Rorug06G0448700

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013676
Physical Location & Seq
Forward (+)
57879298 .. 57881609
2312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0448700.1

Sequence Viewer

Length: 1470 bp
ATGGCATTACCACCATTAGAGCCTCATGTCGTAATCTTTCCTTTCATGGCTCATGGCCACACTCTTCCATTACTAGACCTCTCCAAAGCTCTCTCCCACCGGAGAATCAAAGTGACCATCATCACAACTCCTTCAAATGTCAAATCCATTTCCGAAAACTTAGCGTATCACCCAAACATAATCATCCTCCCAATCCCTTTCCCCACGGATATCGATGCCCTCGGCCTACCTCGAGGAATTGAAAATACCTCCCAACTCCCATCTATGGATTTCTGGTTCCCTTTCGTCCTCGCCACCAAGCAACTCCAAAAGCCCTTCGAACAAGTCCTACAATCCATGCGCGATTCCAAATCCCTTCCCATGTGCGTGATCTCAGATTTCTTCTTGGGCTGGACACTCAAATCCTGCCAGGATTTCGGAGTTCCGAGGCTGGTGTTTCATGGCATGGGGGTCTTGTCAATGGCCATATGCAAAAGTGTGCTCGTGCATAGGCCACACTTGAAAGCAAAGTCGGTTTCAGAGCCATTAGACTTTCCCGGCCTTAAGCTTCCCTTTGTTTTGGATACTTCAGAATTACCAGAGATGATTGTTCAAGTAGGTGATGCAAATGACCCATTTTCTCAGTATATGTTTGAGGTGAGCGAAGCTGACATTAATAGCTGGGGGGTCATTGTTAATAGCTTCGAGGAGCTAGAGACTGGTACTGTTTCATCATTTGAATCATTCTATGAGAAAGGAGCTAAAGCTTGGTGTTTAGGACCTCTTAATTTTTATGAAAAGGTGGAAGGTGGTGTTGCTAACAATTATATTAGCGAAGTACCCATCAACCAGAAAAAACAAGGCCTTGTGTTAACAGAGTGGCTTAATGAGCAAGTGACTCTGGGCTCTGTGATTTATGTCTCATTTGGAACACAGGCTGATTTGTCAGGGGCTCAACTTGATGAAGTGGTTTTTGGCTTAGAGGAGGCTGGCGTTCCATTTGTCTTGGTGGTGCGATCGACCACATGGTCTCCACCAAACGGACTTGAAGAGAGATTAAAAGGTAAGGGCTTGATCACGAGGGAGTGGGTGGATCAACGCCAAATTCTATCACACCGAGCAGTAGGAGGTTTCCTGAGCCACTGTGGTTGGAACTCGGTGATCGAAAGCATCTCTGCTGGGGTGCCTATTTTGGCCTGGCCTATGATAGCAGAGCAGAGTCTGAATGCCAAGCTTGTTGCTGAAGGACTCGGAGCAGGACTTGGAATCAAAAAAGTGAAAGATCACTCGGGGTCGGGATTTGAAGTCTCAAGGCAAGCAATCTGCGAAGGCGTGAGAGAGCTGATATTGGGAGGAGAGAAAGGAAGGAGTGCAAAGGAGAGAGCACAAGCCCTGGGAAGAGTAGCTTGGCGTGCGGTTCAAAAAGGTGGTTCCTCCTATCAAGCCCTAGGCAAGCTTATAGACCAACTAAGGGCATCTTCTGCCCAATAA

Protein Analysis

489

Amino Acids

53.58

Weight (kDa)

6.04

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 10 - 256 3.3e-06 Glycosyltransferase, N-terminal domain
UDPGT PF00201 296 - 409 3.7e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14270 FvH4_5g14274
malus_domestica MD06G1199800.v1.1 MD14G1209000.v1.1
prunus_persica Prupe.5G201400_v2.0.a1
pyrus_communis pycom06g17660 pycom14g17280
rosa_chinensis RchiOBHm_Chr7g0182641
rosa_laevigata RLG00000005112
rosa_multiflora Rmu_sc0005811.1_g000012 Rmu_sc0027411.1_g000002
rosa_roxburghii Rroxscaffold_3G00271100
rosa_rugosa Rorug06G0448700
rosa_samantha Rh7AG052600 Rh7BG052200 Rh7CG053700 Rh7DG051900
rosa_wichuraiana Rw7G004280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1006
AbsI CCTCGAGG 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 1162
AccII CGCG 1 cut(s) 342
AciI CCGC 1 cut(s) 1394
AclWI GGATC 1 cut(s) 1080
AcoI YGGCCR 2 cut(s) 55, 462
AcsI RAATTY 1 cut(s) 1083
AcuI CTGAAG 2 cut(s) 552, 1242
AfaI GTAC 2 cut(s) 703, 819
AfiI CCNNNNNNNGG 3 cut(s) 265, 1019, 1450
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 8 cut(s) 135, 242, 502, 593, 719, 1028, 1283, 1400
AjnI CCWGG 3 cut(s) 408, 1175, 1371
AjuI GAANNNNNNNTTGG 4 cut(s) 936, 968, 1369, 1401
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
Alw21I GWGCWC 2 cut(s) 483, 1366
Alw26I GTCTC 4 cut(s) 689, 904, 1014, 1291
AlwI GGATC 1 cut(s) 1080
AlwNI CAGNNNCTG 1 cut(s) 1201
Ama87I CYCGRG 2 cut(s) 231, 1267
AoxI GGCC 8 cut(s) 55, 223, 462, 491, 538, 841, 1173, 1178
ApoI RAATTY 1 cut(s) 1083
AseI ATTAAT 1 cut(s) 654
AspA2I CCTAGG 1 cut(s) 1426
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 758
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 4 cut(s) 161, 611, 649, 1150
AsuII TTCGAA 1 cut(s) 318
AvaI CYCGRG 2 cut(s) 231, 1267
AvaII GGWCC 1 cut(s) 758
AvrII CCTAGG 1 cut(s) 1426
BalI TGGCCA 2 cut(s) 57, 464
BanI GGYRCC 1 cut(s) 1162
BanII GRGCYC 2 cut(s) 887, 934
BauI CACGAG 2 cut(s) 482, 1057
Bbv12I GWGCWC 2 cut(s) 483, 1366
BccI CCATC 3 cut(s) 125, 268, 830
BciT130I CCWGG 3 cut(s) 410, 1177, 1373
BciVI GTATCC 1 cut(s) 556
BclI TGATCA 1 cut(s) 1053
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 4 cut(s) 689, 904, 1014, 1291
BfaI CTAG 3 cut(s) 74, 692, 1427
BfrI CTTAAG 1 cut(s) 542
BfuI GTATCC 1 cut(s) 556
BlnI CCTAGG 1 cut(s) 1426
Bme1390I CCNGG 4 cut(s) 410, 537, 1177, 1373
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 2 cut(s) 231, 1267
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 3 cut(s) 278, 1164, 1411
BmrFI CCNGG 4 cut(s) 410, 537, 1177, 1373
BmsI GCATC 4 cut(s) 205, 592, 1158, 1463
Bpu10I CCTNAGC 1 cut(s) 1115
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 1273
BpuMI CCSGG 1 cut(s) 537
Bsa29I ATCGAT 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 1014
BsaJI CCNNGG 6 cut(s) 204, 220, 425, 1371, 1372, 1426
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 994, 1024
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 1019, 1450
Bse1I ACTGG 1 cut(s) 703
BseBI CCWGG 3 cut(s) 410, 1177, 1373
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 6 cut(s) 204, 220, 425, 1371, 1372, 1426
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 3 cut(s) 265, 1019, 1450
BseMII CTCAG 3 cut(s) 387, 635, 1106
BseNI ACTGG 1 cut(s) 703
BseRI GAGGAG 3 cut(s) 701, 977, 1347
BseYI CCCAGC 2 cut(s) 660, 1157
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 998
BshFI GGCC 8 cut(s) 57, 225, 464, 493, 540, 843, 1175, 1180
BshNI GGYRCC 1 cut(s) 1162
BshVI ATCGAT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 998
BsiHKAI GWGCWC 2 cut(s) 483, 1366
BsiHKCI CYCGRG 2 cut(s) 231, 1267
BsiSI CCGG 2 cut(s) 100, 537
BslI CCNNNNNNNGG 3 cut(s) 265, 1019, 1450
BsmAI GTCTC 4 cut(s) 689, 904, 1014, 1291
BsmI GAATGC 1 cut(s) 1210
BsnI GGCC 8 cut(s) 57, 225, 464, 493, 540, 843, 1175, 1180
Bso31I GGTCTC 1 cut(s) 1014
BsoBI CYCGRG 2 cut(s) 231, 1267
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 4 cut(s) 483, 887, 934, 1366
Bsp143I GATC 6 cut(s) 369, 995, 1053, 1072, 1140, 1261
BspACI CCGC 1 cut(s) 1394
BspANI GGCC 8 cut(s) 57, 225, 464, 493, 540, 843, 1175, 1180
BspCNI CTCAG 3 cut(s) 386, 634, 1107
BspDI ATCGAT 1 cut(s) 213
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 278, 1164, 1411
BspPI GGATC 1 cut(s) 1080
BspT104I TTCGAA 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 1162
BspTI CTTAAG 1 cut(s) 542
BspTNI GGTCTC 1 cut(s) 1014
BsrI ACTGG 1 cut(s) 703
BssECI CCNNGG 6 cut(s) 204, 220, 425, 1371, 1372, 1426
BssMI GATC 6 cut(s) 369, 995, 1053, 1072, 1140, 1261
BssSI CACGAG 2 cut(s) 482, 1057
BssT1I CCWWGG 1 cut(s) 1426
Bst2BI CACGAG 2 cut(s) 482, 1057
Bst2UI CCWGG 3 cut(s) 410, 1177, 1373
Bst4CI ACNGT 2 cut(s) 706, 1124
Bst6I CTCTTC 3 cut(s) 69, 1023, 1372
BstAFI CTTAAG 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 1460
BstBI TTCGAA 1 cut(s) 318
BstC8I GCNNGC 4 cut(s) 970, 1296, 1392, 1433
BstDEI CTNAG 6 cut(s) 160, 373, 621, 958, 1115, 1448
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 6 cut(s) 372, 998, 1056, 1075, 1143, 1264
BstMAI GTCTC 4 cut(s) 689, 904, 1014, 1291
BstMBI GATC 6 cut(s) 369, 995, 1053, 1072, 1140, 1261
BstMCI CGRYCG 1 cut(s) 998
BstMWI GCNNNNNNNGC 3 cut(s) 868, 1391, 1460
BstNI CCWGG 3 cut(s) 410, 1177, 1373
BstSCI CCNGG 4 cut(s) 408, 535, 1175, 1371
BstUI CGCG 1 cut(s) 342
Bsu15I ATCGAT 1 cut(s) 213
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 8 cut(s) 57, 225, 464, 493, 540, 843, 1175, 1180
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 1120
Cac8I GCNNGC 4 cut(s) 970, 1296, 1392, 1433
CaiI CAGNNNCTG 1 cut(s) 1201
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 758
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 2 cut(s) 702, 818
CspCI CAANNNNNGTGG 2 cut(s) 1109, 1144
CviAII CATG 8 cut(s) 26, 46, 53, 337, 361, 440, 445, 1005
CviQI GTAC 2 cut(s) 702, 818
DdeI CTNAG 6 cut(s) 160, 373, 621, 958, 1115, 1448
DpnI GATC 6 cut(s) 371, 997, 1055, 1074, 1142, 1263
DpnII GATC 6 cut(s) 369, 995, 1053, 1072, 1140, 1261
DrdI GACNNNNNNGTC 1 cut(s) 1006
DseDI GACNNNNNNGTC 1 cut(s) 1006
EaeI YGGCCR 2 cut(s) 55, 462
Eam1104I CTCTTC 3 cut(s) 69, 1023, 1372
EarI CTCTTC 3 cut(s) 69, 1023, 1372
Eco130I CCWWGG 1 cut(s) 1426
Eco147I AGGCCT 1 cut(s) 843
Eco24I GRGCYC 2 cut(s) 887, 934
Eco31I GGTCTC 1 cut(s) 1014
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 758
Eco57I CTGAAG 2 cut(s) 552, 1242
Eco88I CYCGRG 2 cut(s) 231, 1267
EcoO109I RGGNCCY 1 cut(s) 758
EcoRII CCWGG 3 cut(s) 408, 1175, 1371
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 1426
EcoT38I GRGCYC 2 cut(s) 887, 934
ErhI CCWWGG 1 cut(s) 1426
FaeI CATG 8 cut(s) 29, 49, 56, 340, 364, 443, 448, 1008
FalI AAGNNNNNCTT 5 cut(s) 536, 568, 1369, 1401, 1441
FatI CATG 8 cut(s) 25, 45, 52, 336, 360, 439, 444, 1004
FauNDI CATATG 1 cut(s) 467
FbaI TGATCA 1 cut(s) 1053
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 2 cut(s) 887, 934
FspBI CTAG 3 cut(s) 74, 692, 1427
GlaI GCGC 1 cut(s) 341
GsaI CCCAGC 2 cut(s) 664, 1161
HaeIII GGCC 8 cut(s) 57, 225, 464, 493, 540, 843, 1175, 1180
HapII CCGG 2 cut(s) 100, 537
HhaI GCGC 1 cut(s) 342
Hin1II CATG 8 cut(s) 29, 49, 56, 340, 364, 443, 448, 1008
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 1 cut(s) 852
HindII GTYRAC 1 cut(s) 852
HindIII AAGCTT 4 cut(s) 545, 744, 1211, 1433
HinfI GANTC 7 cut(s) 105, 344, 719, 877, 1198, 1227, 1245
HpaI GTTAAC 1 cut(s) 852
HpaII CCGG 2 cut(s) 100, 537
HphI GGTGA 4 cut(s) 161, 611, 649, 1150
Hpy166II GTNNAC 1 cut(s) 852
Hpy188I TCNGA 8 cut(s) 154, 376, 419, 426, 520, 571, 1203, 1232
Hpy188III TCNNGA 3 cut(s) 1057, 1114, 1275
Hpy8I GTNNAC 1 cut(s) 852
HpyAV CCTTC 7 cut(s) 141, 325, 365, 779, 1217, 1301, 1338
HpyCH4III ACNGT 2 cut(s) 706, 1124
HpyCH4V TGCA 4 cut(s) 471, 487, 605, 1352
HpyF10VI GCNNNNNNNGC 3 cut(s) 868, 1391, 1460
HpyF3I CTNAG 6 cut(s) 160, 373, 621, 958, 1115, 1448
Hsp92II CATG 8 cut(s) 29, 49, 56, 340, 364, 443, 448, 1008
HspAI GCGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 1053
KspAI GTTAAC 1 cut(s) 852
Kzo9I GATC 6 cut(s) 369, 995, 1053, 1072, 1140, 1261
LmnI GCTCC 3 cut(s) 688, 737, 1232
LweI GCATC 4 cut(s) 205, 592, 1158, 1463
MaeI CTAG 3 cut(s) 74, 692, 1427
MaeIII GTNAC 2 cut(s) 112, 874
MalI GATC 6 cut(s) 371, 997, 1055, 1074, 1142, 1263
MboI GATC 6 cut(s) 369, 995, 1053, 1072, 1140, 1261
MboII GAAGA 5 cut(s) 56, 373, 1040, 1389, 1449
MhlI GDGCHC 4 cut(s) 483, 887, 934, 1366
MlsI TGGCCA 2 cut(s) 57, 464
MluCI AATT 5 cut(s) 237, 572, 766, 802, 1083
MluNI TGGCCA 2 cut(s) 57, 464
MlyI GAGTC 3 cut(s) 871, 1207, 1221
MmeI TCCRAC 1 cut(s) 1109
Mox20I TGGCCA 2 cut(s) 57, 464
MscI TGGCCA 2 cut(s) 57, 464
MseI TTAA 7 cut(s) 543, 654, 675, 765, 851, 864, 1037
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 2 cut(s) 57, 464
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 2 cut(s) 100, 537
MspR9I CCNGG 4 cut(s) 410, 537, 1177, 1373
Mva1269I GAATGC 1 cut(s) 1210
MvaI CCWGG 3 cut(s) 410, 1177, 1373
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 868, 1391, 1460
NciI CCSGG 1 cut(s) 537
NdeI CATATG 1 cut(s) 467
NdeII GATC 6 cut(s) 369, 995, 1053, 1072, 1140, 1261
NlaIII CATG 8 cut(s) 29, 49, 56, 340, 364, 443, 448, 1008
NlaIV GGNNCC 3 cut(s) 278, 1164, 1411
NmeAIII GCCGAG 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 112, 874
NspV TTCGAA 1 cut(s) 318
PaeR7I CTCGAG 1 cut(s) 231
PasI CCCWGGG 1 cut(s) 1372
PceI AGGCCT 1 cut(s) 843
PctI GAATGC 1 cut(s) 1210
PfeI GAWTC 4 cut(s) 105, 344, 719, 1245
Ple19I CGATCG 1 cut(s) 998
PleI GAGTC 3 cut(s) 871, 1206, 1221
PpsI GAGTC 3 cut(s) 871, 1206, 1221
PpuMI RGGWCCY 1 cut(s) 758
PshBI ATTAAT 1 cut(s) 654
Psp5II RGGWCCY 1 cut(s) 758
Psp6I CCWGG 3 cut(s) 408, 1175, 1371
PspFI CCCAGC 2 cut(s) 660, 1157
PspGI CCWGG 3 cut(s) 408, 1175, 1371
PspN4I GGNNCC 3 cut(s) 278, 1164, 1411
PspPI GGNCC 1 cut(s) 758
PspPPI RGGWCCY 1 cut(s) 758
PspXI VCTCGAGB 1 cut(s) 231
PsrI GAACNNNNNNTAC 2 cut(s) 312, 344
PstNI CAGNNNCTG 1 cut(s) 1201
PvuI CGATCG 1 cut(s) 998
RsaI GTAC 2 cut(s) 703, 819
RsaNI GTAC 2 cut(s) 702, 818
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 7 cut(s) 543, 654, 675, 765, 851, 864, 1037
Sau3AI GATC 6 cut(s) 369, 995, 1053, 1072, 1140, 1261
Sau96I GGNCC 1 cut(s) 758
SchI GAGTC 3 cut(s) 871, 1207, 1221
ScrFI CCNGG 4 cut(s) 410, 537, 1177, 1373
SduI GDGCHC 4 cut(s) 483, 887, 934, 1366
SfaNI GCATC 4 cut(s) 205, 592, 1158, 1463
Sfr274I CTCGAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 318
SinI GGWCC 1 cut(s) 758
SlaI CTCGAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 3 cut(s) 231, 542, 1288
SmoI CTYRAG 3 cut(s) 231, 542, 1288
Sse9I AATT 5 cut(s) 237, 572, 766, 802, 1083
SseBI AGGCCT 1 cut(s) 843
SsiI CCGC 1 cut(s) 1394
SspMI CTAG 3 cut(s) 74, 692, 1427
StuI AGGCCT 1 cut(s) 843
StyD4I CCNGG 4 cut(s) 408, 535, 1175, 1371
StyI CCWWGG 1 cut(s) 1426
TaaI ACNGT 2 cut(s) 706, 1124
TaqI TCGA 6 cut(s) 213, 232, 318, 684, 998, 1143
TasI AATT 5 cut(s) 237, 572, 766, 802, 1083
TfiI GAWTC 4 cut(s) 105, 344, 719, 1245
Tru1I TTAA 7 cut(s) 543, 654, 675, 765, 851, 864, 1037
Tru9I TTAA 7 cut(s) 543, 654, 675, 765, 851, 864, 1037
TscAI CASTG 1 cut(s) 1127
TseFI GTSAC 2 cut(s) 112, 874
Tsp45I GTSAC 2 cut(s) 112, 874
TspDTI ATGAA 5 cut(s) 34, 428, 699, 789, 957
TspGWI ACGGA 2 cut(s) 221, 1035
TspRI CASTG 1 cut(s) 1127
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 758
VspI ATTAAT 1 cut(s) 654
XapI RAATTY 1 cut(s) 1083
XhoI CTCGAG 1 cut(s) 231
XmaJI CCTAGG 1 cut(s) 1426
XspI CTAG 3 cut(s) 74, 692, 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.