Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013676

Physical Location & Seq

Genomic Coordinates Reverse (-)

21568982 .. 21570503

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGAAGAAGATCAAGAGTTGAAGTATGTATGCAAGTTTTGCAGCAAGAGCTTCCCCTGTGGCAGATCATTGGGAGGTCACATGAGGTGTCACTTAATCAACAATTCGCTGGAAACAGAGGAAAAGCTCAATACCGGCGGAGTTAAGCTCTCGTCCTCCAACAATGGCGGTTCTGATTTCGAAGGTGGAACTCATCAGCAACCCGGTTATGGTCTGAGGGAGAATCCCAAGAAAACATGGAGGCTCACGGACTCGAGTGAGGACACTTCGCTTCATCCGGACAAGTTTTGTAGAGAATGTGGCAAGGGGTTTCAGTCTTGGAAATCTCTTTTCGGTCACATGAAGTTCCACTCGGAAAAAGAAAGAGTTTCGATTGAGAGCCTCGAGGAAGAACACGAAGATTCTTGGACTAGCCAATCGGAGAACAAAACTACTGCTGCTCCTCCCAATCGGGGAAGAAGATCGGGAAGAAAAACAAGGTACATGGGAGCAACAACTTCATCTTCTAACTTTTCAATTGTTGCTGCTGCTGCTGCTACTTCCTCTGTTTCCGAGATTGAGCAAGAACAAGAAGAGGTTGCTATGTGTTTGATGATGCTTTCGAGGGATTCGGGTCACTGGGGCGGCTTAAAATTAGTAGCTCGTGACTCTTTCGATGGAAATTCAGGGTTCTCGGATCCTCCATCATCAGTTGGAACAACTCGGGTTGCGGATATTAAGAGTAAGATTGCTACAACTTTGAAACTGAAGAACAAACTCAATAAAAAGGTGTTGGAGCCTCGACACTTCGAGTCCCTAGCAGTACTTGAAGGTAGAAAATCCAAGTTTTGTTCTTCTGCTGGCGGGTTTTCGAATAATGATAAATTGGGTTCCAACAAGTACAATTCAAGCAAGAGGAAGATCAAAGAGACTTGTGATTTTGAACTGAGGTCAGATCAGTCCCCAAAAAATTTGAGTACTAGTAGAGCTGATATTTTGGATTCTGAAGTAGTAGTTTGCAAGAGTTCACAAAAGAGAAGCAAATTCGAATGTACTACTTGCAACAAGGTTTTTCGATCGTACCAAGGTGCTTCGCTTCGAACGATCGAAAGCGGTGAAAACACCATGGAAACTGACATCTCCCCCGGGTCTTGCTGCAACAATGACAACCCCATTGAGCAAGAAATAGCAGAGAGCGGTGCAAAAAGTACTAAAGGGCATTCCTGTCCAATTTGCTACAGAGTTTTCTCCTCAGGGCAAGCATTGGGAGGGCACAAAAGATCTCAATTGATTGGTGAGGCTAAAATTACCAGCCAAACCCTAGTGATTCAGAAGCCTGCAGCTCCTGAAGTGAGAAACTTTCTTGATCTCAATCTTCCTGCTCCTGTGGAGGAAGAAAGCAGTAGCAACCATGATGCAGCCGCAGTAGCATTCAAGCCATGGTGGGTCGGGAGCAGCAGCCATAAGCATGAGGCTGCCCTTGTAGGGCTCATCTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

494

Amino Acids

54.07

Weight (kDa)

8.37

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14270 FvH4_5g14274
malus_domestica	MD06G1199800.v1.1 MD14G1209000.v1.1
prunus_persica	Prupe.5G201400_v2.0.a1
pyrus_communis	pycom06g17660 pycom14g17280
rosa_chinensis	RchiOBHm_Chr7g0182641
rosa_laevigata	RLG00000005112
rosa_multiflora	Rmu_sc0005811.1_g000012 Rmu_sc0027411.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271100
rosa_rugosa	Rorug06G0448700
rosa_samantha	Rh7AG052600 Rh7BG052200 Rh7CG053700 Rh7DG051900
rosa_wichuraiana	Rw7G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	1176
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	8 cut(s)	138, 168, 624, 710, 843, 1092, 1176, 1401
AclWI	GGATC	2 cut(s)	671, 684
AcsI	RAATTY	3 cut(s)	661, 949, 1022
AcuI	CTGAAG	3 cut(s)	767, 1005, 1347
AfaI	GTAC	7 cut(s)	482, 804, 881, 958, 1033, 1061, 1189
AfiI	CCNNNNNNNGG	3 cut(s)	209, 452, 1464
AgsI	TTSAA	7 cut(s)	22, 516, 742, 809, 888, 923, 1414
AhlI	ACTAGT	1 cut(s)	959
AluBI	AGCT	6 cut(s)	51, 127, 148, 641, 968, 1322
AluI	AGCT	6 cut(s)	51, 127, 148, 641, 968, 1322
Alw26I	GTCTC	1 cut(s)	902
AlwI	GGATC	2 cut(s)	671, 684
AlwNI	CAGNNNCTG	1 cut(s)	1325
Ama87I	CYCGRG	4 cut(s)	253, 383, 702, 1124
Aor13HI	TCCGGA	1 cut(s)	277
ApoI	RAATTY	3 cut(s)	661, 949, 1022
AsuC2I	CCSGG	3 cut(s)	204, 1125, 1126
AsuHPI	GGTGA	2 cut(s)	1106, 1286
AsuII	TTCGAA	4 cut(s)	180, 851, 1026, 1078
AvaI	CYCGRG	4 cut(s)	253, 383, 702, 1124
AxyI	CCTNAGG	1 cut(s)	1231
BaeGI	GKGCMC	1 cut(s)	1254
BamHI	GGATCC	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	1470
BauI	CACGAG	1 cut(s)	642
BccI	CCATC	2 cut(s)	650, 691
BcnI	CCSGG	3 cut(s)	204, 1125, 1126
BcoDI	GTCTC	1 cut(s)	902
BcuI	ACTAGT	1 cut(s)	959
BfaI	CTAG	4 cut(s)	411, 797, 960, 1301
BfmI	CTRYAG	2 cut(s)	1216, 1317
BglII	AGATCT	1 cut(s)	1259
BmcAI	AGTACT	3 cut(s)	804, 958, 1189
Bme1390I	CCNGG	3 cut(s)	204, 1125, 1126
BmeT110I	CYCGRG	4 cut(s)	253, 383, 702, 1124
BmiI	GGNNCC	3 cut(s)	678, 777, 871
BmrFI	CCNGG	3 cut(s)	204, 1125, 1126
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	2 cut(s)	585, 1384
BmuI	ACTGGG	1 cut(s)	628
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
Bpu14I	TTCGAA	4 cut(s)	180, 851, 1026, 1078
BpuMI	CCSGG	3 cut(s)	204, 1125, 1126
BsaBI	GATNNNNATC	1 cut(s)	1350
BsaJI	CCNNGG	5 cut(s)	1063, 1104, 1123, 1124, 1418
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 452, 1464
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	623
Bse21I	CCTNAGG	1 cut(s)	1231
Bse8I	GATNNNNATC	1 cut(s)	1350
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	5 cut(s)	1063, 1104, 1123, 1124, 1418
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	1350
BseLI	CCNNNNNNNGG	3 cut(s)	209, 452, 1464
BseMII	CTCAG	3 cut(s)	206, 917, 1245
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	2 cut(s)	432, 1219
BseSI	GKGCMC	1 cut(s)	1254
Bsh1285I	CGRYCG	2 cut(s)	1058, 1086
BsiEI	CGRYCG	2 cut(s)	1058, 1086
BsiHKCI	CYCGRG	4 cut(s)	253, 383, 702, 1124
BsiSI	CCGG	4 cut(s)	135, 204, 278, 1125
BslFI	GGGAC	2 cut(s)	778, 925
BslI	CCNNNNNNNGG	3 cut(s)	209, 452, 1464
BsmAI	GTCTC	1 cut(s)	902
BsmFI	GGGAC	2 cut(s)	778, 925
BsmI	GAATGC	2 cut(s)	1198, 1409
BsoBI	CYCGRG	4 cut(s)	253, 383, 702, 1124
Bsp119I	TTCGAA	4 cut(s)	180, 851, 1026, 1078
Bsp1286I	GDGCHC	2 cut(s)	1254, 1470
Bsp13I	TCCGGA	1 cut(s)	277
Bsp19I	CCATGG	2 cut(s)	1104, 1418
BspACI	CCGC	8 cut(s)	138, 168, 624, 710, 843, 1092, 1176, 1401
BspCNI	CTCAG	3 cut(s)	207, 918, 1244
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	678, 777, 871
BspMAI	CTGCAG	1 cut(s)	1321
BspPI	GGATC	2 cut(s)	671, 684
BspT104I	TTCGAA	4 cut(s)	180, 851, 1026, 1078
BsrBI	CCGCTC	1 cut(s)	1176
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	623
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	5 cut(s)	1063, 1104, 1123, 1124, 1418
BssSI	CACGAG	1 cut(s)	642
BssT1I	CCWWGG	3 cut(s)	1063, 1104, 1418
Bst2BI	CACGAG	1 cut(s)	642
Bst6I	CTCTTC	1 cut(s)	567
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstBI	TTCGAA	4 cut(s)	180, 851, 1026, 1078
BstC8I	GCNNGC	3 cut(s)	841, 1239, 1317
BstDEI	CTNAG	3 cut(s)	215, 926, 1231
BstDSI	CCRYGG	2 cut(s)	1104, 1418
BstF5I	GGATG	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	902
BstMCI	CGRYCG	2 cut(s)	1058, 1086
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 48, 530, 533, 1406
BstSCI	CCNGG	3 cut(s)	202, 1123, 1124
BstSFI	CTRYAG	2 cut(s)	1216, 1317
BstSLI	GKGCMC	1 cut(s)	1254
BstX2I	RGATCY	2 cut(s)	676, 1259
BstYI	RGATCY	2 cut(s)	676, 1259
Bsu36I	CCTNAGG	1 cut(s)	1231
BtgI	CCRYGG	2 cut(s)	1104, 1418
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	616
Cac8I	GCNNGC	3 cut(s)	841, 1239, 1317
CaiI	CAGNNNCTG	1 cut(s)	1325
Cfr10I	RCCGGY	1 cut(s)	134
Cfr9I	CCCGGG	1 cut(s)	1124
Csp6I	GTAC	7 cut(s)	481, 803, 880, 957, 1032, 1060, 1188
CviAII	CATG	8 cut(s)	82, 237, 340, 484, 1105, 1391, 1419, 1448
CviQI	GTAC	7 cut(s)	481, 803, 880, 957, 1032, 1060, 1188
DdeI	CTNAG	3 cut(s)	215, 926, 1231
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	153
Eco130I	CCWWGG	3 cut(s)	1063, 1104, 1418
Eco24I	GRGCYC	1 cut(s)	1470
Eco57I	CTGAAG	3 cut(s)	767, 1005, 1347
Eco81I	CCTNAGG	1 cut(s)	1231
Eco88I	CYCGRG	4 cut(s)	253, 383, 702, 1124
EcoT14I	CCWWGG	3 cut(s)	1063, 1104, 1418
EcoT38I	GRGCYC	1 cut(s)	1470
ErhI	CCWWGG	3 cut(s)	1063, 1104, 1418
FaeI	CATG	8 cut(s)	85, 240, 343, 487, 1108, 1394, 1422, 1451
FaqI	GGGAC	2 cut(s)	778, 925
FatI	CATG	8 cut(s)	81, 236, 339, 483, 1104, 1390, 1418, 1447
FauI	CCCGC	1 cut(s)	836
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	1470
FspBI	CTAG	4 cut(s)	411, 797, 960, 1301
HapII	CCGG	4 cut(s)	135, 204, 278, 1125
Hin1II	CATG	8 cut(s)	85, 240, 343, 487, 1108, 1394, 1422, 1451
HinfI	GANTC	8 cut(s)	223, 251, 401, 608, 647, 791, 980, 1306
HpaII	CCGG	4 cut(s)	135, 204, 278, 1125
HphI	GGTGA	2 cut(s)	1106, 1286
Hpy166II	GTNNAC	1 cut(s)	1007
Hpy188I	TCNGA	9 cut(s)	175, 216, 355, 421, 553, 676, 934, 985, 1311
Hpy188III	TCNNGA	7 cut(s)	14, 278, 465, 644, 1325, 1343, 1429
Hpy8I	GTNNAC	1 cut(s)	1007
HpyAV	CCTTC	2 cut(s)	176, 803
HpyCH4V	TGCA	8 cut(s)	33, 42, 999, 1041, 1137, 1181, 1319, 1397
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 48, 530, 533, 1406
HpyF3I	CTNAG	3 cut(s)	215, 926, 1231
Hsp92II	CATG	8 cut(s)	85, 240, 343, 487, 1108, 1394, 1422, 1451
Kpn2I	TCCGGA	1 cut(s)	277
LmnI	GCTCC	6 cut(s)	445, 488, 775, 1327, 1366, 1431
LweI	GCATC	2 cut(s)	585, 1384
MaeI	CTAG	4 cut(s)	411, 797, 960, 1301
MaeIII	GTNAC	5 cut(s)	77, 89, 335, 614, 644
MbiI	CCGCTC	1 cut(s)	1176
MfeI	CAATTG	2 cut(s)	516, 1265
MflI	RGATCY	2 cut(s)	676, 1259
MhlI	GDGCHC	2 cut(s)	1254, 1470
MlyI	GAGTC	3 cut(s)	245, 641, 800
MmeI	TCCRAC	4 cut(s)	183, 673, 753, 897
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	4 cut(s)	95, 144, 629, 717
MslI	CAYNNNNRTG	1 cut(s)	1446
MspI	CCGG	4 cut(s)	135, 204, 278, 1125
MspR9I	CCNGG	3 cut(s)	204, 1125, 1126
MunI	CAATTG	2 cut(s)	516, 1265
Mva1269I	GAATGC	2 cut(s)	1198, 1409
MwoI	GCNNNNNNNGC	5 cut(s)	39, 48, 530, 533, 1406
NciI	CCSGG	3 cut(s)	204, 1125, 1126
NcoI	CCATGG	2 cut(s)	1104, 1418
NlaIII	CATG	8 cut(s)	85, 240, 343, 487, 1108, 1394, 1422, 1451
NlaIV	GGNNCC	3 cut(s)	678, 777, 871
NmuCI	GTSAC	5 cut(s)	77, 89, 335, 614, 644
NspV	TTCGAA	4 cut(s)	180, 851, 1026, 1078
PaeR7I	CTCGAG	2 cut(s)	253, 383
PcsI	WCGNNNNNNNCGW	1 cut(s)	1079
PctI	GAATGC	2 cut(s)	1198, 1409
PfeI	GAWTC	5 cut(s)	223, 401, 608, 980, 1306
Ple19I	CGATCG	2 cut(s)	1058, 1086
PleI	GAGTC	3 cut(s)	245, 641, 799
PpsI	GAGTC	3 cut(s)	245, 641, 799
PspN4I	GGNNCC	3 cut(s)	678, 777, 871
PspXI	VCTCGAGB	2 cut(s)	253, 383
PstI	CTGCAG	1 cut(s)	1321
PstNI	CAGNNNCTG	1 cut(s)	1325
PsuI	RGATCY	2 cut(s)	676, 1259
PvuI	CGATCG	2 cut(s)	1058, 1086
RsaI	GTAC	7 cut(s)	482, 804, 881, 958, 1033, 1061, 1189
RsaNI	GTAC	7 cut(s)	481, 803, 880, 957, 1032, 1060, 1188
RseI	CAYNNNNRTG	1 cut(s)	1446
SaqAI	TTAA	4 cut(s)	95, 144, 629, 717
ScaI	AGTACT	3 cut(s)	804, 958, 1189
SchI	GAGTC	3 cut(s)	245, 641, 800
ScrFI	CCNGG	3 cut(s)	204, 1125, 1126
SduI	GDGCHC	2 cut(s)	1254, 1470
SfaNI	GCATC	2 cut(s)	585, 1384
SfcI	CTRYAG	2 cut(s)	1216, 1317
Sfr274I	CTCGAG	2 cut(s)	253, 383
SfuI	TTCGAA	4 cut(s)	180, 851, 1026, 1078
SlaI	CTCGAG	2 cut(s)	253, 383
SmaI	CCCGGG	1 cut(s)	1126
SmiMI	CAYNNNNRTG	1 cut(s)	1446
SmlI	CTYRAG	2 cut(s)	253, 383
SmoI	CTYRAG	2 cut(s)	253, 383
SpeI	ACTAGT	1 cut(s)	959
SsiI	CCGC	8 cut(s)	138, 168, 624, 710, 843, 1092, 1176, 1401
SspMI	CTAG	4 cut(s)	411, 797, 960, 1301
StyD4I	CCNGG	3 cut(s)	202, 1123, 1124
StyI	CCWWGG	3 cut(s)	1063, 1104, 1418
TaqII	GACCGA	1 cut(s)	323
TatI	WGTACW	5 cut(s)	802, 879, 956, 1031, 1187
TauI	GCSGC	2 cut(s)	627, 1403
TfiI	GAWTC	5 cut(s)	223, 401, 608, 980, 1306
Tru1I	TTAA	4 cut(s)	95, 144, 629, 717
Tru9I	TTAA	4 cut(s)	95, 144, 629, 717
TscAI	CASTG	1 cut(s)	623
TseFI	GTSAC	5 cut(s)	77, 89, 335, 614, 644
Tsp45I	GTSAC	5 cut(s)	77, 89, 335, 614, 644
TspDTI	ATGAA	3 cut(s)	263, 356, 489
TspGWI	ACGGA	1 cut(s)	263
TspMI	CCCGGG	1 cut(s)	1124
TspRI	CASTG	1 cut(s)	623
XapI	RAATTY	3 cut(s)	661, 949, 1022
XhoI	CTCGAG	2 cut(s)	253, 383
XmaI	CCCGGG	1 cut(s)	1124
XspI	CTAG	4 cut(s)	411, 797, 960, 1301
ZrmI	AGTACT	3 cut(s)	804, 958, 1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.