Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013676

Physical Location & Seq

Genomic Coordinates Reverse (-)

16208314 .. 16210887

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G201400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGAATTGGAAGATCAACAATTCAAGCATCTATGCAAGTTCTGCAGCAAGAGCTTTCCCTGTGGTAGATCCTTGGGAGGTCACATGAGGTCTCACTTGACCAATAATTCGGCAGAAACAGATGAAAAACTCATAATCGGCAAAGTTAAACTCCCATCAGCCAACAATGTTAATTCTGATTTTGAAACCGGACCTCATCATCAGCCAGGTTATGGCCTCAGAGAGAACCCCAAGAAGACTTGGAGGCTTGCAGATTCAAGTGAGGACACTTCACTTCTCCCTGACAAGTTTTGCAGAGAATGTGGTAAAGGGTTTCAGTCTTGGAAAGCTCTGTTTGGTCATATGAAGTGCCACTCAGAGAAAGAAAGAGTTGTTAATTCCATCAATAGCTTTGATGAGGAAGAAGAAGAAGATTCTTGGACTTGTGCCAACCAGAAGCTAGTCATGGACAGCCAATCTGACAGCGAAACTACCACTCCCAACAGGAGAAGAAGATCGAGAAGAAGAAGAACAAGGTACATGGGCACAACAACCTCCTCTTCCAATTTCTCTATTGCTAATGCTGCCACTTCCTCTGTTTCTGAGATTGAGCAAGAACAAGAAGAGGTTGCTCTGTGTTTGATGATGCTTAAAAGGGATGCGGGTCACTGGGGTGGCTTGAAATTTGTAGCACATGACTCCTCTGATAACAATTCTGTGTTCTCTGAAGCTCCTTCATCAGGTCGAACAAATCGGGTTAATGCTGATATTAAGGGTAAGGTTTCTGTCTGCAGTGGTATTGAGATTTTGAAACTGAAGAAGAAACTTAATAAAAAGACATTGGAGCTTGGAAATTTGGATTCTGATTTTTCAAAACATGGGTCTAGGATGAAAAAAGAACTTCTATCTGCTGTTGGGTTTTCCAAAAATGATAAATTGGACAAGAAAATGGAGTTAGCTCAACCTCAATTGGGTTCAAACAACAAGTGCAATTCAAGCAAGAGAAAATTCCAGGAGAGTTATGATTTTGAGTCAAGGTCAGAGCAATCTCTGAAAACATTGAGCACAACTAGAGGTGATGTTTTAGATTCTGAAGCAGTCTGCAAGAGTTCACAAAAGAGAAGCAAATTTGAGTGCACTACTTGCAACAAGGTTTTTAGGTCATACCAAGCTCTAGGAGGCCATAGAGCAAGTCATAAAAAGATCAAAGGATGCTTCGCCTCAAAAGTTGAAAGCAGTGAAAACACCATTGAAACAGACCTCTCTCCTGAGCCAACATCAGACAGTAAGCTCAGCAAGTCTTGCAACAATGAAAACCCCATTGAGCATGATGTTAAAGCTGAGATTAGTACAGAGAATAAAGGTCATGCTTGTCCAATTTGTCTAAAAGTTTTCCCCTCAGGCCAAGCCTTGGGTGGTCACAAGAGATCCCATTTGATTGGTGGTTCAGCTGAGAATAAAAACAGCCAAACCATTGTAATTCAGAAACCTGCAGCACCTGAAGTCAGGGACTTTCTTGATCTCAATCTCCCTGCTCCTGTTGAAGAAGAGAGCAGTAGCAGCCATGCTGCTGCCTTTAAGCCATGGTGGGTTGGAAGCAGCCATAAGCATGAGGCCCTTGTAGGCCTCATCTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

540

Amino Acids

59.85

Weight (kDa)

8.68

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14270 FvH4_5g14274
malus_domestica	MD06G1199800.v1.1 MD14G1209000.v1.1
prunus_persica	Prupe.5G201400_v2.0.a1
pyrus_communis	pycom06g17660 pycom14g17280
rosa_chinensis	RchiOBHm_Chr7g0182641
rosa_laevigata	RLG00000005112
rosa_multiflora	Rmu_sc0005811.1_g000012 Rmu_sc0027411.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271100
rosa_rugosa	Rorug06G0448700
rosa_samantha	Rh7AG052600 Rh7BG052200 Rh7CG053700 Rh7DG051900
rosa_wichuraiana	Rw7G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1477
AccB7I	CCANNNNNTGG	2 cut(s)	212, 1390
AciI	CCGC	1 cut(s)	641
AclWI	GGATC	2 cut(s)	63, 1401
AcsI	RAATTY	4 cut(s)	662, 832, 986, 1106
AcuI	CTGAAG	4 cut(s)	726, 815, 1092, 1500
AfaI	GTAC	2 cut(s)	518, 1330
AfiI	CCNNNNNNNGG	4 cut(s)	212, 719, 950, 1390
AjnI	CCWGG	2 cut(s)	205, 990
AleI	CACNNNNGTG	1 cut(s)	651
Alw21I	GWGCWC	2 cut(s)	1046, 1118
Alw26I	GTCTC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	1114
AlwI	GGATC	2 cut(s)	63, 1401
AlwNI	CAGNNNCTG	1 cut(s)	1478
AoxI	GGCC	5 cut(s)	214, 1159, 1381, 1593, 1603
ApaLI	GTGCAC	1 cut(s)	1114
ApeKI	GCWGC	7 cut(s)	45, 563, 1472, 1539, 1547, 1550, 1578
ApoI	RAATTY	4 cut(s)	662, 832, 986, 1106
ArsI	GACNNNNNNTTYG	4 cut(s)	91, 123, 845, 877
AspS9I	GGNCC	2 cut(s)	191, 1594
AsuHPI	GGTGA	1 cut(s)	1067
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	1378
BaeGI	GKGCMC	2 cut(s)	527, 1118
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	2 cut(s)	1046, 1118
BbvI	GCAGC	7 cut(s)	57, 550, 1484, 1534, 1537, 1551, 1590
BccI	CCATC	2 cut(s)	163, 389
BciT130I	CCWGG	2 cut(s)	207, 992
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	4 cut(s)	440, 864, 1050, 1154
BfmI	CTRYAG	3 cut(s)	43, 769, 1470
BfuAI	ACCTGC	1 cut(s)	1477
BisI	GCNGC	7 cut(s)	46, 564, 1473, 1540, 1548, 1551, 1579
BlpI	GCTNAGC	1 cut(s)	1271
BlsI	GCNGC	7 cut(s)	47, 565, 1474, 1541, 1549, 1552, 1580
Bme1390I	CCNGG	2 cut(s)	207, 992
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	191, 1594
BmrFI	CCNGG	2 cut(s)	207, 992
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	4 cut(s)	37, 615, 628, 1181
BmuI	ACTGGG	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	1248
Bpu1102I	GCTNAGC	1 cut(s)	1271
BsaBI	GATNNNNATC	1 cut(s)	1503
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	72, 1389, 1562
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 719, 950, 1390
Bse1I	ACTGG	1 cut(s)	653
Bse21I	CCTNAGG	1 cut(s)	1378
Bse8I	GATNNNNATC	1 cut(s)	1503
BseBI	CCWGG	2 cut(s)	207, 992
BseDI	CCNNGG	3 cut(s)	72, 1389, 1562
BseGI	GGATG	3 cut(s)	643, 873, 1196
BseJI	GATNNNNATC	1 cut(s)	1503
BseLI	CCNNNNNNNGG	4 cut(s)	212, 719, 950, 1390
BseMII	CTCAG	8 cut(s)	232, 369, 573, 1239, 1285, 1311, 1392, 1422
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	2 cut(s)	526, 670
BseSI	GKGCMC	2 cut(s)	527, 1118
BseXI	GCAGC	7 cut(s)	57, 550, 1484, 1534, 1537, 1551, 1590
BshFI	GGCC	5 cut(s)	216, 1161, 1383, 1595, 1605
BsiHKAI	GWGCWC	2 cut(s)	1046, 1118
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	1502
BslI	CCNNNNNNNGG	4 cut(s)	212, 719, 950, 1390
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	1502
BsnI	GGCC	5 cut(s)	216, 1161, 1383, 1595, 1605
Bso31I	GGTCTC	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	527, 1046, 1118
Bsp143I	GATC	6 cut(s)	13, 68, 494, 1182, 1406, 1498
Bsp1720I	GCTNAGC	1 cut(s)	1271
Bsp19I	CCATGG	1 cut(s)	1562
BspACI	CCGC	1 cut(s)	641
BspANI	GGCC	5 cut(s)	216, 1161, 1383, 1595, 1605
BspCNI	CTCAG	8 cut(s)	231, 368, 574, 1240, 1284, 1312, 1391, 1423
BspMAI	CTGCAG	3 cut(s)	47, 773, 1474
BspMI	ACCTGC	1 cut(s)	1477
BspPI	GGATC	2 cut(s)	63, 1401
BspTNI	GGTCTC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	653
BssECI	CCNNGG	3 cut(s)	72, 1389, 1562
BssMI	GATC	6 cut(s)	13, 68, 494, 1182, 1406, 1498
BssT1I	CCWWGG	3 cut(s)	72, 1389, 1562
Bst2UI	CCWGG	2 cut(s)	207, 992
Bst4CI	ACNGT	1 cut(s)	1265
Bst6I	CTCTTC	3 cut(s)	544, 597, 1521
BstAPI	GCANNNNNTGC	3 cut(s)	42, 1122, 1281
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	8 cut(s)	218, 355, 582, 1248, 1271, 1320, 1378, 1431
BstDSI	CCRYGG	1 cut(s)	1562
BstENI	CCTNNNNNAGG	1 cut(s)	717
BstF5I	GGATG	3 cut(s)	643, 873, 1196
BstKTI	GATC	6 cut(s)	16, 71, 497, 1185, 1409, 1501
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	6 cut(s)	13, 68, 494, 1182, 1406, 1498
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 51, 563, 975, 1122, 1281, 1539
BstNI	CCWGG	2 cut(s)	207, 992
BstSCI	CCNGG	2 cut(s)	205, 990
BstSFI	CTRYAG	3 cut(s)	43, 769, 1470
BstSLI	GKGCMC	2 cut(s)	527, 1118
BstV1I	GCAGC	7 cut(s)	57, 550, 1484, 1534, 1537, 1551, 1590
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	68, 1406
BstXI	CCANNNNNNTGG	1 cut(s)	1418
BstYI	RGATCY	2 cut(s)	68, 1406
Bsu36I	CCTNAGG	1 cut(s)	1378
BsuRI	GGCC	5 cut(s)	216, 1161, 1383, 1595, 1605
BtgI	CCRYGG	1 cut(s)	1562
BtsCI	GGATG	3 cut(s)	643, 873, 1196
BtsI	GCAGTG	2 cut(s)	778, 1222
BtsIMutI	CAGTG	3 cut(s)	646, 778, 1222
BveI	ACCTGC	1 cut(s)	1477
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	1478
Cfr13I	GGNCC	2 cut(s)	191, 1594
Csp6I	GTAC	2 cut(s)	517, 1329
CviQI	GTAC	2 cut(s)	517, 1329
DdeI	CTNAG	8 cut(s)	218, 355, 582, 1248, 1271, 1320, 1378, 1431
DpnI	GATC	6 cut(s)	15, 70, 496, 1184, 1408, 1500
DpnII	GATC	6 cut(s)	13, 68, 494, 1182, 1406, 1498
Eam1104I	CTCTTC	3 cut(s)	544, 597, 1521
EarI	CTCTTC	3 cut(s)	544, 597, 1521
Eco130I	CCWWGG	3 cut(s)	72, 1389, 1562
Eco147I	AGGCCT	1 cut(s)	1605
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	4 cut(s)	726, 815, 1092, 1500
Eco81I	CCTNAGG	1 cut(s)	1378
EcoNI	CCTNNNNNAGG	1 cut(s)	717
EcoO109I	RGGNCCY	1 cut(s)	1594
EcoRII	CCWGG	2 cut(s)	205, 990
EcoT14I	CCWWGG	3 cut(s)	72, 1389, 1562
ErhI	CCWWGG	3 cut(s)	72, 1389, 1562
FaqI	GGGAC	1 cut(s)	1502
FauI	CCCGC	1 cut(s)	634
FauNDI	CATATG	1 cut(s)	342
Fnu4HI	GCNGC	7 cut(s)	46, 564, 1473, 1540, 1548, 1551, 1579
FokI	GGATG	3 cut(s)	650, 880, 1203
Fsp4HI	GCNGC	7 cut(s)	46, 564, 1473, 1540, 1548, 1551, 1579
FspBI	CTAG	4 cut(s)	440, 864, 1050, 1154
GluI	GCNGC	7 cut(s)	46, 564, 1473, 1540, 1548, 1551, 1579
HaeIII	GGCC	5 cut(s)	216, 1161, 1383, 1595, 1605
HapII	CCGG	1 cut(s)	189
HinfI	GANTC	6 cut(s)	254, 413, 677, 839, 1010, 1067
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	1067
Hpy166II	GTNNAC	2 cut(s)	1091, 1116
Hpy188III	TCNNGA	3 cut(s)	498, 1247, 1496
Hpy8I	GTNNAC	2 cut(s)	1091, 1116
HpyAV	CCTTC	1 cut(s)	723
HpyCH4III	ACNGT	1 cut(s)	1265
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 51, 563, 975, 1122, 1281, 1539
HpyF3I	CTNAG	8 cut(s)	218, 355, 582, 1248, 1271, 1320, 1378, 1431
Kzo9I	GATC	6 cut(s)	13, 68, 494, 1182, 1406, 1498
LmnI	GCTCC	3 cut(s)	715, 823, 1519
Lsp1109I	GCAGC	7 cut(s)	57, 550, 1484, 1534, 1537, 1551, 1590
LweI	GCATC	4 cut(s)	37, 615, 628, 1181
MaeI	CTAG	4 cut(s)	440, 864, 1050, 1154
MaeIII	GTNAC	3 cut(s)	80, 644, 1397
MalI	GATC	6 cut(s)	15, 70, 496, 1184, 1408, 1500
MboI	GATC	6 cut(s)	13, 68, 494, 1182, 1406, 1498
MfeI	CAATTG	1 cut(s)	947
MflI	RGATCY	2 cut(s)	68, 1406
MhlI	GDGCHC	3 cut(s)	527, 1046, 1118
MlyI	GAGTC	2 cut(s)	671, 1019
MmeI	TCCRAC	1 cut(s)	1552
MseI	TTAA	9 cut(s)	147, 171, 375, 630, 738, 750, 807, 1314, 1557
MslI	CAYNNNNRTG	2 cut(s)	651, 1587
MspA1I	CMGCKG	1 cut(s)	1430
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	207, 992
MunI	CAATTG	1 cut(s)	947
MvaI	CCWGG	2 cut(s)	207, 992
MwoI	GCNNNNNNNGC	7 cut(s)	42, 51, 563, 975, 1122, 1281, 1539
NcoI	CCATGG	1 cut(s)	1562
NdeI	CATATG	1 cut(s)	342
NdeII	GATC	6 cut(s)	13, 68, 494, 1182, 1406, 1498
NmuCI	GTSAC	3 cut(s)	80, 644, 1397
OliI	CACNNNNGTG	1 cut(s)	651
PceI	AGGCCT	1 cut(s)	1605
PfeI	GAWTC	4 cut(s)	254, 413, 839, 1067
PflMI	CCANNNNNTGG	2 cut(s)	212, 1390
PfoI	TCCNGGA	1 cut(s)	990
PkrI	GCNGC	7 cut(s)	47, 565, 1474, 1541, 1549, 1552, 1580
PleI	GAGTC	2 cut(s)	671, 1018
PpsI	GAGTC	2 cut(s)	671, 1018
Psp6I	CCWGG	2 cut(s)	205, 990
PspGI	CCWGG	2 cut(s)	205, 990
PspPI	GGNCC	2 cut(s)	191, 1594
PstI	CTGCAG	3 cut(s)	47, 773, 1474
PstNI	CAGNNNCTG	1 cut(s)	1478
PsuI	RGATCY	2 cut(s)	68, 1406
PvuII	CAGCTG	1 cut(s)	1430
RsaI	GTAC	2 cut(s)	518, 1330
RsaNI	GTAC	2 cut(s)	517, 1329
RseI	CAYNNNNRTG	2 cut(s)	651, 1587
SaqAI	TTAA	9 cut(s)	147, 171, 375, 630, 738, 750, 807, 1314, 1557
SatI	GCNGC	7 cut(s)	46, 564, 1473, 1540, 1548, 1551, 1579
Sau3AI	GATC	6 cut(s)	13, 68, 494, 1182, 1406, 1498
Sau96I	GGNCC	2 cut(s)	191, 1594
SchI	GAGTC	2 cut(s)	671, 1019
ScrFI	CCNGG	2 cut(s)	207, 992
SduI	GDGCHC	3 cut(s)	527, 1046, 1118
SfaNI	GCATC	4 cut(s)	37, 615, 628, 1181
SfcI	CTRYAG	3 cut(s)	43, 769, 1470
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	651, 1587
SseBI	AGGCCT	1 cut(s)	1605
SsiI	CCGC	1 cut(s)	641
SspMI	CTAG	4 cut(s)	440, 864, 1050, 1154
StuI	AGGCCT	1 cut(s)	1605
StyD4I	CCNGG	2 cut(s)	205, 990
StyI	CCWWGG	3 cut(s)	72, 1389, 1562
TaaI	ACNGT	1 cut(s)	1265
TaqI	TCGA	2 cut(s)	497, 724
TatI	WGTACW	1 cut(s)	1328
TfiI	GAWTC	4 cut(s)	254, 413, 839, 1067
Tru1I	TTAA	9 cut(s)	147, 171, 375, 630, 738, 750, 807, 1314, 1557
Tru9I	TTAA	9 cut(s)	147, 171, 375, 630, 738, 750, 807, 1314, 1557
TscAI	CASTG	3 cut(s)	653, 778, 1222
TseFI	GTSAC	3 cut(s)	80, 644, 1397
TseI	GCWGC	7 cut(s)	45, 563, 1472, 1539, 1547, 1550, 1578
Tsp45I	GTSAC	3 cut(s)	80, 644, 1397
TspDTI	ATGAA	5 cut(s)	138, 359, 705, 884, 1305
TspRI	CASTG	3 cut(s)	653, 778, 1222
Van91I	CCANNNNNTGG	2 cut(s)	212, 1390
VneI	GTGCAC	1 cut(s)	1114
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	717
XapI	RAATTY	4 cut(s)	662, 832, 986, 1106
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1391, 1418
XspI	CTAG	4 cut(s)	440, 864, 1050, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.