Rmu_ssc0000111.1_g000012

exocyst complex component

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000111.1
Physical Location & Seq
Reverse (-)
43633 .. 44109
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000111.1_g000012.1.cds

Sequence Viewer

Length: 477 bp
atgaacaatctcaactacatggtgcagaagataaagaacaccaaactcaagcttcttttaggagatgaatggataagaacacaaaagagtagagtccagcaacatgttaaagattatgtgagagctacttggagttcagacgtttctttgttaagacatgatattcgagtatcacattctctctcaaagagaagttctaaaagtaggtgcaaggcttttactaatgcttttgaggaggtgtacaggacacagacaggatggtacgcaccagatcttgagcttcggcaagacctacaaatttcaacttcacagaatgtaatccctgcatatcgtaattttgtcgagagggtctctgtaaagtttaagatcactgacaagtacatgaagtacactgttgatgatctggagaagcatcttttttatctatttgacgggtcgcggagattattaaacaaatcatttacgtgtaggaagtga

Protein Analysis

158

Amino Acids

18.88

Weight (kDa)

9.93

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61010 AT5G61010
fragaria_vesca FvH4_5g13790
prunus_persica Prupe.5G205500_v2.0.a1
rosa_laevigata RLG00000005074
rosa_multiflora Rmu_ssc0000111.1_g000012
rosa_rugosa Rorug06G0453800
rosa_samantha Rh7BG055900 Rh7BG056000 Rh7DG056200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 439
AciI CCGC 1 cut(s) 439
AcsI RAATTY 1 cut(s) 297
AfaI GTAC 4 cut(s) 242, 263, 380, 389
AflIII ACRYGT 2 cut(s) 103, 464
AgsI TTSAA 1 cut(s) 303
AluBI AGCT 3 cut(s) 52, 125, 280
AluI AGCT 3 cut(s) 52, 125, 280
Alw26I GTCTC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 297
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
BccI CCATC 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 355
BglII AGATCT 1 cut(s) 271
BmsI GCATC 1 cut(s) 421
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 2 cut(s) 32, 296
BsaAI YACGTR 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 355
BseGI GGATG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 439
BsmAI GTCTC 1 cut(s) 355
Bso31I GGTCTC 1 cut(s) 355
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 3 cut(s) 271, 366, 400
BspACI CCGC 1 cut(s) 439
BspFNI CGCG 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 240
BssMI GATC 3 cut(s) 271, 366, 400
Bst4CI ACNGT 1 cut(s) 394
BstAUI TGTACA 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 465
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 439
BstKTI GATC 3 cut(s) 274, 369, 403
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 3 cut(s) 271, 366, 400
BstNSI RCATGY 1 cut(s) 107
BstUI CGCG 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 369, 390
Csp6I GTAC 4 cut(s) 241, 262, 379, 388
CviAII CATG 4 cut(s) 19, 104, 158, 382
CviJI RGCY 4 cut(s) 52, 125, 215, 280
CviKI_1 RGCY 4 cut(s) 52, 125, 215, 280
CviQI GTAC 4 cut(s) 241, 262, 379, 388
DpnI GATC 3 cut(s) 273, 368, 402
DpnII GATC 3 cut(s) 271, 366, 400
Eco31I GGTCTC 1 cut(s) 355
FaeI CATG 4 cut(s) 22, 107, 161, 385
FaiI YATR 6 cut(s) 20, 105, 117, 159, 328, 383
FatI CATG 4 cut(s) 18, 103, 157, 381
FokI GGATG 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 425
Hin1II CATG 4 cut(s) 22, 107, 161, 385
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 93
Hpy166II GTNNAC 2 cut(s) 241, 390
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 275, 343, 404
Hpy8I GTNNAC 2 cut(s) 241, 390
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 2 cut(s) 141, 464
HpyCH4V TGCA 3 cut(s) 25, 210, 326
HpySE526I ACGT 2 cut(s) 141, 464
Hsp92II CATG 4 cut(s) 22, 107, 161, 385
Kzo9I GATC 3 cut(s) 271, 366, 400
LpnPI CCDG 6 cut(s) 110, 229, 240, 282, 336, 389
LweI GCATC 1 cut(s) 421
MaeII ACGT 2 cut(s) 141, 464
MalI GATC 3 cut(s) 273, 368, 402
MboI GATC 3 cut(s) 271, 366, 400
MboII GAAGA 1 cut(s) 40
MflI RGATCY 1 cut(s) 271
MluCI AATT 2 cut(s) 297, 334
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 3 cut(s) 226, 229, 339
MseI TTAA 4 cut(s) 108, 152, 363, 449
MslI CAYNNNNRTG 1 cut(s) 463
MvnI CGCG 1 cut(s) 439
NdeII GATC 3 cut(s) 271, 366, 400
NlaIII CATG 4 cut(s) 22, 107, 161, 385
NspI RCATGY 1 cut(s) 107
PciI ACATGT 1 cut(s) 103
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 465
PscI ACATGT 1 cut(s) 103
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 4 cut(s) 242, 263, 380, 389
RsaNI GTAC 4 cut(s) 241, 262, 379, 388
RseI CAYNNNNRTG 1 cut(s) 463
SaqAI TTAA 4 cut(s) 108, 152, 363, 449
Sau3AI GATC 3 cut(s) 271, 366, 400
SchI GAGTC 1 cut(s) 102
SetI ASST 8 cut(s) 54, 127, 144, 209, 240, 282, 294, 467
SfaNI GCATC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 463
SmlI CTYRAG 2 cut(s) 47, 275
SmoI CTYRAG 2 cut(s) 47, 275
Sse9I AATT 2 cut(s) 297, 334
SsiI CCGC 1 cut(s) 439
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 2 cut(s) 144, 467
TaqI TCGA 2 cut(s) 166, 342
TasI AATT 2 cut(s) 297, 334
TatI WGTACW 3 cut(s) 240, 378, 387
Tru1I TTAA 4 cut(s) 108, 152, 363, 449
Tru9I TTAA 4 cut(s) 108, 152, 363, 449
TscAI CASTG 2 cut(s) 376, 397
TspDTI ATGAA 3 cut(s) 17, 81, 398
TspRI CASTG 2 cut(s) 376, 397
XapI RAATTY 1 cut(s) 297
XceI RCATGY 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.