Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018286

Physical Location & Seq

Genomic Coordinates Reverse (-)

3745160 .. 3746176

Gene Structure 1017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG056000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCGGATCACAAATCTCTCACTCCAATCATTGAAGAAGATGAAGGGGAAGTAGAAGATCACCATGTTCTTGCACCTAGGCAAATCATAAGGAATTGCCTGATGGATGCTTTGAAGAAAACCCTGGTGGATTTGGAATCTCAATTGTCTGCCATTGTCGCAATCCCTCAAAGCAATGCACAAGTATTGTTCGAGTTTGACAAGCGGCTCAAGAAGGCTGAGGAAAAATTTCACCATTGGGAGTCGAAGGAACTGATGATATGGGATTCCAGTCCGGTAGAAGCTTCCAAGTATCTGAAAGGCATTGAAGAGATACATAGCCTGATTGAAACCATTGGAGGCTTGTCCGCAGATGAGCATGGGAAGCCGAAGAAGGACCTTCTTTACCGGGCAAATAGTGTGTTGCAGTTGGCAATGTCAAGGCTAGAGGAGGAGCTAGTCCGAATTCTCCTTCAGTACAAGCAATTTGTCGATCCAGGTCCCATGTCTTTTCGTTTGTTTGGAGCAGATCAAGTAGTGTATGATGAGTTCTCACTTGCTTCAATTGATGAAGGATCGAGTGAGGTATCGTCGGTGAGAAATAGTAACAGCAATGAATCGGAGGATTATGTGGTGGATTTGGTGCATCCACTTGGAATGCCTCATCTCAAGTCCATTGCAAATGTTATGTTCACTTCGAATTATGGGGATGAATTTTGCCAAGCTTTTATCAACACAAGGAAGGAAGCTTTCAATGAGTATTTGTTGGGTGTTCTTGGTTGGCAGAAATTCAGCATTGAAGATGTGCATAAGATGGAGTGGACAAGCTTGAACTCGGAGATAAAGAAATGGAATTGGTTAATGAAGATCGTCGTGCGGGTCTATCTTGCTAGTGAGAAGCGTCTATGTGAAAAGATTTTGGGGGAGTTTGGATCTTTTAGCTCATTTTGCTTTCTTGAAACAACGATGGATACAATGGGGTGCCTCTTGAATTTGCCTCTTGAATTTTGGTGTAGCCATAGCCATTGGGGCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0010638 GO:0016020 GO:0016192 GO:0031982 GO:0032386 GO:0032879 GO:0032880 GO:0032940 GO:0032991 GO:0033043 GO:0033157 GO:0043226 GO:0043227 GO:0043230 GO:0044087 GO:0044089 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051130 GO:0051179 GO:0051223 GO:0051234 GO:0060341 GO:0065007 GO:0070062 GO:0070201 GO:0071944 GO:0090087 GO:0099023 GO:0099568 GO:1902115 GO:1902117 GO:1903533 GO:1903551 GO:1903553 GO:1903561 GO:1903827

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

338

Amino Acids

38.75

Weight (kDa)

5.07

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_N	PF20669	70 - 151	9.1e-10	Exocyst complex component Exo70 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61010 AT5G61010
fragaria_vesca	FvH4_5g13790
prunus_persica	Prupe.5G205500_v2.0.a1
rosa_laevigata	RLG00000005074
rosa_multiflora	Rmu_ssc0000111.1_g000012
rosa_rugosa	Rorug06G0453800
rosa_samantha	Rh7BG055900 Rh7BG056000 Rh7DG056200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	960
AciI	CCGC	4 cut(s)	5, 205, 348, 856
AclWI	GGATC	4 cut(s)	15, 467, 562, 919
AcsI	RAATTY	6 cut(s)	227, 444, 692, 767, 970, 983
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	123, 475
AluBI	AGCT	6 cut(s)	284, 436, 704, 728, 807, 921
AluI	AGCT	6 cut(s)	284, 436, 704, 728, 807, 921
AlwI	GGATC	4 cut(s)	15, 467, 562, 919
ApoI	RAATTY	6 cut(s)	227, 444, 692, 767, 970, 983
Asp700I	GAANNNNTTC	1 cut(s)	228
AspA2I	CCTAGG	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	376, 479
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	53, 224, 586
AsuII	TTCGAA	1 cut(s)	677
AvaII	GGWCC	2 cut(s)	376, 479
AvrII	CCTAGG	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	960
BanII	GRGCYC	1 cut(s)	1013
BbvCI	CCTCAGC	1 cut(s)	219
BccI	CCATC	3 cut(s)	97, 787, 940
BciT130I	CCWGG	2 cut(s)	125, 477
BciVI	GTATCC	1 cut(s)	943
BcnI	CCSGG	1 cut(s)	389
BfaI	CTAG	4 cut(s)	78, 425, 437, 870
BfuI	GTATCC	1 cut(s)	943
BglI	GCCNNNNNGGC	1 cut(s)	1008
BisI	GCNGC	1 cut(s)	206
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	3 cut(s)	125, 389, 477
Bme18I	GGWCC	2 cut(s)	376, 479
BmgT120I	GGNCC	2 cut(s)	376, 479
BmiI	GGNNCC	2 cut(s)	481, 962
BmrFI	CCNGG	3 cut(s)	125, 389, 477
BmsI	GCATC	2 cut(s)	97, 634
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	677
BpuEI	CTTGAG	2 cut(s)	194, 632
BpuMI	CCSGG	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	77, 123
BsaWI	WCCGGW	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	4 cut(s)	181, 420, 598, 654
BseBI	CCWGG	2 cut(s)	125, 477
BseDI	CCNNGG	2 cut(s)	77, 123
BseGI	GGATG	3 cut(s)	112, 625, 694
BseMI	GCAATG	4 cut(s)	181, 420, 598, 654
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	443, 446
BshNI	GGYRCC	1 cut(s)	960
BsiSI	CCGG	2 cut(s)	275, 388
BslFI	GGGAC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	642
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	1 cut(s)	1013
Bsp143I	GATC	7 cut(s)	7, 58, 472, 508, 554, 846, 911
BspACI	CCGC	4 cut(s)	5, 205, 348, 856
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	481, 962
BspPI	GGATC	4 cut(s)	15, 467, 562, 919
BspT104I	TTCGAA	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	960
BsrDI	GCAATG	4 cut(s)	181, 420, 598, 654
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	2 cut(s)	77, 123
BssMI	GATC	7 cut(s)	7, 58, 472, 508, 554, 846, 911
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	125, 477
Bst6I	CTCTTC	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	677
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	112, 625, 694
BstKTI	GATC	7 cut(s)	10, 61, 475, 511, 557, 849, 914
BstMBI	GATC	7 cut(s)	7, 58, 472, 508, 554, 846, 911
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 364, 927, 1008
BstNI	CCWGG	2 cut(s)	125, 477
BstSCI	CCNGG	3 cut(s)	123, 387, 475
BstX2I	RGATCY	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	911
BsuI	GTATCC	1 cut(s)	943
BtsCI	GGATG	3 cut(s)	112, 625, 694
Cfr13I	GGNCC	2 cut(s)	376, 479
CseI	GACGC	1 cut(s)	869
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	3 cut(s)	65, 359, 484
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	7 cut(s)	9, 60, 474, 510, 556, 848, 913
DpnII	GATC	7 cut(s)	7, 58, 472, 508, 554, 846, 911
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	1013
Eco47I	GGWCC	2 cut(s)	376, 479
Eco57I	CTGAAG	1 cut(s)	437
EcoO109I	RGGNCCY	2 cut(s)	376, 479
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	123, 475
EcoT14I	CCWWGG	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	1013
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	3 cut(s)	68, 362, 487
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	3 cut(s)	64, 358, 483
FauI	CCCGC	1 cut(s)	849
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	3 cut(s)	119, 612, 701
FriOI	GRGCYC	1 cut(s)	1013
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	4 cut(s)	78, 425, 437, 870
GluI	GCNGC	1 cut(s)	206
HapII	CCGG	2 cut(s)	275, 388
HgaI	GACGC	1 cut(s)	869
Hin1II	CATG	3 cut(s)	68, 362, 487
HindIII	AAGCTT	4 cut(s)	282, 702, 726, 805
HinfI	GANTC	4 cut(s)	137, 242, 266, 596
HpaII	CCGG	2 cut(s)	275, 388
HphI	GGTGA	3 cut(s)	53, 224, 586
Hpy166II	GTNNAC	2 cut(s)	672, 801
Hpy188I	TCNGA	4 cut(s)	297, 443, 601, 817
Hpy188III	TCNNGA	4 cut(s)	211, 935, 967, 980
Hpy8I	GTNNAC	2 cut(s)	672, 801
Hpy99I	CGWCG	2 cut(s)	574, 854
HpyAV	CCTTC	8 cut(s)	38, 208, 241, 367, 389, 461, 545, 715
HpyCH4V	TGCA	6 cut(s)	74, 179, 406, 625, 659, 787
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 364, 927, 1008
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	68, 362, 487
Kzo9I	GATC	7 cut(s)	7, 58, 472, 508, 554, 846, 911
LmnI	GCTCC	2 cut(s)	433, 503
LpnPI	CCDG	9 cut(s)	110, 113, 137, 283, 288, 335, 401, 462, 489
LweI	GCATC	2 cut(s)	97, 634
MaeI	CTAG	4 cut(s)	78, 425, 437, 870
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	7 cut(s)	9, 60, 474, 510, 556, 848, 913
MboI	GATC	7 cut(s)	7, 58, 472, 508, 554, 846, 911
MboII	GAAGA	8 cut(s)	47, 50, 68, 127, 320, 382, 791, 856
MfeI	CAATTG	2 cut(s)	143, 543
MflI	RGATCY	1 cut(s)	911
MhlI	GDGCHC	1 cut(s)	1013
MlyI	GAGTC	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	1 cut(s)	839
MspI	CCGG	2 cut(s)	275, 388
MspR9I	CCNGG	3 cut(s)	125, 389, 477
MunI	CAATTG	2 cut(s)	143, 543
Mva1269I	GAATGC	1 cut(s)	642
MvaI	CCWGG	2 cut(s)	125, 477
MwoI	GCNNNNNNNGC	4 cut(s)	158, 364, 927, 1008
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	7 cut(s)	7, 58, 472, 508, 554, 846, 911
NlaIII	CATG	3 cut(s)	68, 362, 487
NlaIV	GGNNCC	2 cut(s)	481, 962
NspV	TTCGAA	1 cut(s)	677
PctI	GAATGC	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	137, 266, 596
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PpuMI	RGGWCCY	2 cut(s)	376, 479
Psp5II	RGGWCCY	2 cut(s)	376, 479
Psp6I	CCWGG	2 cut(s)	123, 475
PspGI	CCWGG	2 cut(s)	123, 475
PspN4I	GGNNCC	2 cut(s)	481, 962
PspPI	GGNCC	2 cut(s)	376, 479
PspPPI	RGGWCCY	2 cut(s)	376, 479
PsrI	GAACNNNNNNTAC	2 cut(s)	512, 544
PsuI	RGATCY	1 cut(s)	911
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	839
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	7 cut(s)	7, 58, 472, 508, 554, 846, 911
Sau96I	GGNCC	2 cut(s)	376, 479
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	125, 389, 477
SduI	GDGCHC	1 cut(s)	1013
SfaNI	GCATC	2 cut(s)	97, 634
SfuI	TTCGAA	1 cut(s)	677
SinI	GGWCC	2 cut(s)	376, 479
SmlI	CTYRAG	2 cut(s)	209, 647
SmoI	CTYRAG	2 cut(s)	209, 647
SsiI	CCGC	4 cut(s)	5, 205, 348, 856
SspMI	CTAG	4 cut(s)	78, 425, 437, 870
StyD4I	CCNGG	3 cut(s)	123, 387, 475
StyI	CCWWGG	1 cut(s)	77
TaqI	TCGA	5 cut(s)	192, 245, 471, 557, 677
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	3 cut(s)	137, 266, 596
Tru1I	TTAA	1 cut(s)	839
Tru9I	TTAA	1 cut(s)	839
TspDTI	ATGAA	5 cut(s)	57, 564, 609, 705, 857
VpaK11BI	GGWCC	2 cut(s)	376, 479
XapI	RAATTY	6 cut(s)	227, 444, 692, 767, 970, 983
XmaJI	CCTAGG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	4 cut(s)	78, 425, 437, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.