Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0018286

Physical Location & Seq

Genomic Coordinates Reverse (-)

4324338 .. 4325346

Gene Structure 1009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG056200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCCGGCTTTTTTGCACAGGTTACAGTGCACCGGACTCCCTTTCAAAGACTTCTTCCTACAATGATCAAGTTTATTAAGACTGTTACTGACTATGGTGATACACTTAACTTGCTTCTCAAGGATCAACACATAGAAGGATCAATTACAGAAATTGAGTTTGAAGATAAGAAAGGCAGTTCATCTTCGACGCTCACTCCAACATCTCTTCATGTTATGTCAATTACTGGGATTCTAAAATCAAATCTCGAGAACAGATCCAAATTGTACGAAGATTTACAGCATGTTTTCATGATGAACAATCTCAACTACATGGTGCAGAAGATAAAGAACACCAAACTCAAGCTTCTTTTAGGAGATGAAAGGATAAGAACACAAAAGAGTAAAGTCCAGCAACATGTTAAAGATTATGTGAGAGCTGCTTGGAGTTCAGACGTTTCTTTGTTAAGACATGATATTCGAGTGTCACATTCTCTCTCAAAGAGAAGTTCTAAAAGTAGGTGCAAGGCTTTTACTAATGCTTTTGAGGAGGTGTACAGGACACAGACAGGATGGTACGTACCAGATCTTGAGCTTCGGGAAGACCTACAAATTTCAACTTCACAGAATGTAATCCCTGCATATCGTAATTTTGTCGAGAGGGTCTCTGTAAAGTTTAAGATCACTAACAAGTACATGAAGTACACTGTTGATGATCTGGAGAAGCATCTTTTTGATCTATTTGAAGGGTCGCGGAGATTATTAAACAAATCATTTACGTGTAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0010638 GO:0016020 GO:0016192 GO:0031982 GO:0032386 GO:0032879 GO:0032880 GO:0032940 GO:0032991 GO:0033043 GO:0033157 GO:0043226 GO:0043227 GO:0043230 GO:0044087 GO:0044089 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051130 GO:0051179 GO:0051223 GO:0051234 GO:0060341 GO:0065007 GO:0070062 GO:0070201 GO:0071944 GO:0090087 GO:0099023 GO:0099568 GO:1902115 GO:1902117 GO:1903533 GO:1903551 GO:1903553 GO:1903561 GO:1903827

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

256

Amino Acids

29.91

Weight (kDa)

9.66

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	21 - 237	2.5e-61	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61010 AT5G61010
fragaria_vesca	FvH4_5g13790
prunus_persica	Prupe.5G205500_v2.0.a1
rosa_laevigata	RLG00000005074
rosa_multiflora	Rmu_ssc0000111.1_g000012
rosa_rugosa	Rorug06G0453800
rosa_samantha	Rh7BG055900 Rh7BG056000 Rh7DG056200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	733
AciI	CCGC	1 cut(s)	733
AclWI	GGATC	3 cut(s)	132, 148, 252
AcsI	RAATTY	1 cut(s)	591
AfaI	GTAC	6 cut(s)	269, 536, 557, 561, 674, 683
AflIII	ACRYGT	2 cut(s)	397, 758
AgsI	TTSAA	4 cut(s)	47, 164, 597, 725
AluBI	AGCT	3 cut(s)	346, 419, 574
AluI	AGCT	3 cut(s)	346, 419, 574
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	649
Alw44I	GTGCAC	1 cut(s)	29
AlwI	GGATC	3 cut(s)	132, 148, 252
Ama87I	CYCGRG	1 cut(s)	248
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	591
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	1 cut(s)	546
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	248
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	715
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	588
BplI	GAGNNNNNCTC	2 cut(s)	629, 661
BpmI	CTGGAG	1 cut(s)	719
BpuEI	CTTGAG	3 cut(s)	104, 326, 590
BsaAI	YACGTR	2 cut(s)	559, 759
BsaI	GGTCTC	1 cut(s)	649
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bse1I	ACTGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	733
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	6, 34
BsmAI	GTCTC	1 cut(s)	649
Bso31I	GGTCTC	1 cut(s)	649
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	8 cut(s)	66, 124, 140, 257, 565, 660, 694, 715
BspACI	CCGC	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	733
BspHI	TCATGA	1 cut(s)	291
BspPI	GGATC	3 cut(s)	132, 148, 252
BspTNI	GGTCTC	1 cut(s)	649
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	232
BssMI	GATC	8 cut(s)	66, 124, 140, 257, 565, 660, 694, 715
Bst4CI	ACNGT	3 cut(s)	28, 85, 688
Bst6I	CTCTTC	1 cut(s)	213
BstAUI	TGTACA	1 cut(s)	534
BstBAI	YACGTR	2 cut(s)	559, 759
BstF5I	GGATG	1 cut(s)	557
BstFNI	CGCG	1 cut(s)	733
BstKTI	GATC	8 cut(s)	69, 127, 143, 260, 568, 663, 697, 718
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	8 cut(s)	66, 124, 140, 257, 565, 660, 694, 715
BstNSI	RCATGY	2 cut(s)	287, 401
BstSLI	GKGCMC	1 cut(s)	33
BstSNI	TACGTA	1 cut(s)	559
BstUI	CGCG	1 cut(s)	733
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	2 cut(s)	257, 565
BstYI	RGATCY	2 cut(s)	257, 565
BtsCI	GGATG	1 cut(s)	557
BtsIMutI	CAGTG	2 cut(s)	33, 684
CciI	TCATGA	1 cut(s)	291
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	6 cut(s)	268, 535, 556, 560, 673, 682
CviAII	CATG	7 cut(s)	212, 284, 292, 313, 398, 452, 676
CviJI	RGCY	5 cut(s)	9, 346, 419, 509, 574
CviKI_1	RGCY	5 cut(s)	9, 346, 419, 509, 574
CviQI	GTAC	6 cut(s)	268, 535, 556, 560, 673, 682
DpnI	GATC	8 cut(s)	68, 126, 142, 259, 567, 662, 696, 717
DpnII	GATC	8 cut(s)	66, 124, 140, 257, 565, 660, 694, 715
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco105I	TACGTA	1 cut(s)	559
Eco31I	GGTCTC	1 cut(s)	649
Eco88I	CYCGRG	1 cut(s)	248
FaeI	CATG	7 cut(s)	215, 287, 295, 316, 401, 455, 679
FatI	CATG	7 cut(s)	211, 283, 291, 312, 397, 451, 675
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	420
GluI	GCNGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	719
HapII	CCGG	2 cut(s)	6, 34
HgaI	GACGC	1 cut(s)	199
Hin1II	CATG	7 cut(s)	215, 287, 295, 316, 401, 455, 679
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	2 cut(s)	37, 232
HpaII	CCGG	2 cut(s)	6, 34
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	31, 535, 684
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	7 cut(s)	248, 250, 292, 569, 578, 637, 698
Hpy8I	GTNNAC	3 cut(s)	31, 535, 684
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	131, 719
HpyCH4III	ACNGT	3 cut(s)	28, 85, 688
HpyCH4IV	ACGT	3 cut(s)	435, 558, 758
HpyCH4V	TGCA	5 cut(s)	17, 31, 319, 504, 620
HpySE526I	ACGT	3 cut(s)	435, 558, 758
Hsp92II	CATG	7 cut(s)	215, 287, 295, 316, 401, 455, 679
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	8 cut(s)	66, 124, 140, 257, 565, 660, 694, 715
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	715
MaeII	ACGT	3 cut(s)	435, 558, 758
MaeIII	GTNAC	3 cut(s)	22, 85, 465
MalI	GATC	8 cut(s)	68, 126, 142, 259, 567, 662, 696, 717
MboI	GATC	8 cut(s)	66, 124, 140, 257, 565, 660, 694, 715
MboII	GAAGA	7 cut(s)	47, 176, 177, 200, 284, 334, 593
MflI	RGATCY	2 cut(s)	257, 565
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	6 cut(s)	144, 153, 222, 263, 591, 628
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	3 cut(s)	520, 523, 633
MseI	TTAA	6 cut(s)	78, 108, 402, 446, 657, 743
MslI	CAYNNNNRTG	1 cut(s)	757
MspI	CCGG	2 cut(s)	6, 34
MvnI	CGCG	1 cut(s)	733
NdeII	GATC	8 cut(s)	66, 124, 140, 257, 565, 660, 694, 715
NlaIII	CATG	7 cut(s)	215, 287, 295, 316, 401, 455, 679
NmuCI	GTSAC	1 cut(s)	465
NspI	RCATGY	2 cut(s)	287, 401
PaeR7I	CTCGAG	1 cut(s)	248
PagI	TCATGA	1 cut(s)	291
PciI	ACATGT	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Ppu21I	YACGTR	2 cut(s)	559, 759
PscI	ACATGT	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	257, 565
RsaI	GTAC	6 cut(s)	269, 536, 557, 561, 674, 683
RsaNI	GTAC	6 cut(s)	268, 535, 556, 560, 673, 682
RseI	CAYNNNNRTG	1 cut(s)	757
SaqAI	TTAA	6 cut(s)	78, 108, 402, 446, 657, 743
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	8 cut(s)	66, 124, 140, 257, 565, 660, 694, 715
SchI	GAGTC	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	715
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	757
SmlI	CTYRAG	4 cut(s)	119, 248, 341, 569
SmoI	CTYRAG	4 cut(s)	119, 248, 341, 569
SnaBI	TACGTA	1 cut(s)	559
Sse9I	AATT	6 cut(s)	144, 153, 222, 263, 591, 628
SsiI	CCGC	1 cut(s)	733
TaaI	ACNGT	3 cut(s)	28, 85, 688
TaiI	ACGT	3 cut(s)	438, 561, 761
TaqI	TCGA	4 cut(s)	188, 249, 460, 636
TasI	AATT	6 cut(s)	144, 153, 222, 263, 591, 628
TatI	WGTACW	3 cut(s)	534, 672, 681
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	6 cut(s)	78, 108, 402, 446, 657, 743
Tru9I	TTAA	6 cut(s)	78, 108, 402, 446, 657, 743
TscAI	CASTG	2 cut(s)	33, 691
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	6 cut(s)	171, 200, 280, 311, 375, 692
TspRI	CASTG	2 cut(s)	33, 691
VneI	GTGCAC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	591
XceI	RCATGY	2 cut(s)	287, 401
XhoI	CTCGAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.