RLG00000005074

exocyst complex component

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
64834687 .. 64836774
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005074

Sequence Viewer

Length: 1620 bp
ATGGCACCAAAGACCGCAATATTCATTTCTTCTTTAGCATCACTTGTTAACACGGCGGATCACATTTCTCTCACTCCAATCATTGAAGAAGATGAAGGGGAAGTAGAAGATCACCATGTTCTTGCACCTAGGCAAATCATAAGGAATTGCCTGACGGATGCTTTGAAGAAAACCTTGCCTGATGAGCATGGGAAGCCGAAGAAGGACCTGCTTTACCGGGCAAATAGTGTGTTGCAGTTGGCATTGTCAAGGCTAGAGGAGGAGCTAGTCCGAATTCTCCTTCAGTACAAGCAATGTGTCGATCCAGGTCCCATGTCTTTTCGTTTGTTTGGAGCAGATCAAGTAGTTGAGGTATCGTCGGAGAGAAATAGTAATAGCAATGAATCGGAGGATTATGTGGTGGATTTGGTGCATCCACTTGGAATGCCTCATCTCAAGTCCATTGCAAATGTTATGTTCACTTCGAATTATGGGGATGAATTTTGCCAAGCCTTTATCAACACGAGGAAGGAAGCTTTCAATGAGTATTTGTTGGATGTTCTTGGTCGGCAGAAATTCAGCATTGAAGATGTGCATAAGATGGAGTGGACAAACTTGAACTCGGAGATAAAGAAATGGAATTGGTTGCTGAAGATCGTCGTGCGGGTCTATCTTGCTAGTGAGAAGCGTCTATGTGCAAAGATTTTGGCGGAGTTTGGATCTTTTAGCTCATTTTGCTTTCTTGAAACAACGATGGATACAATGGGGTGCCTCTTGAATTTTGGTAAATTATTTTCATTTCTCGACATGTATAATGTTCTTGCAAATCTTCGAAATTATATAGATGCTTTGTTCATAGAAGATGCTGGATGTGTCATAAGAAACCAATTCCTTGAGATTCTGAAGAGCTTAGGAAATTTGGCAAAGACAACTTTTGTGGACTTTGGGAATGTCATTGCTTCCAACACATCAGCAAATCCATTCTCTGGTGGTGGTATTCATCCCCTCACTCGGTATGTCATGAACTTTATTAAGACTATTACTGACTATGGTGATACACTTAACTTGCTTCTCAAGGATCAACACATAGAAGGATCAATTACAGAAATTGAGTTTGAAGATAAGAAAGGCAGTTCATCGTCGACGCTCACTCCAATATCTCTTCATGTCAATTACTGGGATTCTAAAATCAAATCTCGAGAACGATCCAAATTGTACAACGATGAGGCTTTACAGCATGTTTTCATGATGAACAATCTCCACTACATGGTGGAGAAGATCAAGAACACCAAACTCGAGCTTCTTTTTGGAGATGAATGGATAAGAACACAAAAGTCCAGCAACATGTTAAAGATTATGTGCAAGGCTTTGACTAATGCTTTTGAGGAGGTTTACAGGACACAGACAGGATGGTACGTACCAGATCTTGAGCTTGATCTTGAGCTTCGGGAAGACCTACAAATTTCAACTTCACAGAATGTAATCCCTGCATATCGTAATTTTGTCGAGAGAGTCTCTGTAAAGTTTAAGATCACTGACAAGTACATGAAGTACACTGTTGATGATCTGGAGAAGCATCTTCTTGATCTATTTGAAGGGTCGCCGAGATTATTAAACAAATCATTTACGTGTAGGAAGTGA

Protein Analysis

540

Amino Acids

61.94

Weight (kDa)

5.73

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 204 - 438 2.2e-53 Exo70 exocyst complex subunit C-terminal
Exo70_C PF03081 438 - 522 1.2e-19 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61010 AT5G61010
fragaria_vesca FvH4_5g13790
prunus_persica Prupe.5G205500_v2.0.a1
rosa_laevigata RLG00000005074
rosa_multiflora Rmu_ssc0000111.1_g000012
rosa_rugosa Rorug06G0453800
rosa_samantha Rh7BG055900 Rh7BG056000 Rh7DG056200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 216
AccB1I GGYRCC 2 cut(s) 4, 747
AccB7I CCANNNNNTGG 2 cut(s) 965, 1246
AccI GTMKAC 1 cut(s) 1121
AciI CCGC 4 cut(s) 15, 56, 643, 689
AclWI GGATC 6 cut(s) 66, 296, 706, 1065, 1081, 1179
AcsI RAATTY 6 cut(s) 273, 479, 554, 757, 895, 1440
AcuI CTGAAG 3 cut(s) 266, 650, 902
AfaI GTAC 6 cut(s) 287, 1196, 1394, 1398, 1523, 1532
AfiI CCNNNNNNNGG 3 cut(s) 965, 990, 1246
AflIII ACRYGT 3 cut(s) 786, 1323, 1607
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 7 cut(s) 265, 515, 708, 888, 1279, 1411, 1423
AluI AGCT 7 cut(s) 265, 515, 708, 888, 1279, 1411, 1423
Alw26I GTCTC 1 cut(s) 1498
AlwI GGATC 6 cut(s) 66, 296, 706, 1065, 1081, 1179
Ama87I CYCGRG 2 cut(s) 1176, 1274
ApoI RAATTY 6 cut(s) 273, 479, 554, 757, 895, 1440
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
AspA2I CCTAGG 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 205, 308
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 104, 1043
AsuII TTCGAA 2 cut(s) 464, 811
AvaI CYCGRG 2 cut(s) 1176, 1274
AvaII GGWCC 2 cut(s) 205, 308
AvrII CCTAGG 1 cut(s) 128
BanI GGYRCC 2 cut(s) 4, 747
BauI CACGAG 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 1437
BccI CCATC 3 cut(s) 574, 727, 1383
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 730
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 1498
BfaI CTAG 4 cut(s) 129, 254, 266, 657
BfuAI ACCTGC 1 cut(s) 216
BfuI GTATCC 1 cut(s) 730
BglII AGATCT 1 cut(s) 1402
BlnI CCTAGG 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 218, 306
Bme18I GGWCC 2 cut(s) 205, 308
BmeT110I CYCGRG 2 cut(s) 1176, 1274
BmgT120I GGNCC 2 cut(s) 205, 308
BmiI GGNNCC 3 cut(s) 6, 310, 749
BmrFI CCNGG 2 cut(s) 218, 306
BmrI ACTGGG 1 cut(s) 1165
BmsI GCATC 6 cut(s) 47, 148, 421, 814, 832, 1564
BmuI ACTGGG 1 cut(s) 1165
BpiI GAAGAC 1 cut(s) 1437
BplI GAGNNNNNCTC 2 cut(s) 1478, 1510
BpmI CTGGAG 1 cut(s) 1568
Bpu10I CCTNAGC 1 cut(s) 889
Bpu14I TTCGAA 2 cut(s) 464, 811
BpuEI CTTGAG 5 cut(s) 419, 893, 1037, 1427, 1439
BpuMI CCSGG 1 cut(s) 218
BsaAI YACGTR 2 cut(s) 1396, 1608
BsaJI CCNNGG 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 1114, 1144
Bsc4I CCNNNNNNNGG 3 cut(s) 965, 990, 1246
Bse1I ACTGG 1 cut(s) 1160
Bse3DI GCAATG 4 cut(s) 299, 385, 441, 933
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 7 cut(s) 163, 412, 481, 541, 854, 979, 1394
BseLI CCNNNNNNNGG 3 cut(s) 965, 990, 1246
BseMI GCAATG 4 cut(s) 299, 385, 441, 933
BseNI ACTGG 1 cut(s) 1160
BseRI GAGGAG 3 cut(s) 272, 275, 1379
BshNI GGYRCC 2 cut(s) 4, 747
BsiHKCI CYCGRG 2 cut(s) 1176, 1274
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 3 cut(s) 965, 990, 1246
BsmAI GTCTC 1 cut(s) 1498
BsmFI GGGAC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 429
BsoBI CYCGRG 2 cut(s) 1176, 1274
Bsp119I TTCGAA 2 cut(s) 464, 811
Bsp1407I TGTACA 1 cut(s) 1194
BspACI CCGC 4 cut(s) 15, 56, 643, 689
BspHI TCATGA 2 cut(s) 999, 1224
BspLI GGNNCC 3 cut(s) 6, 310, 749
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 6 cut(s) 66, 296, 706, 1065, 1081, 1179
BspQI GCTCTTC 1 cut(s) 878
BspT104I TTCGAA 2 cut(s) 464, 811
BspT107I GGYRCC 2 cut(s) 4, 747
BsrDI GCAATG 4 cut(s) 299, 385, 441, 933
BsrGI TGTACA 1 cut(s) 1194
BsrI ACTGG 1 cut(s) 1160
BssECI CCNNGG 1 cut(s) 128
BssSI CACGAG 1 cut(s) 502
BssT1I CCWWGG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 1537
Bst6I CTCTTC 2 cut(s) 878, 1146
BstAUI TGTACA 1 cut(s) 1194
BstBAI YACGTR 2 cut(s) 1396, 1608
BstBI TTCGAA 2 cut(s) 464, 811
BstDEI CTNAG 1 cut(s) 889
BstF5I GGATG 7 cut(s) 163, 412, 481, 541, 854, 979, 1394
BstMAI GTCTC 1 cut(s) 1498
BstMWI GCNNNNNNNGC 3 cut(s) 184, 193, 714
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 3 cut(s) 790, 1220, 1327
BstSCI CCNGG 2 cut(s) 216, 304
BstSNI TACGTA 1 cut(s) 1396
BstV2I GAAGAC 1 cut(s) 1437
BstX2I RGATCY 2 cut(s) 698, 1402
BstYI RGATCY 2 cut(s) 698, 1402
BsuI GTATCC 1 cut(s) 730
BtsCI GGATG 7 cut(s) 163, 412, 481, 541, 854, 979, 1394
BtsIMutI CAGTG 2 cut(s) 1512, 1533
BveI ACCTGC 1 cut(s) 216
CciI TCATGA 2 cut(s) 999, 1224
Cfr13I GGNCC 2 cut(s) 205, 308
CseI GACGC 2 cut(s) 656, 1132
Csp6I GTAC 6 cut(s) 286, 1195, 1393, 1397, 1522, 1531
CspCI CAANNNNNGTGG 2 cut(s) 897, 932
CviQI GTAC 6 cut(s) 286, 1195, 1393, 1397, 1522, 1531
DdeI CTNAG 1 cut(s) 889
Eam1104I CTCTTC 2 cut(s) 878, 1146
EarI CTCTTC 2 cut(s) 878, 1146
EciI GGCGGA 2 cut(s) 71, 704
Eco105I TACGTA 1 cut(s) 1396
Eco130I CCWWGG 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 205, 308
Eco57I CTGAAG 3 cut(s) 266, 650, 902
Eco88I CYCGRG 2 cut(s) 1176, 1274
EcoO109I RGGNCCY 2 cut(s) 205, 308
EcoRI GAATTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 1 cut(s) 294
FauI CCCGC 1 cut(s) 636
FblI GTMKAC 1 cut(s) 1121
FokI GGATG 7 cut(s) 170, 399, 488, 548, 861, 966, 1401
FspBI CTAG 4 cut(s) 129, 254, 266, 657
GsuI CTGGAG 1 cut(s) 1568
HapII CCGG 1 cut(s) 217
HgaI GACGC 2 cut(s) 656, 1132
HincII GTYRAC 2 cut(s) 49, 1122
HindII GTYRAC 2 cut(s) 49, 1122
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 4 cut(s) 383, 877, 1160, 1491
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 1 cut(s) 217
HphI GGTGA 2 cut(s) 104, 1043
Hpy166II GTNNAC 7 cut(s) 49, 459, 588, 919, 1122, 1372, 1533
Hpy188I TCNGA 5 cut(s) 272, 361, 388, 604, 882
Hpy8I GTNNAC 7 cut(s) 49, 459, 588, 919, 1122, 1372, 1533
Hpy99I CGWCG 4 cut(s) 361, 641, 1123, 1126
HpyAV CCTTC 6 cut(s) 89, 196, 290, 502, 1064, 1568
HpyCH4III ACNGT 1 cut(s) 1537
HpyCH4IV ACGT 2 cut(s) 1395, 1607
HpyCH4V TGCA 9 cut(s) 125, 235, 412, 446, 574, 677, 803, 1341, 1469
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 193, 714
HpyF3I CTNAG 1 cut(s) 889
HpySE526I ACGT 2 cut(s) 1395, 1607
KspAI GTTAAC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 878
LmnI GCTCC 2 cut(s) 262, 332
LweI GCATC 6 cut(s) 47, 148, 421, 814, 832, 1564
MaeI CTAG 4 cut(s) 129, 254, 266, 657
MaeII ACGT 2 cut(s) 1395, 1607
MflI RGATCY 2 cut(s) 698, 1402
MlyI GAGTC 1 cut(s) 1500
MmeI TCCRAC 3 cut(s) 339, 513, 966
MseI TTAA 6 cut(s) 48, 1011, 1041, 1328, 1506, 1592
MslI CAYNNNNRTG 1 cut(s) 1606
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 2 cut(s) 218, 306
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 184, 193, 714
NciI CCSGG 1 cut(s) 218
NlaIV GGNNCC 3 cut(s) 6, 310, 749
NmeAIII GCCGAG 1 cut(s) 1608
NspI RCATGY 3 cut(s) 790, 1220, 1327
NspV TTCGAA 2 cut(s) 464, 811
PaeR7I CTCGAG 2 cut(s) 1176, 1274
PagI TCATGA 2 cut(s) 999, 1224
PciI ACATGT 2 cut(s) 786, 1323
PciSI GCTCTTC 1 cut(s) 878
PctI GAATGC 1 cut(s) 429
PfeI GAWTC 3 cut(s) 383, 877, 1160
PflMI CCANNNNNTGG 2 cut(s) 965, 1246
PleI GAGTC 1 cut(s) 1499
PpsI GAGTC 1 cut(s) 1499
Ppu21I YACGTR 2 cut(s) 1396, 1608
PpuMI RGGWCCY 2 cut(s) 205, 308
PscI ACATGT 2 cut(s) 786, 1323
Psp5II RGGWCCY 2 cut(s) 205, 308
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 3 cut(s) 6, 310, 749
PspPI GGNCC 2 cut(s) 205, 308
PspPPI RGGWCCY 2 cut(s) 205, 308
PspXI VCTCGAGB 1 cut(s) 1274
PsuI RGATCY 2 cut(s) 698, 1402
RsaI GTAC 6 cut(s) 287, 1196, 1394, 1398, 1523, 1532
RsaNI GTAC 6 cut(s) 286, 1195, 1393, 1397, 1522, 1531
RseI CAYNNNNRTG 1 cut(s) 1606
SalI GTCGAC 1 cut(s) 1120
SapI GCTCTTC 1 cut(s) 878
SaqAI TTAA 6 cut(s) 48, 1011, 1041, 1328, 1506, 1592
Sau96I GGNCC 2 cut(s) 205, 308
SchI GAGTC 1 cut(s) 1500
ScrFI CCNGG 2 cut(s) 218, 306
SfaNI GCATC 6 cut(s) 47, 148, 421, 814, 832, 1564
Sfr274I CTCGAG 2 cut(s) 1176, 1274
SfuI TTCGAA 2 cut(s) 464, 811
SgrDI CGTCGACG 1 cut(s) 1120
SinI GGWCC 2 cut(s) 205, 308
SlaI CTCGAG 2 cut(s) 1176, 1274
SmiMI CAYNNNNRTG 1 cut(s) 1606
SmlI CTYRAG 7 cut(s) 434, 872, 1052, 1176, 1274, 1406, 1418
SmoI CTYRAG 7 cut(s) 434, 872, 1052, 1176, 1274, 1406, 1418
SnaBI TACGTA 1 cut(s) 1396
SsiI CCGC 4 cut(s) 15, 56, 643, 689
SspI AATATT 1 cut(s) 21
SspMI CTAG 4 cut(s) 129, 254, 266, 657
StyD4I CCNGG 2 cut(s) 216, 304
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 1537
TaiI ACGT 2 cut(s) 1398, 1610
TaqI TCGA 8 cut(s) 300, 464, 783, 811, 1121, 1177, 1275, 1485
TatI WGTACW 4 cut(s) 285, 1194, 1521, 1530
TfiI GAWTC 3 cut(s) 383, 877, 1160
Tru1I TTAA 6 cut(s) 48, 1011, 1041, 1328, 1506, 1592
Tru9I TTAA 6 cut(s) 48, 1011, 1041, 1328, 1506, 1592
TscAI CASTG 2 cut(s) 1519, 1540
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 2 cut(s) 1519, 1540
Van91I CCANNNNNTGG 2 cut(s) 965, 1246
VpaK11BI GGWCC 2 cut(s) 205, 308
XapI RAATTY 6 cut(s) 273, 479, 554, 757, 895, 1440
XceI RCATGY 3 cut(s) 790, 1220, 1327
XhoI CTCGAG 2 cut(s) 1176, 1274
XmaJI CCTAGG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 1121
XspI CTAG 4 cut(s) 129, 254, 266, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.