Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0019236

Physical Location & Seq

Genomic Coordinates Reverse (-)

34670999 .. 34672209

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1214100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCTCGGATCTTCGAGCACTTCGTGGTGTGCGGGATCGGACCCAAGATTCGGACCATCGACGGCGCCAAAGGATTACACGGCTTCGGCACGTATTACCAGACGTCTCTTCTCGATCAGTACCCTCCGCCCAATCACATTCTCTACCCTCCTCCGCCGCCTCAGCTCCCCACCGTAAGTGCCACTCCACCGCCGCCACAACCGCCCAATCTTCACTGCTTCGATTTCCGCTCGCATGTCTTATTGTTTCTTTCTAAGGTTGGATTCCCAATTTGCTGCAGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

96

Amino Acids

10.52

Weight (kDa)

8.82

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12390 FvH4_5g12410
malus_domestica	MD06G1214100.v1.1
rosa_multiflora	Rmu_ssc0000482.1_g000018
rosa_roxburghii	Rroxscaffold_3G00232330
rosa_rugosa	Rorug06G0033100 Rorug07G0110400
rosa_samantha	Rh5DG016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	231
AciI	CCGC	8 cut(s)	33, 128, 155, 158, 191, 194, 203, 229
AclWI	GGATC	2 cut(s)	17, 44
AcyI	GRCGYC	2 cut(s)	66, 104
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	51
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	17, 44
ApeKI	GCWGC	1 cut(s)	276
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	41, 54
AvaII	GGWCC	2 cut(s)	41, 54
BanI	GGYRCC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	2 cut(s)	79, 97
BcoDI	GTCTC	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	3 cut(s)	158, 194, 277
BlsI	GCNGC	3 cut(s)	159, 195, 278
Bme18I	GGWCC	2 cut(s)	41, 54
BmgT120I	GGNCC	2 cut(s)	41, 54
BmiI	GGNNCC	2 cut(s)	43, 67
Bpu10I	CCTNAGC	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	93
BsaHI	GRCGYC	2 cut(s)	66, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	9, 36, 115
BspACI	CCGC	8 cut(s)	33, 128, 155, 158, 191, 194, 203, 229
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	43, 67
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	2 cut(s)	17, 44
BspT107I	GGYRCC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	231
BssMI	GATC	3 cut(s)	9, 36, 115
BssNI	GRCGYC	2 cut(s)	66, 104
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	2 cut(s)	66, 104
BstBAI	YACGTR	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	162, 255
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	12, 39, 118
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	3 cut(s)	9, 36, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 202
BstNSI	RCATGY	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	41, 54
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	3 cut(s)	5, 84, 166
CviKI_1	RGCY	3 cut(s)	5, 84, 166
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	162, 255
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	3 cut(s)	11, 38, 117
DpnII	GATC	3 cut(s)	9, 36, 115
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	2 cut(s)	117, 144
Eco47I	GGWCC	2 cut(s)	41, 54
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	1 cut(s)	239
FaiI	YATR	1 cut(s)	237
FatI	CATG	1 cut(s)	235
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	158, 194, 277
Fsp4HI	GCNGC	3 cut(s)	158, 194, 277
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	158, 194, 277
HaeII	RGCGCY	1 cut(s)	69
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	2 cut(s)	66, 104
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	49, 264
Hpy188I	TCNGA	3 cut(s)	9, 41, 54
Hpy188III	TCNNGA	1 cut(s)	113
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	92, 104
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 202
HpyF3I	CTNAG	2 cut(s)	162, 255
HpySE526I	ACGT	2 cut(s)	92, 104
Hsp92I	GRCGYC	2 cut(s)	66, 104
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
Kzo9I	GATC	3 cut(s)	9, 36, 115
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	263
MaeII	ACGT	2 cut(s)	92, 104
MalI	GATC	3 cut(s)	11, 38, 117
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	3 cut(s)	9, 36, 115
MboII	GAAGA	3 cut(s)	4, 101, 203
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	270
Mly113I	GGCGCC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	5 cut(s)	135, 159, 162, 171, 275
MwoI	GCNNNNNNNGC	2 cut(s)	163, 202
NarI	GGCGCC	1 cut(s)	66
NdeII	GATC	3 cut(s)	9, 36, 115
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	2 cut(s)	43, 67
NspI	RCATGY	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	49, 264
PkrI	GCNGC	3 cut(s)	159, 195, 278
PluTI	GGCGCC	1 cut(s)	69
Ppu21I	YACGTR	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	43, 67
PspPI	GGNCC	2 cut(s)	41, 54
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SatI	GCNGC	3 cut(s)	158, 194, 277
Sau3AI	GATC	3 cut(s)	9, 36, 115
Sau96I	GGNCC	2 cut(s)	41, 54
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	4 cut(s)	95, 107, 168, 261
SfcI	CTRYAG	1 cut(s)	277
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	2 cut(s)	41, 54
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	8 cut(s)	33, 128, 155, 158, 191, 194, 203, 229
SspDI	GGCGCC	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	95, 107
TaqI	TCGA	4 cut(s)	15, 60, 114, 222
TasI	AATT	1 cut(s)	270
TauI	GCSGC	2 cut(s)	160, 196
TfiI	GAWTC	2 cut(s)	49, 264
TscAI	CASTG	1 cut(s)	221
TseI	GCWGC	1 cut(s)	276
TspRI	CASTG	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	41, 54
XceI	RCATGY	1 cut(s)	239
ZraI	GACGTC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.