MnlI CCTC 5 cut(s) 167, 283, 491, 519, 730
MseI TTAA 2 cut(s) 527, 744
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 2 cut(s) 35, 678
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 4 cut(s) 162, 426, 557, 658
NlaIII CATG 7 cut(s) 190, 260, 404, 418, 437, 463, 615
PaqCI CACCTGC 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 474
PctI GAATGC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 101, 122
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 2 cut(s) 406, 729
PshAI GACNNNNGTC 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspPI GGNCC 1 cut(s) 675
PsuI RGATCY 1 cut(s) 426
PsyI GACNNNGTC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 2 cut(s) 527, 744
SatI GCNGC 2 cut(s) 405, 728
Sau3AI GATC 4 cut(s) 162, 426, 557, 658
Sau96I GGNCC 1 cut(s) 675
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 2 cut(s) 44, 644
SfaNI GCATC 3 cut(s) 302, 344, 714
SinI GGWCC 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 255
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 2 cut(s) 84, 741
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 2 cut(s) 235, 608
TaiI ACGT 1 cut(s) 255
TaqI TCGA 4 cut(s) 117, 556, 661, 700
TasI AATT 2 cut(s) 84, 741
TfiI GAWTC 2 cut(s) 101, 122
Tru1I TTAA 2 cut(s) 527, 744
Tru9I TTAA 2 cut(s) 527, 744
TscAI CASTG 2 cut(s) 224, 240
TseI GCWGC 2 cut(s) 404, 727
TspDTI ATGAA 3 cut(s) 46, 365, 558
TspGWI ACGGA 1 cut(s) 586
TspRI CASTG 2 cut(s) 224, 240
Tth111I GACNNNGTC 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 675
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.