FvH4_5g13790

exocyst complex component

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
7793883 .. 7795843
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13790.t1

Sequence Viewer

Length: 1833 bp
ATGATGGATTTGGAGTCTCAATTGTCTGCCATTGTAGCAATCCCTCAAAGCAATGCACAAGCACTGTCCGAGTTCGACAAGCAGCTCAAGAAAGCGGAGGAAAAATTTGTTCGTTGGGAATCGAGGGATTTGATGATATGGGATTCAAGTCCGGTGGAGGCTTCAAAGTACCTGAAAGGCATTGAAGAGATACAAAGCTTGATTGAAACTATCGGAGGCTTGTCAGCGGATGAGTATGGTAAGAAGAAGAAGAACCTTCTTTACAGGGCAAATAGTGTGTTGAAGTTGGCAATGTCAAGACTAGAGGATGAGCTAATCCAAATTCTCCTTCAGTACAAGCAATGCGCCGATCCAGGTCACATGTCTTTTCGTTTGTTTGGAGTTGATCAAATAGGGTATGATAGCTTCTCACTTCCTTCAATCGATGAAAGATCGAGTGAGCTATCATCGGAGAAGAATAATAATAGCAATGAATCAGAGGATTATGTGGTGGATCTGGTGCATCCTCTAGGAATACCTCATATTAAGTCCATTGCAAATGTTATGTTTGCTTCAAATTTTGGGGATGAGTTCTGCCATGCTTTTGTCAATATGAGGAAGGACGCTTTTAATGAGTACTTGTTCGATGTTCTTGGCTGGCAAAAATTCAGCATAGAAGATGTGCACATGATGGAGTGGACAAGCTTGAACTCGGAGATGAAGAAATGGAATTGGATAATGAAGATCGTCGTGCGTGTCTGTCTTGCTAGTGAGAAGCGTCTATGTGAAAAGATTTTAGGGGAGTTTGGATCTTTTAGCTCATTTTGCTTTCTTGAAACAACAATGGATACAATGGGGTGCCTTTTGAATTTTGGTGTTGCCATAGCCATAGGGGCTCGTAGTCCGGAGAAATTATTTTCATTTCTCGACATGTATGATGTTCTTGCAAATCTTCGAAGTTATATAGATGCTTTGTTCACAGAAGATGCAGGATGTGTCATAAGAAACCAATTTCATGAGATAGTGAAGAGCTTAGGAAATTTGGCAAAGACAACGTTTGTGGATTTTGGAAATGTCATTGCTTCCAACACATCAGCAAGTCCTTTCTCTGGTGGTGGTATTCATCCTCTCATTCGGTATGTCATGAACTTCATTAAGACTGTTACTGACTACAGTGATACACTTAACTTGCTTCTCAAGGATCAACACATGGAAGGATCAGCTGCTGAAATTAAGTTTGAAGATCAGAAATGCATTTCCCCTTTGACCCTCTCTCCGACATCTGTCCATGTTCTGTCAATTATTGGGATCCTAAAATCAAACCTTGAGAGCAGATCCAAATTGTACCACAATGAGGCTCTACAACATGTTTTCATGATGAACAATCTCCATTACATGGTTCAGAAGATCAAGAACACCAGACTCGAGATTCTTTTTGGAGATGAATGGATAAGAACACAGAAGAGTAAAGTGCAGCAACATGTTAAAGATTATGTGAGAGCTACTTGGAGTTCAGCCGTTTCCTTGTTAAGAGATGATATTCGAGTGCCACATTTTCTCTCAAAGAAAAGTTCTAAAAATAGGCTCAAGGCTTTCACTGTTGCTTTTGAGGAGGTATACAAGATACAGACAGGATGGTATGTACCAGATCATGAGCTTCGGGAAGACCTACAAATTTCAACTTCACAGAATGTAATCCATGCTTATCGGAATTTTGTCGAGAGGGTCTCTGTAAAATATAAGATCACCGACAAGTACATGAAGTACACTGTTGATGACATGGAGGAGCATCTTCTTGATCTATTCGAAGGGTCACCGAGATTATTAAACAAAGCATCTACATGCAGGAAGTGA

Protein Analysis

611

Amino Acids

69.93

Weight (kDa)

6.06

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_N PF20669 29 - 110 7.7e-09 Exocyst complex component Exo70 N-terminal
Exo70_C PF03081 234 - 593 4.9e-108 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61010 AT5G61010
fragaria_vesca FvH4_5g13790
prunus_persica Prupe.5G205500_v2.0.a1
rosa_laevigata RLG00000005074
rosa_multiflora Rmu_ssc0000111.1_g000012
rosa_rugosa Rorug06G0453800
rosa_samantha Rh7BG055900 Rh7BG056000 Rh7DG056200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 837
AccB7I CCANNNNNTGG 1 cut(s) 1375
AccI GTMKAC 1 cut(s) 1596
AccIII TCCGGA 1 cut(s) 883
AciI CCGC 2 cut(s) 95, 227
AclI AACGTT 1 cut(s) 1034
AclWI GGATC 8 cut(s) 344, 501, 796, 1188, 1204, 1282, 1295, 1308
AcsI RAATTY 8 cut(s) 104, 321, 556, 644, 847, 1018, 1653, 1690
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 7 cut(s) 170, 335, 617, 1325, 1623, 1736, 1745
AfiI CCNNNNNNNGG 3 cut(s) 1088, 1333, 1375
AflIII ACRYGT 4 cut(s) 360, 909, 1345, 1459
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 2 cut(s) 21, 1711
Alw44I GTGCAC 1 cut(s) 662
AlwI GGATC 8 cut(s) 344, 501, 796, 1188, 1204, 1282, 1295, 1308
AlwNI CAGNNNCTG 1 cut(s) 1205
Ama87I CYCGRG 1 cut(s) 1403
Aor13HI TCCGGA 1 cut(s) 883
ApaLI GTGCAC 1 cut(s) 662
ApeKI GCWGC 3 cut(s) 82, 1202, 1453
ApoI RAATTY 8 cut(s) 104, 321, 556, 644, 847, 1018, 1653, 1690
AspLEI GCGC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 1717, 1785
AsuII TTCGAA 2 cut(s) 934, 1785
AvaI CYCGRG 1 cut(s) 1403
BaeGI GKGCMC 1 cut(s) 666
BamHI GGATCC 1 cut(s) 1287
BanI GGYRCC 1 cut(s) 837
BanII GRGCYC 1 cut(s) 877
BarI GAAGNNNNNNTAC 2 cut(s) 389, 421
BbsI GAAGAC 1 cut(s) 1650
Bbv12I GWGCWC 1 cut(s) 666
BbvI GCAGC 3 cut(s) 94, 1189, 1465
BccI CCATC 2 cut(s) 664, 1608
BceAI ACGGC 1 cut(s) 1481
BciT130I CCWGG 1 cut(s) 354
BciVI GTATCC 1 cut(s) 820
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 21, 1711
BfaI CTAG 3 cut(s) 302, 509, 747
BfmI CTRYAG 1 cut(s) 1150
BfuI GTATCC 1 cut(s) 820
BglI GCCNNNNNGGC 1 cut(s) 872
BisI GCNGC 3 cut(s) 83, 1203, 1454
BlsI GCNGC 3 cut(s) 84, 1204, 1455
BmcAI AGTACT 1 cut(s) 617
Bme1390I CCNGG 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 1403
BmiI GGNNCC 2 cut(s) 839, 1289
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 5 cut(s) 511, 937, 955, 1777, 1823
BoxI GACNNNNGTC 1 cut(s) 1262
BpiI GAAGAC 1 cut(s) 1650
BplI GAGNNNNNCTC 2 cut(s) 1691, 1723
Bpu10I CCTNAGC 1 cut(s) 1012
Bpu14I TTCGAA 2 cut(s) 934, 1785
BpuEI CTTGAG 4 cut(s) 71, 1160, 1325, 1550
Bsa29I ATCGAT 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 1711
BsaWI WCCGGW 2 cut(s) 151, 883
BsaXI ACNNNNNCTCC 2 cut(s) 1237, 1267
Bsc4I CCNNNNNNNGG 3 cut(s) 1088, 1333, 1375
Bse3DI GCAATG 6 cut(s) 58, 297, 347, 475, 531, 1056
BseAI TCCGGA 1 cut(s) 883
BseBI CCWGG 1 cut(s) 354
BseCI ATCGAT 1 cut(s) 423
BseGI GGATG 7 cut(s) 235, 313, 502, 571, 977, 1102, 1619
BseLI CCNNNNNNNGG 3 cut(s) 1088, 1333, 1375
BseMI GCAATG 6 cut(s) 58, 297, 347, 475, 531, 1056
BseRI GAGGAG 2 cut(s) 1604, 1778
BseSI GKGCMC 1 cut(s) 666
BseXI GCAGC 3 cut(s) 94, 1189, 1465
BsgI GTGCAG 1 cut(s) 1472
BshNI GGYRCC 1 cut(s) 837
BshVI ATCGAT 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 666
BsiHKCI CYCGRG 1 cut(s) 1403
BsiSI CCGG 2 cut(s) 152, 884
BslI CCNNNNNNNGG 3 cut(s) 1088, 1333, 1375
BsmAI GTCTC 2 cut(s) 21, 1711
Bso31I GGTCTC 1 cut(s) 1711
BsoBI CYCGRG 1 cut(s) 1403
Bsp119I TTCGAA 2 cut(s) 934, 1785
Bsp1286I GDGCHC 2 cut(s) 666, 877
Bsp13I TCCGGA 1 cut(s) 883
BspACI CCGC 2 cut(s) 95, 227
BspDI ATCGAT 1 cut(s) 423
BspEI TCCGGA 1 cut(s) 883
BspHI TCATGA 4 cut(s) 994, 1122, 1353, 1630
BspLI GGNNCC 2 cut(s) 839, 1289
BspPI GGATC 8 cut(s) 344, 501, 796, 1188, 1204, 1282, 1295, 1308
BspQI GCTCTTC 1 cut(s) 1001
BspT104I TTCGAA 2 cut(s) 934, 1785
BspT107I GGYRCC 1 cut(s) 837
BspTNI GGTCTC 1 cut(s) 1711
BsrDI GCAATG 6 cut(s) 58, 297, 347, 475, 531, 1056
BssNAI GTATAC 1 cut(s) 1597
Bst1107I GTATAC 1 cut(s) 1597
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 5 cut(s) 66, 1141, 1154, 1579, 1750
Bst6I CTCTTC 3 cut(s) 180, 1001, 1436
BstBI TTCGAA 2 cut(s) 934, 1785
BstC8I GCNNGC 1 cut(s) 638
BstDEI CTNAG 1 cut(s) 1012
BstEII GGTNACC 1 cut(s) 1791
BstF5I GGATG 7 cut(s) 235, 313, 502, 571, 977, 1102, 1619
BstHHI GCGC 1 cut(s) 347
BstMAI GTCTC 2 cut(s) 21, 1711
BstMWI GCNNNNNNNGC 3 cut(s) 35, 804, 872
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 5 cut(s) 364, 913, 1349, 1463, 1824
BstPAI GACNNNNGTC 1 cut(s) 1262
BstPI GGTNACC 1 cut(s) 1791
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 1150
BstSLI GKGCMC 1 cut(s) 666
BstV1I GCAGC 3 cut(s) 94, 1189, 1465
BstV2I GAAGAC 1 cut(s) 1650
BstX2I RGATCY 4 cut(s) 493, 788, 1287, 1313
BstYI RGATCY 4 cut(s) 493, 788, 1287, 1313
BstZ17I GTATAC 1 cut(s) 1597
Bsu15I ATCGAT 1 cut(s) 423
BsuI GTATCC 1 cut(s) 820
BsuTUI ATCGAT 1 cut(s) 423
BtsCI GGATG 7 cut(s) 235, 313, 502, 571, 977, 1102, 1619
BtsIMutI CAGTG 4 cut(s) 62, 1159, 1575, 1746
Cac8I GCNNGC 1 cut(s) 638
CaiI CAGNNNCTG 1 cut(s) 1205
CciI TCATGA 4 cut(s) 994, 1122, 1353, 1630
CfoI GCGC 1 cut(s) 347
ClaI ATCGAT 1 cut(s) 423
CseI GACGC 2 cut(s) 611, 746
Csp6I GTAC 7 cut(s) 169, 334, 616, 1324, 1622, 1735, 1744
CspCI CAANNNNNGTGG 4 cut(s) 135, 170, 1020, 1055
CviQI GTAC 7 cut(s) 169, 334, 616, 1324, 1622, 1735, 1744
DdeI CTNAG 1 cut(s) 1012
Eam1104I CTCTTC 3 cut(s) 180, 1001, 1436
EarI CTCTTC 3 cut(s) 180, 1001, 1436
Eco24I GRGCYC 1 cut(s) 877
Eco31I GGTCTC 1 cut(s) 1711
Eco57I CTGAAG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 1403
Eco91I GGTNACC 1 cut(s) 1791
EcoO65I GGTNACC 1 cut(s) 1791
EcoRII CCWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 1235
EcoT38I GRGCYC 1 cut(s) 877
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 1596
Fnu4HI GCNGC 3 cut(s) 83, 1203, 1454
FokI GGATG 7 cut(s) 242, 320, 489, 578, 984, 1089, 1626
FriOI GRGCYC 1 cut(s) 877
Fsp4HI GCNGC 3 cut(s) 83, 1203, 1454
FspBI CTAG 3 cut(s) 302, 509, 747
GlaI GCGC 1 cut(s) 346
GluI GCNGC 3 cut(s) 83, 1203, 1454
HapII CCGG 2 cut(s) 152, 884
HgaI GACGC 2 cut(s) 611, 746
HhaI GCGC 1 cut(s) 347
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HindIII AAGCTT 2 cut(s) 196, 682
HinfI GANTC 6 cut(s) 14, 119, 143, 473, 1401, 1408
HpaII CCGG 2 cut(s) 152, 884
HphI GGTGA 2 cut(s) 1717, 1785
Hpy166II GTNNAC 5 cut(s) 664, 678, 957, 1597, 1746
Hpy188I TCNGA 9 cut(s) 70, 215, 451, 478, 694, 1227, 1257, 1383, 1689
Hpy8I GTNNAC 5 cut(s) 664, 678, 957, 1597, 1746
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 6 cut(s) 266, 338, 426, 592, 1187, 1781
HpyCH4III ACNGT 5 cut(s) 66, 1141, 1154, 1579, 1750
HpyCH4IV ACGT 1 cut(s) 1034
HpyCH4V TGCA 9 cut(s) 56, 502, 536, 664, 926, 968, 1233, 1453, 1824
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 804, 872
HpyF3I CTNAG 1 cut(s) 1012
HpySE526I ACGT 1 cut(s) 1034
HspAI GCGC 1 cut(s) 345
Kpn2I TCCGGA 1 cut(s) 883
Ksp22I TGATCA 1 cut(s) 385
LguI GCTCTTC 1 cut(s) 1001
LmnI GCTCC 1 cut(s) 1765
Lsp1109I GCAGC 3 cut(s) 94, 1189, 1465
LweI GCATC 5 cut(s) 511, 937, 955, 1777, 1823
MaeI CTAG 3 cut(s) 302, 509, 747
MaeII ACGT 1 cut(s) 1034
MaeIII GTNAC 3 cut(s) 356, 1141, 1791
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 4 cut(s) 493, 788, 1287, 1313
MhlI GDGCHC 2 cut(s) 666, 877
MlyI GAGTC 2 cut(s) 23, 1395
MmeI TCCRAC 2 cut(s) 1089, 1280
Mph1103I ATGCAT 1 cut(s) 1235
MroI TCCGGA 1 cut(s) 883
MseI TTAA 8 cut(s) 525, 609, 1134, 1164, 1212, 1464, 1508, 1805
MslI CAYNNNNRTG 1 cut(s) 1819
MspA1I CMGCKG 2 cut(s) 227, 1202
MspI CCGG 2 cut(s) 152, 884
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 35, 804, 872
NlaIV GGNNCC 2 cut(s) 839, 1289
NmuCI GTSAC 2 cut(s) 356, 1791
NsiI ATGCAT 1 cut(s) 1235
NspI RCATGY 5 cut(s) 364, 913, 1349, 1463, 1824
NspV TTCGAA 2 cut(s) 934, 1785
PaeR7I CTCGAG 1 cut(s) 1403
PagI TCATGA 4 cut(s) 994, 1122, 1353, 1630
PciI ACATGT 4 cut(s) 360, 909, 1345, 1459
PciSI GCTCTTC 1 cut(s) 1001
PfeI GAWTC 4 cut(s) 119, 143, 473, 1408
PflMI CCANNNNNTGG 1 cut(s) 1375
PkrI GCNGC 3 cut(s) 84, 1204, 1455
PleI GAGTC 2 cut(s) 22, 1395
PpsI GAGTC 2 cut(s) 22, 1395
PscI ACATGT 4 cut(s) 360, 909, 1345, 1459
PshAI GACNNNNGTC 1 cut(s) 1262
Psp1406I AACGTT 1 cut(s) 1034
Psp6I CCWGG 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 1791
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 839, 1289
PsrI GAACNNNNNNTAC 2 cut(s) 245, 277
PstNI CAGNNNCTG 1 cut(s) 1205
PsuI RGATCY 4 cut(s) 493, 788, 1287, 1313
PvuII CAGCTG 1 cut(s) 1202
RsaI GTAC 7 cut(s) 170, 335, 617, 1325, 1623, 1736, 1745
RsaNI GTAC 7 cut(s) 169, 334, 616, 1324, 1622, 1735, 1744
RseI CAYNNNNRTG 1 cut(s) 1819
SapI GCTCTTC 1 cut(s) 1001
SaqAI TTAA 8 cut(s) 525, 609, 1134, 1164, 1212, 1464, 1508, 1805
SatI GCNGC 3 cut(s) 83, 1203, 1454
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 2 cut(s) 23, 1395
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 666, 877
SfaNI GCATC 5 cut(s) 511, 937, 955, 1777, 1823
SfcI CTRYAG 1 cut(s) 1150
Sfr274I CTCGAG 1 cut(s) 1403
SfuI TTCGAA 2 cut(s) 934, 1785
SlaI CTCGAG 1 cut(s) 1403
SmiMI CAYNNNNRTG 1 cut(s) 1819
SmlI CTYRAG 5 cut(s) 86, 1175, 1304, 1403, 1565
SmoI CTYRAG 5 cut(s) 86, 1175, 1304, 1403, 1565
SsiI CCGC 2 cut(s) 95, 227
SspMI CTAG 3 cut(s) 302, 509, 747
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 5 cut(s) 66, 1141, 1154, 1579, 1750
TaiI ACGT 1 cut(s) 1037
TatI WGTACW 4 cut(s) 333, 615, 1734, 1743
TfiI GAWTC 4 cut(s) 119, 143, 473, 1408
Tru1I TTAA 8 cut(s) 525, 609, 1134, 1164, 1212, 1464, 1508, 1805
Tru9I TTAA 8 cut(s) 525, 609, 1134, 1164, 1212, 1464, 1508, 1805
TscAI CASTG 4 cut(s) 69, 1159, 1582, 1753
TseFI GTSAC 2 cut(s) 356, 1791
TseI GCWGC 3 cut(s) 82, 1202, 1453
Tsp45I GTSAC 2 cut(s) 356, 1791
TspRI CASTG 4 cut(s) 69, 1159, 1582, 1753
Van91I CCANNNNNTGG 1 cut(s) 1375
VneI GTGCAC 1 cut(s) 662
XapI RAATTY 8 cut(s) 104, 321, 556, 644, 847, 1018, 1653, 1690
XceI RCATGY 5 cut(s) 364, 913, 1349, 1463, 1824
XhoI CTCGAG 1 cut(s) 1403
XmiI GTMKAC 1 cut(s) 1596
XspI CTAG 3 cut(s) 302, 509, 747
ZrmI AGTACT 1 cut(s) 617
Zsp2I ATGCAT 1 cut(s) 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.