FvH4_5g14274

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013676
Physical Location & Seq
Forward (+)
8071835 .. 8072817
983 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14274.t1

Sequence Viewer

Length: 588 bp
ATGGGCAATACCACTACAACCTCTTCTTCTAATTTCTCTGTTGTACACAATAATGCTTCTTCATCTCTTACTGAGATTGAGCAAGAGCGGCTTGGTGATGATGCTCTCAAGGGATGTGGAGCTAGTCACAAGAAGATCAAAAGATGCTTTGCTTCTAAGATTGAGAGCAGTGAAAACACAACCGAGTTTGACACAGACCTCTCCACTGATCATCATCCAGTTGCATCAGATCACAGTAAGCTCAGTAATCTCATTCATCAGCAAGATGTTGTTATAAAAGCTGAGAGAAACAGTACAAAGAGTAAGGGGCATTCTTGTCCAATTTGCCTAAAGGTTTTCCCCACTGGTCAAGCATTGGGCGGTCACAAGAGATCACACTTGATTGTTGGTCCAACTGAGAGTAAGAACAACCAAAGTACCATAGACATTCCCAAGCCAGCAACTCCTGAAGTTAGAGACTTTCTTGATCTCAACCTTCCTGCTCCTGTTGAAGAAGAGAGCAGTACCAACCATGCTGCTGCTGCGCAAGCCTTAAAGCCATGGTGGGCAGGAAGCAACCATAAGCCTTATGAGGCTCTTGTTTCATAG

Protein Analysis

196

Amino Acids

21.08

Weight (kDa)

6.4

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 104 - 127 5.2e-11 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14270 FvH4_5g14274
malus_domestica MD06G1199800.v1.1 MD14G1209000.v1.1
prunus_persica Prupe.5G201400_v2.0.a1
pyrus_communis pycom06g17660 pycom14g17280
rosa_chinensis RchiOBHm_Chr7g0182641
rosa_laevigata RLG00000005112
rosa_multiflora Rmu_sc0005811.1_g000012 Rmu_sc0027411.1_g000002
rosa_roxburghii Rroxscaffold_3G00271100
rosa_rugosa Rorug06G0448700
rosa_samantha Rh7AG052600 Rh7BG052200 Rh7CG053700 Rh7DG051900
rosa_wichuraiana Rw7G004280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
Acc16I TGCGCA 1 cut(s) 525
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 2 cut(s) 88, 360
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 4 cut(s) 45, 295, 418, 505
AgsI TTSAA 1 cut(s) 491
AluBI AGCT 3 cut(s) 122, 241, 281
AluI AGCT 3 cut(s) 122, 241, 281
Alw26I GTCTC 1 cut(s) 450
ApeKI GCWGC 3 cut(s) 515, 518, 521
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 389
BaeI ACNNNNGTAYC 2 cut(s) 400, 433
BbvI GCAGC 3 cut(s) 502, 505, 508
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 1 cut(s) 123
BisI GCNGC 4 cut(s) 89, 516, 519, 522
BlsI GCNGC 4 cut(s) 90, 517, 520, 523
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 389
BmsI GCATC 3 cut(s) 91, 134, 233
BpuEI CTTGAG 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 539
Bse1I ACTGG 2 cut(s) 218, 349
Bse8I GATNNNNATC 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 539
BseGI GGATG 2 cut(s) 119, 214
BseJI GATNNNNATC 1 cut(s) 213
BseMII CTCAG 4 cut(s) 63, 256, 273, 387
BseNI ACTGG 2 cut(s) 218, 349
BseXI GCAGC 3 cut(s) 502, 505, 508
BsmAI GTCTC 1 cut(s) 450
BsmI GAATGC 1 cut(s) 310
Bsp1407I TGTACA 1 cut(s) 43
Bsp143I GATC 5 cut(s) 135, 208, 229, 371, 466
Bsp19I CCATGG 1 cut(s) 539
BspACI CCGC 2 cut(s) 88, 360
BspCNI CTCAG 4 cut(s) 64, 255, 274, 388
BsrBI CCGCTC 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 43
BsrI ACTGG 2 cut(s) 218, 349
BssECI CCNNGG 1 cut(s) 539
BssMI GATC 5 cut(s) 135, 208, 229, 371, 466
BssT1I CCWWGG 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 236, 293
Bst6I CTCTTC 2 cut(s) 28, 489
BstAUI TGTACA 1 cut(s) 43
BstC8I GCNNGC 2 cut(s) 438, 528
BstDEI CTNAG 5 cut(s) 72, 156, 242, 282, 396
BstDSI CCRYGG 1 cut(s) 539
BstF5I GGATG 2 cut(s) 119, 214
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 5 cut(s) 138, 211, 232, 374, 469
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 5 cut(s) 135, 208, 229, 371, 466
BstMWI GCNNNNNNNGC 3 cut(s) 88, 521, 527
BstV1I GCAGC 3 cut(s) 502, 505, 508
BtgI CCRYGG 1 cut(s) 539
BtsCI GGATG 2 cut(s) 119, 214
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 3 cut(s) 175, 204, 342
Cac8I GCNNGC 2 cut(s) 438, 528
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 389
Csp6I GTAC 4 cut(s) 44, 294, 417, 504
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 2 cut(s) 512, 540
CviJI RGCY 9 cut(s) 91, 122, 241, 281, 436, 530, 538, 565, 575
CviKI_1 RGCY 9 cut(s) 91, 122, 241, 281, 436, 530, 538, 565, 575
CviQI GTAC 4 cut(s) 44, 294, 417, 504
DdeI CTNAG 5 cut(s) 72, 156, 242, 282, 396
DpnI GATC 5 cut(s) 137, 210, 231, 373, 468
DpnII GATC 5 cut(s) 135, 208, 229, 371, 466
Eam1104I CTCTTC 2 cut(s) 28, 489
EarI CTCTTC 2 cut(s) 28, 489
Eco130I CCWWGG 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 539
ErhI CCWWGG 1 cut(s) 539
FaeI CATG 2 cut(s) 515, 543
FaiI YATR 7 cut(s) 275, 422, 513, 541, 561, 570, 586
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 2 cut(s) 511, 539
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 4 cut(s) 89, 516, 519, 522
FokI GGATG 2 cut(s) 126, 201
Fsp4HI GCNGC 4 cut(s) 89, 516, 519, 522
FspBI CTAG 1 cut(s) 123
FspI TGCGCA 1 cut(s) 525
GlaI GCGC 1 cut(s) 525
GluI GCNGC 4 cut(s) 89, 516, 519, 522
HhaI GCGC 1 cut(s) 526
Hin1II CATG 2 cut(s) 515, 543
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 446, 464
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 2 cut(s) 236, 293
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 521, 527
HpyF3I CTNAG 5 cut(s) 72, 156, 242, 282, 396
Hsp92II CATG 2 cut(s) 515, 543
HspAI GCGC 1 cut(s) 524
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 5 cut(s) 135, 208, 229, 371, 466
LmnI GCTCC 2 cut(s) 119, 487
LpnPI CCDG 7 cut(s) 231, 330, 450, 459, 492, 498, 534
Lsp1109I GCAGC 3 cut(s) 502, 505, 508
LweI GCATC 3 cut(s) 91, 134, 233
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 125, 362
MalI GATC 5 cut(s) 137, 210, 231, 373, 468
MbiI CCGCTC 1 cut(s) 88
MboI GATC 5 cut(s) 135, 208, 229, 371, 466
MboII GAAGA 6 cut(s) 15, 18, 51, 145, 503, 506
MluCI AATT 2 cut(s) 31, 321
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 3 cut(s) 31, 209, 565
MseI TTAA 1 cut(s) 533
MslI CAYNNNNRTG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 310
MwoI GCNNNNNNNGC 3 cut(s) 88, 521, 527
NcoI CCATGG 1 cut(s) 539
NdeII GATC 5 cut(s) 135, 208, 229, 371, 466
NlaIII CATG 2 cut(s) 515, 543
NmuCI GTSAC 2 cut(s) 125, 362
NsbI TGCGCA 1 cut(s) 525
PctI GAATGC 1 cut(s) 310
PkrI GCNGC 4 cut(s) 90, 517, 520, 523
PsiI TTATAA 1 cut(s) 275
PspPI GGNCC 1 cut(s) 389
RsaI GTAC 4 cut(s) 45, 295, 418, 505
RsaNI GTAC 4 cut(s) 44, 294, 417, 504
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 4 cut(s) 89, 516, 519, 522
Sau3AI GATC 5 cut(s) 135, 208, 229, 371, 466
Sau96I GGNCC 1 cut(s) 389
SetI ASST 7 cut(s) 23, 124, 201, 243, 283, 336, 477
SfaNI GCATC 3 cut(s) 91, 134, 233
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 31, 321
SsiI CCGC 2 cut(s) 88, 360
SspMI CTAG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 2 cut(s) 236, 293
TasI AATT 2 cut(s) 31, 321
TatI WGTACW 2 cut(s) 43, 293
TauI GCSGC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 3 cut(s) 175, 211, 349
TseFI GTSAC 2 cut(s) 125, 362
TseI GCWGC 3 cut(s) 515, 518, 521
Tsp45I GTSAC 2 cut(s) 125, 362
TspDTI ATGAA 3 cut(s) 51, 245, 573
TspRI CASTG 3 cut(s) 175, 211, 349
VpaK11BI GGWCC 1 cut(s) 389
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.