Rroxscaffold_3G00232330

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
17990804 .. 17991706
903 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00232330.1

Sequence Viewer

Length: 165 bp
ATGGCTCAGATCTTCAAGCACTTCGTCGTCTGGGGGATCAGATCGGAGATCCAAACCCTCGACTGCCTCCAGAGGCTTCCACGGCTTCGCCGAAATGTACCTGCCGTCTTTGTTCGACCAGTTCCCACCCGCCAACCACACTCTCTACCCTCCTCTGCCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.22

Weight (kDa)

11.88

Isoelectric Point (pI)

83.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12390 FvH4_5g12410
malus_domestica MD06G1214100.v1.1
rosa_multiflora Rmu_ssc0000482.1_g000018
rosa_roxburghii Rroxscaffold_3G00232330
rosa_rugosa Rorug06G0033100 Rorug07G0110400
rosa_samantha Rh5DG016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AciI CCGC 2 cut(s) 130, 159
AclWI GGATC 2 cut(s) 43, 44
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 1 cut(s) 16
AlwI GGATC 2 cut(s) 43, 44
BceAI ACGGC 2 cut(s) 89, 98
BfuAI ACCTGC 1 cut(s) 109
BglII AGATCT 1 cut(s) 9
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 142
Bsp143I GATC 4 cut(s) 9, 36, 41, 48
BspACI CCGC 2 cut(s) 130, 159
BspCNI CTCAG 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 2 cut(s) 43, 44
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 4 cut(s) 9, 36, 41, 48
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 80
BstKTI GATC 4 cut(s) 12, 39, 44, 51
BstMBI GATC 4 cut(s) 9, 36, 41, 48
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 9, 48
BstYI RGATCY 2 cut(s) 9, 48
BtgI CCRYGG 1 cut(s) 80
BveI ACCTGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 98
CviJI RGCY 3 cut(s) 5, 76, 85
CviKI_1 RGCY 3 cut(s) 5, 76, 85
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 6
DpnI GATC 4 cut(s) 11, 38, 43, 50
DpnII GATC 4 cut(s) 9, 36, 41, 48
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 53
Hpy188I TCNGA 3 cut(s) 9, 41, 46
Hpy188III TCNNGA 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 6
Kzo9I GATC 4 cut(s) 9, 36, 41, 48
LpnPI CCDG 4 cut(s) 16, 83, 114, 132
MalI GATC 4 cut(s) 11, 38, 43, 50
MboI GATC 4 cut(s) 9, 36, 41, 48
MboII GAAGA 1 cut(s) 4
MflI RGATCY 2 cut(s) 9, 48
MnlI CCTC 5 cut(s) 66, 68, 77, 160, 163
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeII GATC 4 cut(s) 9, 36, 41, 48
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PkrI GCNGC 1 cut(s) 160
PsuI RGATCY 2 cut(s) 9, 48
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 4 cut(s) 9, 36, 41, 48
SetI ASST 1 cut(s) 103
SgeI CNNG 8 cut(s) 28, 43, 71, 82, 93, 113, 131, 141
SsiI CCGC 2 cut(s) 130, 159
TaqI TCGA 2 cut(s) 60, 115
TauI GCSGC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.