Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018286

Physical Location & Seq

Genomic Coordinates Reverse (-)

3744595 .. 3745131

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG055900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTATAATGTTATTGCAAATCTTCGAAATTATATAGATGCTTTGTTCATAGAAGATGCTGGATGTGCCATAAGAAACCAATTCCATGAGATTCTGAAGAGCTTAGGAAATTTGGCAAAGACAACTTTTGTGGACTTTGGGAATGTCATTGCTTCCAACACATCAGCAAATCCATTCTCTGGTGGTGGTATTCATCCTCTCACTCGGTATGTCATGAACTTTATTAAGACTGTTACTGACTATGGTGATACACTTAACTTGCTTCTCAAGGATCAACACATAGAAGGATCAATTACAGAAATTGAGTTTGAAGATAAGAAAGGCAGTTCATCTTCGACGCTCACTCCAACATCTCTTCATGTCATGTCACTTACTGGGATTCTAAAATCAAATCTCGAGAACAGATCCACATTGTACAACGATGAGGCTTTACAGCATGTTTTCATGATGAACAATCTCCACTACATGGTGCAGAAGATCAAGAACACCAAACTCGAGCTTCTTTTTGGAGATGAATGGATAAGAACACAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0010638 GO:0016020 GO:0016192 GO:0031982 GO:0032386 GO:0032879 GO:0032880 GO:0032940 GO:0032991 GO:0033043 GO:0033157 GO:0043226 GO:0043227 GO:0043230 GO:0044087 GO:0044089 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051130 GO:0051179 GO:0051223 GO:0051234 GO:0060341 GO:0065007 GO:0070062 GO:0070201 GO:0071944 GO:0090087 GO:0099023 GO:0099568 GO:1902115 GO:1902117 GO:1903533 GO:1903551 GO:1903553 GO:1903561 GO:1903827

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

178

Amino Acids

20.1

Weight (kDa)

5.66

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	1 - 177	1.5e-50	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61010 AT5G61010
fragaria_vesca	FvH4_5g13790
prunus_persica	Prupe.5G205500_v2.0.a1
rosa_laevigata	RLG00000005074
rosa_multiflora	Rmu_ssc0000111.1_g000012
rosa_rugosa	Rorug06G0453800
rosa_samantha	Rh7BG055900 Rh7BG056000 Rh7DG056200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	179, 466
AclWI	GGATC	3 cut(s)	279, 295, 399
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	2 cut(s)	179, 466
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	2 cut(s)	102, 499
AluI	AGCT	2 cut(s)	102, 499
AlwI	GGATC	3 cut(s)	279, 295, 399
Ama87I	CYCGRG	2 cut(s)	395, 494
ApoI	RAATTY	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	25
AvaI	CYCGRG	2 cut(s)	395, 494
BmeT110I	CYCGRG	2 cut(s)	395, 494
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	28, 46
BmuI	ACTGGG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 466
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	68, 193
BseLI	CCNNNNNNNGG	2 cut(s)	179, 466
BseMI	GCAATG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	379
BsgI	GTGCAG	1 cut(s)	491
BsiHKCI	CYCGRG	2 cut(s)	395, 494
BslI	CCNNNNNNNGG	2 cut(s)	179, 466
BsoBI	CYCGRG	2 cut(s)	395, 494
Bsp119I	TTCGAA	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	271, 287, 404, 477
BspHI	TCATGA	2 cut(s)	213, 444
BspPI	GGATC	3 cut(s)	279, 295, 399
BspQI	GCTCTTC	1 cut(s)	92
BspT104I	TTCGAA	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	147
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	379
BssMI	GATC	4 cut(s)	271, 287, 404, 477
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	2 cut(s)	92, 360
BstAUI	TGTACA	1 cut(s)	414
BstBI	TTCGAA	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	68, 193
BstKTI	GATC	4 cut(s)	274, 290, 407, 480
BstMBI	GATC	4 cut(s)	271, 287, 404, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	68, 193
CciI	TCATGA	2 cut(s)	213, 444
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	7 cut(s)	86, 214, 359, 364, 437, 445, 466
CviJI	RGCY	3 cut(s)	102, 428, 499
CviKI_1	RGCY	3 cut(s)	102, 428, 499
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	4 cut(s)	273, 289, 406, 479
DpnII	GATC	4 cut(s)	271, 287, 404, 477
Eam1104I	CTCTTC	2 cut(s)	92, 360
EarI	CTCTTC	2 cut(s)	92, 360
Eco57I	CTGAAG	1 cut(s)	116
Eco88I	CYCGRG	2 cut(s)	395, 494
FaeI	CATG	7 cut(s)	89, 217, 362, 367, 440, 448, 469
FatI	CATG	7 cut(s)	85, 213, 358, 363, 436, 444, 465
FokI	GGATG	2 cut(s)	75, 180
HgaI	GACGC	1 cut(s)	346
Hin1II	CATG	7 cut(s)	89, 217, 362, 367, 440, 448, 469
HinfI	GANTC	2 cut(s)	91, 379
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	5 cut(s)	214, 395, 397, 445, 481
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	17, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	103
Hsp92II	CATG	7 cut(s)	89, 217, 362, 367, 440, 448, 469
Kzo9I	GATC	4 cut(s)	271, 287, 404, 477
LguI	GCTCTTC	1 cut(s)	92
LpnPI	CCDG	3 cut(s)	45, 165, 360
LweI	GCATC	2 cut(s)	28, 46
MaeIII	GTNAC	2 cut(s)	232, 366
MalI	GATC	4 cut(s)	273, 289, 406, 479
MboI	GATC	4 cut(s)	271, 287, 404, 477
MboII	GAAGA	7 cut(s)	14, 65, 109, 323, 324, 347, 487
MflI	RGATCY	1 cut(s)	404
MluCI	AATT	5 cut(s)	28, 80, 109, 291, 300
MmeI	TCCRAC	2 cut(s)	180, 371
MnlI	CCTC	2 cut(s)	207, 418
MseI	TTAA	2 cut(s)	225, 255
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	4 cut(s)	271, 287, 404, 477
NlaIII	CATG	7 cut(s)	89, 217, 362, 367, 440, 448, 469
NmuCI	GTSAC	1 cut(s)	366
NspI	RCATGY	1 cut(s)	440
NspV	TTCGAA	1 cut(s)	25
PaeR7I	CTCGAG	2 cut(s)	395, 494
PagI	TCATGA	2 cut(s)	213, 444
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	91, 379
PflMI	CCANNNNNTGG	2 cut(s)	179, 466
PspXI	VCTCGAGB	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	404
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	225, 255
Sau3AI	GATC	4 cut(s)	271, 287, 404, 477
SetI	ASST	2 cut(s)	104, 501
SfaNI	GCATC	2 cut(s)	28, 46
Sfr274I	CTCGAG	2 cut(s)	395, 494
SfuI	TTCGAA	1 cut(s)	25
SlaI	CTCGAG	2 cut(s)	395, 494
SmlI	CTYRAG	3 cut(s)	266, 395, 494
SmoI	CTYRAG	3 cut(s)	266, 395, 494
Sse9I	AATT	5 cut(s)	28, 80, 109, 291, 300
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	4 cut(s)	25, 335, 396, 495
TasI	AATT	5 cut(s)	28, 80, 109, 291, 300
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	91, 379
Tru1I	TTAA	2 cut(s)	225, 255
Tru9I	TTAA	2 cut(s)	225, 255
TseFI	GTSAC	1 cut(s)	366
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	8 cut(s)	37, 182, 230, 318, 347, 433, 464, 528
Van91I	CCANNNNNTGG	2 cut(s)	179, 466
XapI	RAATTY	1 cut(s)	109
XceI	RCATGY	1 cut(s)	440
XhoI	CTCGAG	2 cut(s)	395, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.