Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019236

Physical Location & Seq

Genomic Coordinates Forward (+)

1290300 .. 1290620

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG016700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCTCAGATCTTCGAGCACTTTGTCATCTGCGGGATCGGACCGGAGATCCAAACCCTCAACGGCGCCAGAGGCTTCCACGGCTTTGCCGAAATGTACATGTCGTCTTTGCTCGACCAATTCCCTCCCGCCATCTTCGAGCACTTTGTCATCTGCGGGATCAGACCAGAGATCCAAACCCTCAACGGCGCCAGAGGCTTCCACGGCTTTGCCGAAATGTACCTGTCGTCTTTGCTCGACCAGTTCCCTTTAGCCAATTTCATTTGTGGTTTTTCAATGTGTGTTGCCGGCTGGCGTTTCGTTCTACTCCTTAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

106

Amino Acids

11.92

Weight (kDa)

5.68

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0019236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12390 FvH4_5g12410
malus_domestica	MD06G1214100.v1.1
rosa_multiflora	Rmu_ssc0000482.1_g000018
rosa_roxburghii	Rroxscaffold_3G00232330
rosa_rugosa	Rorug06G0033100 Rorug07G0110400
rosa_samantha	Rh5DG016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 188
AciI	CCGC	3 cut(s)	33, 129, 156
AclWI	GGATC	4 cut(s)	43, 44, 166, 167
AcyI	GRCGYC	2 cut(s)	66, 189
AfaI	GTAC	2 cut(s)	98, 221
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	276
Alw21I	GWGCWC	2 cut(s)	21, 144
AlwI	GGATC	4 cut(s)	43, 44, 166, 167
AspLEI	GCGC	2 cut(s)	68, 191
AspS9I	GGNCC	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	311
BanI	GGYRCC	2 cut(s)	65, 188
Bbv12I	GWGCWC	2 cut(s)	21, 144
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	4 cut(s)	79, 97, 202, 220
BfoI	RGCGCY	2 cut(s)	69, 192
BglII	AGATCT	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	67, 190
BsaHI	GRCGYC	2 cut(s)	66, 189
BsaJI	CCNNGG	2 cut(s)	79, 202
BsaWI	WCCGGW	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	79, 202
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	241
BshNI	GGYRCC	2 cut(s)	65, 188
BsiHKAI	GWGCWC	2 cut(s)	21, 144
BsiSI	CCGG	2 cut(s)	44, 288
Bsp1286I	GDGCHC	2 cut(s)	21, 144
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	5 cut(s)	9, 36, 48, 159, 171
BspACI	CCGC	3 cut(s)	33, 129, 156
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	67, 190
BspPI	GGATC	4 cut(s)	43, 44, 166, 167
BspT107I	GGYRCC	2 cut(s)	65, 188
BsrFI	RCCGGY	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	79, 202
BssMI	GATC	5 cut(s)	9, 36, 48, 159, 171
BssNI	GRCGYC	2 cut(s)	66, 189
BstACI	GRCGYC	2 cut(s)	66, 189
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	289, 293
BstDEI	CTNAG	2 cut(s)	6, 311
BstDSI	CCRYGG	2 cut(s)	79, 202
BstH2I	RGCGCY	2 cut(s)	69, 192
BstHHI	GCGC	2 cut(s)	68, 191
BstKTI	GATC	5 cut(s)	12, 39, 51, 162, 174
BstMBI	GATC	5 cut(s)	9, 36, 48, 159, 171
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 81, 195, 204
BstNSI	RCATGY	1 cut(s)	103
BstX2I	RGATCY	3 cut(s)	9, 48, 171
BstYI	RGATCY	3 cut(s)	9, 48, 171
Bsu36I	CCTNAGG	1 cut(s)	311
BtgI	CCRYGG	2 cut(s)	79, 202
Cac8I	GCNNGC	2 cut(s)	289, 293
CfoI	GCGC	2 cut(s)	68, 191
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	41
CpoI	CGGWCCG	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	97, 220
CspI	CGGWCCG	1 cut(s)	41
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	7 cut(s)	5, 75, 84, 198, 207, 254, 291
CviKI_1	RGCY	7 cut(s)	5, 75, 84, 198, 207, 254, 291
CviQI	GTAC	2 cut(s)	97, 220
DdeI	CTNAG	2 cut(s)	6, 311
DinI	GGCGCC	2 cut(s)	67, 190
DpnI	GATC	5 cut(s)	11, 38, 50, 161, 173
DpnII	GATC	5 cut(s)	9, 36, 48, 159, 171
Eco47I	GGWCC	1 cut(s)	41
Eco81I	CCTNAGG	1 cut(s)	311
EgeI	GGCGCC	2 cut(s)	67, 190
EheI	GGCGCC	2 cut(s)	67, 190
FaeI	CATG	1 cut(s)	103
FaiI	YATR	1 cut(s)	101
FatI	CATG	1 cut(s)	99
FauI	CCCGC	3 cut(s)	26, 136, 149
GlaI	GCGC	2 cut(s)	67, 190
HaeII	RGCGCY	2 cut(s)	69, 192
HapII	CCGG	2 cut(s)	44, 288
HhaI	GCGC	2 cut(s)	68, 191
Hin1I	GRCGYC	2 cut(s)	66, 189
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	2 cut(s)	66, 189
HinP1I	GCGC	2 cut(s)	66, 189
HpaII	CCGG	2 cut(s)	44, 288
Hpy188I	TCNGA	3 cut(s)	9, 41, 164
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 81, 195, 204
HpyF3I	CTNAG	2 cut(s)	6, 311
Hsp92I	GRCGYC	2 cut(s)	66, 189
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	2 cut(s)	66, 189
KasI	GGCGCC	2 cut(s)	65, 188
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	9, 36, 48, 159, 171
LpnPI	CCDG	8 cut(s)	57, 82, 180, 205, 236, 254, 277, 301
MalI	GATC	5 cut(s)	11, 38, 50, 161, 173
MboI	GATC	5 cut(s)	9, 36, 48, 159, 171
MboII	GAAGA	2 cut(s)	4, 127
MflI	RGATCY	3 cut(s)	9, 48, 171
MhlI	GDGCHC	2 cut(s)	21, 144
MluCI	AATT	2 cut(s)	119, 256
Mly113I	GGCGCC	2 cut(s)	66, 189
MnlI	CCTC	5 cut(s)	65, 68, 135, 188, 191
MroNI	GCCGGC	1 cut(s)	287
MspI	CCGG	2 cut(s)	44, 288
MwoI	GCNNNNNNNGC	4 cut(s)	72, 81, 195, 204
NaeI	GCCGGC	1 cut(s)	289
NarI	GGCGCC	2 cut(s)	66, 189
NdeII	GATC	5 cut(s)	9, 36, 48, 159, 171
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	67, 190
NspI	RCATGY	1 cut(s)	103
PciI	ACATGT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 210
PdiI	GCCGGC	1 cut(s)	289
PluTI	GGCGCC	2 cut(s)	69, 192
PscI	ACATGT	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	67, 190
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	3 cut(s)	9, 48, 171
RsaI	GTAC	2 cut(s)	98, 221
RsaNI	GTAC	2 cut(s)	97, 220
Rsr2I	CGGWCCG	1 cut(s)	41
RsrII	CGGWCCG	1 cut(s)	41
Sau3AI	GATC	5 cut(s)	9, 36, 48, 159, 171
Sau96I	GGNCC	1 cut(s)	41
SduI	GDGCHC	2 cut(s)	21, 144
SetI	ASST	1 cut(s)	225
SfoI	GGCGCC	2 cut(s)	67, 190
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	2 cut(s)	119, 256
SsiI	CCGC	3 cut(s)	33, 129, 156
SspDI	GGCGCC	2 cut(s)	65, 188
TaqI	TCGA	4 cut(s)	15, 114, 138, 237
TasI	AATT	2 cut(s)	119, 256
TatI	WGTACW	1 cut(s)	96
TspDTI	ATGAA	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	41
XceI	RCATGY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.